BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0240.1
(1666 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20390 hypothetical protein 583 e-166
At3g31530 hypothetical protein 399 e-110
At2g15410 putative retroelement pol polyprotein 334 3e-91
At2g13330 F14O4.9 313 7e-85
At2g14400 putative retroelement pol polyprotein 277 3e-74
At2g14380 putative retroelement pol polyprotein 241 3e-63
At4g10580 putative reverse-transcriptase -like protein 234 2e-61
At2g10780 pseudogene 233 7e-61
At2g04670 putative retroelement pol polyprotein 230 6e-60
At4g03800 226 9e-59
At2g14650 putative retroelement pol polyprotein 223 6e-58
At1g37200 hypothetical protein 220 5e-57
At3g11970 hypothetical protein 216 9e-56
At1g36590 hypothetical protein 216 9e-56
At2g07660 putative retroelement pol polyprotein 214 3e-55
At1g35370 hypothetical protein 196 7e-50
At2g06890 putative retroelement integrase 179 9e-45
At4g07600 177 3e-44
At2g10690 putative retroelement pol polyprotein 174 3e-43
At4g03650 putative reverse transcriptase 169 9e-42
>At1g20390 hypothetical protein
Length = 1791
Score = 583 bits (1502), Expect = e-166
Identities = 329/868 (37%), Positives = 495/868 (56%), Gaps = 29/868 (3%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGK 867
EL + KPVKQ R+ P+ + EE+E+LL+ I +Y +WLAN V V KKNGK
Sbjct: 768 ELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGK 827
Query: 868 MRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTA 927
RVC+D+ DLN A PKD Y +P + +V++ +G+ LS +D +SGYNQI + ++D KT+
Sbjct: 828 WRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTS 887
Query: 928 FRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQL 987
F GTY + VM FGLKNAGATYQR +N + D I ++VYIDD++VKS +D +
Sbjct: 888 FVTDR--GTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHV 945
Query: 988 LHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSK 1047
HL K F+ + YG+K+NP KC FGV +G+FLG+VV K+GIE N + +AIL+ P +
Sbjct: 946 EHLSKCFDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNA 1005
Query: 1048 KQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPP 1107
+++Q L G+I L RFI ++K F L LK+ F W+ + ++AF++LK YLS+PP
Sbjct: 1006 REVQRLTGRIAALNRFISRSTDKCLPFYNL--LKRRAQFDWDKDSEEAFEKLKDYLSTPP 1063
Query: 1108 VMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCL 1167
++ P G+ + LYI+ ++ + S+L +ED ++R IFY S+ L +AETRY +IEK L
Sbjct: 1064 ILVKPEVGETLYLYIAVSDHAVSSVLVRED-RGEQRPIFYTSKSLVEAETRYPVIEKAAL 1122
Query: 1168 CLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAPLKAV 1227
+ S KL+ Y + + V + ++ L P R+ KWA+ L+EY + + P A+
Sbjct: 1123 AVVTSARKLRPYFQSHTIAVLTDQP-LRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAM 1181
Query: 1228 KGQAVADFLVDHTL--PKEIVTYVGVQPWKLFFDGSSHKNGTGIGMFIVSPGGTPTKFKF 1285
K Q +ADFL++ L + V+ + W L+ DGSS G+GIG+ +VSP + F
Sbjct: 1182 KSQVLADFLIELPLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSF 1241
Query: 1286 RIKKKCSNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQLTKEYKCISENLAKYYT 1345
R++ +NN AEYE LI+ L + + + DS+L+ QL+ EY+ +E + Y
Sbjct: 1242 RLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLK 1301
Query: 1346 KANNLLAKFDDARLGHVSRIDNQEANELAQIASGYMVDKYRLKELIEV----KEKLNPSD 1401
+ F++ +L + R DN A+ LA +A + L+ +I V K ++ +D
Sbjct: 1302 IVQLMTKDFENFKLSKIPRGDNAPADALAALA---LTSDSDLRRIIPVESIDKPSIDSTD 1358
Query: 1402 LNVLV--------IDNMAPKDWRKPIVDYLQNPVGTTD----RKTKYRAMSYVIMGNELF 1449
