BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0247.1
(323 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07080 putative gag-protease polyprotein 73 2e-13
At4g04560 putative transposon protein 63 2e-10
At3g61330 copia-type polyprotein 58 8e-09
At3g60170 putative protein 58 8e-09
At3g59720 copia-type reverse transcriptase-like protein 58 8e-09
At1g58140 hypothetical protein 58 8e-09
At1g48710 hypothetical protein 58 8e-09
At4g04420 putative transposon protein 57 1e-08
At2g05930 copia-like retroelement pol polyprotein 54 9e-08
At2g15650 putative retroelement pol polyprotein 53 3e-07
At1g32590 hypothetical protein, 5' partial 52 4e-07
At3g20990 unknown protein 48 8e-06
At3g45520 copia-like polyprotein 42 5e-04
At3g31380 hypothetical protein 40 0.001
At1g36110 hypothetical protein 37 0.014
At3g21010 unknown protein 36 0.025
At3g55300 putative protein 36 0.032
At4g10460 putative retrotransposon 34 0.094
At1g59265 polyprotein, putative 32 0.61
At1g58889 polyprotein, putative 32 0.61
>At2g07080 putative gag-protease polyprotein
Length = 627
Score = 73.2 bits (178), Expect = 2e-13
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 9/160 (5%)
Query: 59 LWDIVVYGYTRLV-------DEDGVKIPREKMN--GDQKKKYKDHHRARTILLNAISYEE 109
L D YGY ++ EDG KI + K N ++K + K + RA + N + +E
Sbjct: 15 LLDTKRYGYWKVCMTQIIRGQEDGFKITKPKANWTAEEKLQSKFNARAMKAIFNGVDEDE 74
Query: 110 YEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESIEAMFSRF*ML 169
++ I +SAK +D+L+ +HEG K T+ + ++ KMEPDE I S+ L
Sbjct: 75 FKLIQGCKSAKQAWDTLQKSHEGTSSVKRTRLDHIATQFEYLKMEPDEKIVKFSSKISAL 134
Query: 170 IAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKN 209
V+ K Y KK++R LP K+ ++++ N
Sbjct: 135 ANEAEVMGKTYKDQKLVKKLLRCLPPKFAAHKAVMRVAGN 174
>At4g04560 putative transposon protein
Length = 590
Score = 62.8 bits (151), Expect = 2e-10
Identities = 45/182 (24%), Positives = 81/182 (43%), Gaps = 4/182 (2%)
Query: 32 KPPVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGY----TRLVDEDGVKIPREKMNGDQ 87
KP D E + Y K I+ D D W V G+ T+ D V R + D+
Sbjct: 344 KPLKLDAEHYGYWKVLIKRSIQSIDMDAWFAVEDGWMPPTTKDAKRDIVSKSRTEWIADE 403
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKK 147
K + +A +++ ++ ++ ++ SAK +++ L+++ E K T+ L +
Sbjct: 404 KTAANHNSQALSVIFGSLLRNKFTQVQGCLSAKEVWEILQVSFECTNNVKRTRLDMLASE 463
Query: 148 YGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLS 207
+ ME +ES++ + + VL K Y KK +RSLP+K+ A+ +S
Sbjct: 464 FENLTMEAEESVDDFNGKLSSITQEAVVLGKTYKDKKMVKKFLRSLPDKFQSHKSAIDVS 523
Query: 208 KN 209
N
Sbjct: 524 LN 525
Score = 33.5 bits (75), Expect = 0.16
Identities = 41/188 (21%), Positives = 81/188 (42%), Gaps = 26/188 (13%)
Query: 34 PVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKD 93
P+F+ E + + + +++ F LW+IV DE K P E + + + K
Sbjct: 8 PIFNKENYGFWRIKMKTIFQT--KKLWEIV--------DEGVPKPPAEGDHSPEAVQQKT 57
Query: 94 HHRARTIL-LNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFK 152
A ++ L A+ +I + SIF + + AL +Y K
Sbjct: 58 RCEAASLKDLTAL------QILQTAVSDSIFPRIAPA---------SSALGKPWEYENLK 102
Query: 153 MEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKS 212
M+ ++I ++ + +RV + + +KI+ SLP+++ +V +K +K+L S
Sbjct: 103 MKESDNINTFMTKLIEMGNQLRVHGEEKSDYQIVQKILISLPKRFDIIVAMMKQTKDLTS 162
Query: 213 GGTGKYLE 220
GK+ +
Sbjct: 163 LSAGKWCD 170
>At3g61330 copia-type polyprotein
Length = 1352
Score = 57.8 bits (138), Expect = 8e-09
Identities = 39/173 (22%), Positives = 87/173 (49%), Gaps = 8/173 (4%)
Query: 45 KDRIENFFLRFDT-----DLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKDHHRART 99
K +N+ LR D+W+IV G+ +E + ++ D +K+ K +A
Sbjct: 15 KSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK---KALC 71
Query: 100 ILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESI 159
++ + + +EK+ + SAK ++ LR +++G ++ K+ + L ++ A +M+ E +
Sbjct: 72 LIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELV 131
