BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0243.9
(310 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38470 putative WRKY-type DNA binding protein 34 0.088
At3g28910 MYB family transcription factor (hsr1), putative 32 0.44
At5g65540 unknown protein 32 0.57
At1g59660 nucleoporin 98-like protein 30 1.3
At5g11930 glutaredoxin - like protein 30 1.7
At5g65480 putative protein 29 2.8
At1g30260 unknown protein 29 3.7
At5g46340 unknown protein 28 4.9
At4g36490 hypothetical protein 28 4.9
At4g19460 unknown protein 28 4.9
At3g22750 putative protein kinase 28 4.9
At2g45680 putative PCF2-like DNA binding protein 28 6.3
At1g63360 disease resistance protein, putative 28 6.3
At1g29890 unknown protein 28 6.3
At4g20070 hyuC-like protein 28 8.3
>At2g38470 putative WRKY-type DNA binding protein
Length = 512
Score = 34.3 bits (77), Expect = 0.088
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 157 EKGVLEGAFQTLHSGYFRLFPFSFF--SLPLSPPLTSTISSSTGTISSSSTTKKKTSRGV 214
+KG+ EG ++ F LF FSF S +S P T+T +++T T ++SS + + +
Sbjct: 91 QKGINEG--DKSNNNNFNLFDFSFHTQSSGVSAPTTTTTTTTTTTTTNSSIFQSQEQQKK 148
Query: 215 GRSEELQIWCESKGRVPDLVRQWLYGSDPALNGEEQW-WRNLG 256
+SE+ W +++ R + + Y GE+ + WR G
Sbjct: 149 NQSEQ---WSQTETRPNN--QAVSYNGREQRKGEDGYNWRKYG 186
>At3g28910 MYB family transcription factor (hsr1), putative
Length = 323
Score = 32.0 bits (71), Expect = 0.44
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 3/69 (4%)
Query: 185 LSPPLTSTISSSTGTISSSSTTKKKTSRGVG--RSEELQ-IWCESKGRVPDLVRQWLYGS 241
LSP + I+S+ T SSS+ +++ TS G R++E + S + L++ W+ S
Sbjct: 171 LSPAVAPIITSTVTTTSSSAESRRSTSSASGFLRTQETSTTYASSTENIAKLLKGWVKNS 230
Query: 242 DPALNGEEQ 250
N +Q
Sbjct: 231 PKTQNSADQ 239
>At5g65540 unknown protein
Length = 605
Score = 31.6 bits (70), Expect = 0.57
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 13 GRGWRAAQRKVVSGVW--WVGFGTVKEYYQKLDGTKIWVVLMLLERLK 58
GRG+ A++ VSGVW W+G ++ L W M ++ K
Sbjct: 8 GRGFDLARKLEVSGVWRTWLGDSIYSSFHHYLSSPSTWEAFMRVDESK 55
>At1g59660 nucleoporin 98-like protein
Length = 997
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (55%)
Query: 181 FSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRS 217
F P +P ST+S++T SSS+ TS+ +G S
Sbjct: 451 FGQPTTPSFRSTVSNTTSVFGSSSSLTTNTSQPLGSS 487
>At5g11930 glutaredoxin - like protein
Length = 148
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 184 PLSPPLTSTISSSTGTISSSSTTKKKTSRGVGR 216
PL PP ST+SSST + S S ++ + +GR
Sbjct: 28 PLPPPAPSTVSSSTASTSLSFDEEETSESKIGR 60
>At5g65480 putative protein
Length = 153
Score = 29.3 bits (64), Expect = 2.8
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 182 SLPLSPPLTSTISSSTGTISSSSTTKKKTSRG-VGR 216
S LSP L T +S TG SSS++ KKT RG +GR
Sbjct: 31 SSSLSPSLKKTTTSKTG---SSSSSVKKTKRGWIGR 63
>At1g30260 unknown protein
Length = 97
Score = 28.9 bits (63), Expect = 3.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 175 LFPFSFFSLPLSPPLTSTISSSTGTISSSST 205
+FP SF S +S P TS SSS + S+S++
Sbjct: 45 IFPSSFNSKKISSPFTSPYSSSVSSASASAS 75
>At5g46340 unknown protein
Length = 540
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 23 VVSGVWWVGFGTVKEYYQKLDGTKIWVVLMLLERLKFIVALC 64
+ + VW GFG YY + D + ++ RL F VA C
Sbjct: 206 IAAYVWMTGFGNFSYYYVRKD-FSVARFAQMMWRLNFFVAFC 246
>At4g36490 hypothetical protein
Length = 543
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 189 LTSTISSSTGTISSSSTTKKKTSRGVGRSEELQIWCESKGRVPDLVRQW 237
L + IS S + TKK +GR EEL + E K + L W
Sbjct: 495 LNAAISRSNVLEQELAATKKALDDSLGRQEELVAYIEKKKKKKKLFNYW 543
>At4g19460 unknown protein
Length = 796
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 170 SGYFRLFPFSFFSLPLSPPL-----TSTISSSTGTISSSST 205
+ +F L F FF++ + P TST SSST +SSSS+
Sbjct: 11 NSHFSLCTFLFFTVLFTIPALFLLRTSTCSSSTAAVSSSSS 51
>At3g22750 putative protein kinase
Length = 378
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 131 VMVLEG-ERRRGGGRIPPARRPGCF 154
V +LE + +GGG IP +RPGCF
Sbjct: 346 VSLLEAVDTTKGGGMIPEDQRPGCF 370
>At2g45680 putative PCF2-like DNA binding protein
Length = 356
Score = 28.1 bits (61), Expect = 6.3
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 6/62 (9%)
Query: 181 FSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRSEELQIWCESKGRVPDLVRQWLYG 240
FS+ L+PP SSTG ++TK + ++ GR +++ R+ L R+ +
Sbjct: 56 FSMSLAPP------SSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHK 109
Query: 241 SD 242
SD
Sbjct: 110 SD 111
>At1g63360 disease resistance protein, putative
Length = 884
Score = 28.1 bits (61), Expect = 6.3
Identities = 10/28 (35%), Positives = 18/28 (63%)
Query: 207 KKKTSRGVGRSEELQIWCESKGRVPDLV 234
K++ +RG+ R E Q+W +S V D++
Sbjct: 56 KREEARGLQRLSEFQVWLDSVATVEDII 83
>At1g29890 unknown protein
Length = 398
Score = 28.1 bits (61), Expect = 6.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 19 AQRKVVSG-VWWVGFGTVKEYYQKLDGTKIWVVLMLLERLKFIVALC 64
A R ++G VW GFG YY + D + M+ RL F VA C
Sbjct: 137 AIRVFIAGYVWMTGFGNFSYYYIRKDFSLARFTQMMW-RLNFFVAFC 182
>At4g20070 hyuC-like protein
Length = 525
Score = 27.7 bits (60), Expect = 8.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 175 LFPFSFFSLPLSPPLTSTISSSTGTISSSSTTKKKTSRGVGRSE 218
LF FSL L+S+ SSS+ + SSS++ S G+G +E
Sbjct: 38 LFWCLVFSLLSPLALSSSSSSSSSSSDSSSSSSSHISLGIGETE 81
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.139 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,705,107
Number of Sequences: 26719
Number of extensions: 336904
Number of successful extensions: 1018
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 16
length of query: 310
length of database: 11,318,596
effective HSP length: 99
effective length of query: 211
effective length of database: 8,673,415
effective search space: 1830090565
effective search space used: 1830090565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0243.9