+V D P DWR I DYL + +D R+ + +A Y +M L
Sbjct: 1359 AVEIVNTIRSSNAPDPADPTDWRVEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLL 1418
Query: 1450 KKNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYA 1509
K + G +L CL + + H+G G H G + L + G YWPT++ DC +
Sbjct: 1419 KVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFT 1478
Query: 1510 KGCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTK 1569
C+ CQRHA H P L + + P+PF WA+D++G + +SRQ ++I+V DYFTK
Sbjct: 1479 AKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVGPMP--ASRQKRFILVMTDYFTK 1536
Query: 1570 WVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTS 1629
WVEA + + V +F+ I+ R GLP + TD G+ F+ +F SW I+L S
Sbjct: 1537 WVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKIRLNKS 1596
Query: 1630 TPYYAQANGQVEAANKTLISLIKNILVE 1657
TP Y Q NGQ EA NKT++S +K L E
Sbjct: 1597 TPRYPQGNGQAEATNKTILSGLKKRLDE 1624
Score = 73.6 bits (179), Expect = 9e-13
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 6/153 (3%)
Query: 435 HLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTG 494
H PL V + + V +VL+D G++++L+ K +L + T+ + P L+ ++G
Sbjct: 567 HNDPLVVELIISDSRVTRVLIDTGSSVDLIFKDVLTAMNITDRQIKPVSKPLAGFDGDFV 626
Query: 495 SSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKADG 554
++G I L I VG + F+V+ A YN++LG WIH + A+PST HQ + +G
Sbjct: 627 MTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG 686
Query: 555 FV------ENVQADQSYYLAETGYVSKKNFDKS 581
E +SY +E N D+S
Sbjct: 687 IFTLRAPKEAKTPSRSYEESELCRTEMVNIDES 719
>At3g31530 hypothetical protein
Length = 831
Score = 399 bits (1024), Expect = e-110
Identities = 251/743 (33%), Positives = 376/743 (49%), Gaps = 93/743 (12%)
Query: 921 EDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKS 980
ED KTAF + Y VMPFGLKNAGATY+R +N IF I M+VYIDD++VKS
Sbjct: 99 EDQEKTAFYTEQGIFCYR--VMPFGLKNAGATYERFVNKIFALQIGKTMEVYIDDMLVKS 156
Query: 981 PSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILD 1040
+ D + HLR+ F+++ Y +K+NP KC FGV + GIE N + +A+L
Sbjct: 157 MTEKDHISHLRECFKQLNLYNVKLNPAKCRFGV-----------RSGIEANPKQIEALLG 205
Query: 1041 TNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELK 1100
P +K+++Q L G++ L RFI +EK +F +LR K+ F W ++AF ELK
Sbjct: 206 MASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRRNKK--FEWTTRCEEAFQELK 263
Query: 1101 AYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYT 1160
YL++PP++A P+ G+P LY++ ++ + L +ED +++ IFY+S+ AE+RY
Sbjct: 264 KYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVRED-RGEQKLIFYVSQTFTSAESRYP 322
Query: 1161 MIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLT 1220
+EKL L + S KL+ Y + ++V ++ +L P R+ KW + L+EY +
Sbjct: 323 QMEKLALAVVMSAQKLRPYFQSHSIIVMGSMP-LRVILHSPSQSGRLAKWTIELSEYDIE 381
Query: 1221 YAPLKAVKGQAVADFLVDHTLP-KEIVTYVGVQPWKLFFDGSSHKNGTGIGMFIVSPGGT 1279
Y K Q +ADF+V+ LP KE W L DGSS K G+G+G+ + SP G
Sbjct: 382 YQNKTCAKSQVLADFIVE--LPTKEARENPLDTTWLLHVDGSSSKQGSGVGIRLTSPTGE 439
Query: 1280 PTKFKFRIKKKCSNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQLTKEYKCISEN 1339
T NN AEYEAL++ L + L DS+L+ Q EY +
Sbjct: 440 AT-----------NNVAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKK 488
Query: 1340 LAKYYTKANNLLAKFDDARLGHVSRIDNQEANELAQIASGYMVDKYRLKELIEVKEKLNP 1399
+ Y NL FD+ L + R +N A+ LA +AS LK +I V+ P
Sbjct: 489 MEAYLIHVQNLAKNFDEFELTRIPRGENTSADALAALAS---TSDTSLKRVIPVEFIEKP 545