Query: 160 EAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKS 212
FSR + ++ + V +K++RSL K+ +V ++ +K+L++
Sbjct: 132 SDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEA 184
>At3g60170 putative protein
Length = 1339
Score = 57.8 bits (138), Expect = 8e-09
Identities = 44/179 (24%), Positives = 87/179 (48%), Gaps = 5/179 (2%)
Query: 34 PVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKD 93
P FDG +D+ +ENF +LW +V G +V + + + ++ K KD
Sbjct: 13 PRFDGY-YDFWSMTMENFLR--SRELWRLVEEGIPAIV-VGTTPVSEAQRSAVEEAKLKD 68
Query: 94 HHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKM 153
+ + L AI E E I D+ ++K+I++S++ ++G+ + K + AL K++ M
Sbjct: 69 L-KVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAM 127
Query: 154 EPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKS 212
+ E I+ R ++ ++ + KI+RSL K+ +V +++ S +L +
Sbjct: 128 KEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLST 186
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 57.8 bits (138), Expect = 8e-09
Identities = 39/173 (22%), Positives = 87/173 (49%), Gaps = 8/173 (4%)
Query: 45 KDRIENFFLRFDT-----DLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKDHHRART 99
K +N+ LR D+W+IV G+ +E + ++ D +K+ K +A
Sbjct: 15 KSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK---KALC 71
Query: 100 ILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESI 159
++ + + +EK+ + SAK ++ LR +++G ++ K+ + L ++ A +M+ E +
Sbjct: 72 LIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELV 131
Query: 160 EAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKS 212
FSR + ++ + V +K++RSL K+ +V ++ +K+L++
Sbjct: 132 SDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEA 184
>At1g58140 hypothetical protein
Length = 1320
Score = 57.8 bits (138), Expect = 8e-09
Identities = 39/173 (22%), Positives = 87/173 (49%), Gaps = 8/173 (4%)
Query: 45 KDRIENFFLRFDT-----DLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKDHHRART 99
K +N+ LR D+W+IV G+ +E + ++ D +K+ K +A
Sbjct: 15 KSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK---KALC 71
Query: 100 ILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESI 159
++ + + +EK+ + SAK ++ LR +++G ++ K+ + L ++ A +M+ E +
Sbjct: 72 LIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELV 131
Query: 160 EAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKS 212
FSR + ++ + V +K++RSL K+ +V ++ +K+L++
Sbjct: 132 SDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEA 184
>At1g48710 hypothetical protein
Length = 1352
Score = 57.8 bits (138), Expect = 8e-09
Identities = 39/173 (22%), Positives = 87/173 (49%), Gaps = 8/173 (4%)
Query: 45 KDRIENFFLRFDT-----DLWDIVVYGYTRLVDEDGVKIPREKMNGDQKKKYKDHHRART 99
K +N+ LR D+W+IV G+ +E + ++ D +K+ K +A
Sbjct: 15 KSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDSRKRDK---KALC 71
Query: 100 ILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESI 159
++ + + +EK+ + SAK ++ LR +++G ++ K+ + L ++ A +M+ E +
Sbjct: 72 LIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELV 131
Query: 160 EAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKS 212
FSR + ++ + V +K++RSL K+ +V ++ +K+L++
Sbjct: 132 SDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEA 184
>At4g04420 putative transposon protein
Length = 1008
Score = 57.0 bits (136), Expect = 1e-08
Identities = 33/127 (25%), Positives = 64/127 (49%), Gaps = 2/127 (1%)
Query: 73 EDGVKI--PREKMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTH 130
EDG + +++ N ++ K K + RA +++ N ++ ++++I + ESAK +D L +
Sbjct: 55 EDGEDVLKTKDQWNDAEEAKAKANSRALSLIFNFVNQNQFKRIQNCESAKEAWDKLAKAY 114
Query: 131 EGNEEDKETKALALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKII 190
EG K ++ L ++ ME E+IE + + + L K Y KK++
Sbjct: 115 EGTSSVKRSRIDMLASQFENLSMEETENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLL 174
Query: 191 RSLPEKW 197
R LP ++
Sbjct: 175 RCLPSRF 181
>At2g05930 copia-like retroelement pol polyprotein
Length = 916
Score = 54.3 bits (129), Expect = 9e-08
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 73 EDGVKIPR--EKMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTH 130
EDG + + ++ N ++ K + RA +++ N+++ ++++I + ESAK +D L +
Sbjct: 67 EDGEDVLKTEDQWNDAEEAKATANSRALSLIFNSVNQNQFKQIQNCESAKEAWDKLAKAY 126
Query: 131 EGNEEDKETKALALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKII 190
EG K ++ L ++ ME E+IE + + + L K Y KK++
Sbjct: 127 EGTSSVKRSRIDMLASQFENLTMEETENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLL 186
Query: 191 RSLPEKW 197
R LP ++
Sbjct: 187 RCLPSRF 193
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 52.8 bits (125), Expect = 3e-07
Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Query: 34 PVFDGEKFDYCKDRIENFFLRFDTDLWDIVVYGYT--RLVDEDGVKIPREKMNGDQKKKY 91
P+FDGEK+D+ ++ F LW +V G + E+ + R K +++
Sbjct: 10 PIFDGEKYDFWSIKMATIFRT--RKLWSVVEEGVPVEPVQAEETPETARAKTL--REEAV 65
Query: 92 KDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAF 151
+ A IL A++ + + +I S+K +D L+ ++G+ + + K +L ++Y
Sbjct: 66 TNDTMALQILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENL 125
Query: 152 KMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNL 210
KM +++I+ + +L + + T +KI+ SLP K+ +V L+ +++L
Sbjct: 126 KMYDNDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDL 184
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 52.0 bits (123), Expect = 4e-07
Identities = 32/124 (25%), Positives = 66/124 (52%), Gaps = 1/124 (0%)
Query: 88 KKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKK 147
+K KDH + + L +I + I +E++K +++S++ ++GN+ + + L +
Sbjct: 20 EKTVKDH-KVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRS 78
Query: 148 YGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLS 207
+ +M+ E+I FSR + +R L + +KI+R+L EK+ +V A++ S
Sbjct: 79 FEVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEES 138
Query: 208 KNLK 211
N+K
Sbjct: 139 NNIK 142
>At3g20990 unknown protein
Length = 379
Score = 47.8 bits (112), Expect = 8e-06
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 56 DTDLWDIVVYGYT---RLVDEDGVKIPREKMNGDQKKKYKDHHRARTILLNAISYEEYEK 112
+ +LWD+V G + E KI E+++ + KD + + ++++ + K
Sbjct: 30 EKELWDVVENGVPPDPSKIPELATKIQPEELSRWRDLAVKDMKALQILQSSSLTDSAFRK 89
Query: 113 ITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESIEAMFSRF*MLIAG 172
SAK ++DSL +GN E + K L K++ K E +ES+++ R ++
Sbjct: 90 TLSASSAKDLWDSLE---KGNNE--QAKLRRLEKQFEEIKREENESLDSYIDRITEIVGK 144
Query: 173 IRVLDKCYTTVDHAKKIIRSLPEKW 197
+RVL + + KK+ S+ + +
Sbjct: 145 LRVLKVEKSEYEICKKVFASMSDSY 169
>At3g45520 copia-like polyprotein
Length = 1363
Score = 42.0 bits (97), Expect = 5e-04
Identities = 39/136 (28%), Positives = 64/136 (46%), Gaps = 8/136 (5%)
Query: 72 DEDGVKIPREKMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHE 131
DED K REKM ++KK K AR+ ++ ++S KI SA ++ ++L +
Sbjct: 54 DEDE-KEEREKMEAFEEKKRK----ARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYM 108
Query: 132 GNEEDKETKALALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIR 191
+ L +K +FKM + SIE F ++A + L+ + D A ++
Sbjct: 109 SKALPNR---IYLKQKLYSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLM 165
Query: 192 SLPEKWMPLVIALKLS 207
SLP+ + L LK S
Sbjct: 166 SLPKPFDQLKDTLKYS 181
>At3g31380 hypothetical protein
Length = 262
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/107 (27%), Positives = 48/107 (44%)
Query: 97 ARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPD 156
AR +L+ +I ++ + ++AK ++DS++ H G E KE + L+ + KM+
Sbjct: 2 ARGLLVQSIPEAFTLQVGNLQTAKEVWDSIKTRHVGAERVKEARVQTLMADFEKMKMKEA 61
Query: 157 ESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLVIA 203
E I+ R L L KK + SLP K +IA
Sbjct: 62 EKIDDFAGRLSELSTKSAPLGVNIEVPKLVKKFLNSLPRKKYIHIIA 108
>At1g36110 hypothetical protein
Length = 745
Score = 37.0 bits (84), Expect = 0.014
Identities = 25/110 (22%), Positives = 51/110 (45%), Gaps = 1/110 (0%)
Query: 97 ARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPD 156
AR ++ +I ++ +AK ++DS++ + G + KE + L+ ++ KM+
Sbjct: 60 ARGLIFQSIPESLTLQVGTLATAKLVWDSIKTRYVGADRVKEARLQTLMAEFEKMKMKES 119
Query: 157 ESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLP-EKWMPLVIALK 205
E I+ R L L T KK + +LP K++ ++ +L+
Sbjct: 120 EKIDVFAGRLAELATRSDALGSNIETSKLVKKFLNALPLRKYIHIIASLE 169
>At3g21010 unknown protein
Length = 438
Score = 36.2 bits (82), Expect = 0.025
Identities = 38/168 (22%), Positives = 71/168 (41%), Gaps = 15/168 (8%)
Query: 59 LWDIVVYGYTRLVDEDGVKIPR--EKMNGDQKKKYKD----HHRARTILLNAISYEEYEK 112
LWD+V G V D K+P + ++ K++D +A IL ++++ + K
Sbjct: 33 LWDVVENG----VPPDPSKVPELAATIQAEEFSKWRDLAEKDMKALQILQSSLTDSAFRK 88
Query: 113 ITDRESAKSIFDSLRMTHEGNEEDKETKALALIKKYGAFKMEPDESIEAMFSRF*MLIAG 172
SAK ++DSL +GN E + K L K++ M E I R ++
Sbjct: 89 TLSASSAKDLWDSL---EKGNNE--QAKLRRLEKQFEELSMNEGEPINPYIDRVIEIVEQ 143
Query: 173 IRVLDKCYTTVDHAKKIIRSLPEKWMPLVIALKLSKNLKSGGTGKYLE 220
+R + +K++ +L + + L +LK+ ++E
Sbjct: 144 LRRFKIAKSDYQVIEKVLATLSGSYDDVAPVLGDLVDLKNMSLKSFVE 191
>At3g55300 putative protein
Length = 262
Score = 35.8 bits (81), Expect = 0.032
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 131 EGNEEDKETKALA----LIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHA 186
EG E + +TK LA L K+ +FKM ++SIE L+A + LD + D A
Sbjct: 34 EGYEGNYQTKTLANMIYLKHKFTSFKMVENKSIEENLDTSLKLVADLASLDINTSDEDQA 93
Query: 187 KKIIRSLPEKWMPLVIALK 205
+ + LP ++ LV LK
Sbjct: 94 LQFMAGLPPQYDSLVDTLK 112
>At4g10460 putative retrotransposon
Length = 1230
Score = 34.3 bits (77), Expect = 0.094
Identities = 28/127 (22%), Positives = 61/127 (47%), Gaps = 4/127 (3%)
Query: 80 REKMNGDQKKKYKD-HHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKE 138
+E GD++ ++ +AR+ ++ ++S + K ++A S+ ++L +
Sbjct: 54 KESEKGDKEALMEEKRQKARSTIVLSVSDQVLRKSKKEKTAPSMLEALDKLYMSKALPNR 113
Query: 139 TKALALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWM 198
+ L +K ++KM+ + S+E F LIA + + + D A ++ SLP+++
Sbjct: 114 ---IYLKQKLYSYKMQENLSVEGNIDEFLRLIADLENTNVLVSDEDQAILLLMSLPKQFD 170
Query: 199 PLVIALK 205
L LK
Sbjct: 171 QLKDTLK 177
>At1g59265 polyprotein, putative
Length = 1466
Score = 31.6 bits (70), Expect = 0.61
Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 82 KMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKA 141
++N D + + + +L AIS ++ +A I+++LR + T+
Sbjct: 69 RVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQL 128
Query: 142 LALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLV 201
+K++ D+ ++ + +RF L +L K + ++++ +LPE++ P++
Sbjct: 129 RTQLKQWTKGTKTIDDYMQGLVTRFDQLA----LLGKPMDHDEQVERVLENLPEEYKPVI 184
>At1g58889 polyprotein, putative
Length = 1466
Score = 31.6 bits (70), Expect = 0.61
Identities = 22/120 (18%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 82 KMNGDQKKKYKDHHRARTILLNAISYEEYEKITDRESAKSIFDSLRMTHEGNEEDKETKA 141
++N D + + + +L AIS ++ +A I+++LR + T+
Sbjct: 69 RVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQL 128
Query: 142 LALIKKYGAFKMEPDESIEAMFSRF*MLIAGIRVLDKCYTTVDHAKKIIRSLPEKWMPLV 201
+K++ D+ ++ + +RF L +L K + ++++ +LPE++ P++
Sbjct: 129 RTQLKQWTKGTKTIDDYMQGLVTRFDQLA----LLGKPMDHDEQVERVLENLPEEYKPVI 184
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.343 0.150 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,495,459
Number of Sequences: 26719
Number of extensions: 259842
Number of successful extensions: 1444
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 33
length of query: 323
length of database: 11,318,596
effective HSP length: 99
effective length of query: 224
effective length of database: 8,673,415
effective search space: 1942844960
effective search space used: 1942844960
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0247.1