Query: 1400 S-----DLNVLVIDNMAPKD--------WRKPIVDYLQNPVGTTD----RKTKYRAMSYV 1442
S + +VL I A +D W +PI+ Y+ +D RK K +A +V
Sbjct: 546 SIELGKEEHVLPIQISADQDDPDDCNSEWMEPIISYISEGKLPSDKWKARKLKAQAARFV 605
Query: 1443 IMGNELFKKNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIM 1502
++ +L+K + G L+ C+ + + +H G
Sbjct: 606 LVDTKLYKWRLSGPLMTCVEAEAICKIMKEIHSG-------------------------- 639
Query: 1503 KDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIV 1562
HA H PA L SI P+PF W++D+IG ++P S+Q K ++V
Sbjct: 640 --------------SHAPTIHQPAELLSSIASPYPFMRWSMDIIGPMHP--SKQKKLVLV 683
Query: 1563 AIDYFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESW 1622
DYF+KW+EA ++ V +F+ HI+ R G+P + TD G+ F+ + F + W
Sbjct: 684 LTDYFSKWIEAESYASIKDAQVENFVLKHILCRHGIPYEIVTDNGSQFISTRFQGFCDKW 743
Query: 1623 GIKLLTSTPYYAQANGQVEAANK 1645
GI+L STP Y Q NGQ EAAN+
Sbjct: 744 GIRLSKSTPRYPQGNGQAEAANE 766
Score = 33.5 bits (75), Expect = 1.1
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 496 SLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRI------SI 549
+LG I L + V + F + YN ++G W++ AV ST H + S+
Sbjct: 2 TLGTIKLPVRAKGVTKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKFPTSDSV 61
Query: 550 WKADGFVENVQADQSYYLAETGY 572
W+ G L ET Y
Sbjct: 62 WEKLGHERAEAVKAENQLLETSY 84
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 334 bits (856), Expect = 3e-91
Identities = 205/588 (34%), Positives = 305/588 (51%), Gaps = 71/588 (12%)
Query: 798 AWPQSRIGGI-------ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTAR 850
AW + GI EL + KP+KQ R+ PD + EE+++LL I R
Sbjct: 756 AWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVR 815
Query: 851 YVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGY 910
Y DWL N V V KKNGK RVCIDF DLN A PKD + +P + +V++ AG+E LS +D +
Sbjct: 816 YPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAF 875
Query: 911 SGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQ 970
SGYNQI + + D KT F GTY + VMPFGLKNAGATY R++N +F D ++ M+
Sbjct: 876 SGYNQILMHQNDREKTVFITDQ--GTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSME 933
Query: 971 VYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEI 1030
VYIDD++VKS ++ + HLR+ F+ + +Y +K+NP KC FGV +G+FLG++V ++GIE
Sbjct: 934 VYIDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEA 993
Query: 1031 NKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEA 1090
N + AI+D P + +++Q L+G+I L RFI ++K F LLR K F W+
Sbjct: 994 NPKQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKR--FEWDE 1051
Query: 1091 EHQKAFDELKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSR 1150
+ ++ G+ + LYI+ + + +L +ED ++ IFY+S+
Sbjct: 1052 KCEE--------------------GETLYLYIAVSTSAVSGVLVRED-RGEQHPIFYVSK 1090
Query: 1151 VLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKW 1210
L+ AE RY +EKL + S KL+ Y K V V ++ ++ +L P R+ KW
Sbjct: 1091 TLDGAELRYPTLEKLAFAVVISARKLRPYFKSYTVEVLTNQP-LRTILHSPSQSGRLAKW 1149
Query: 1211 ALALTEYSLTYAPLKAVKGQAVADFLVDHTLPKEIVTYVGVQPWKLFFDGSSHKNGTGIG 1270
A+ L+EY + Y K H P +P++
Sbjct: 1150 AVELSEYDIAYKNRTCAK---------SHRAP--------TRPYR--------------- 1177
Query: 1271 MFIVSPGGTPTKFKFRIKKKCSNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQLT 1330
P + + SNNEAEYEALI+ L + + + + DS+LV Q +
Sbjct: 1178 ------RSIPCRKVDLARFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFS 1231
Query: 1331 KEYKCISENLAKYYTKANNLLAKFDDARLGHVSRIDNQEANELAQIAS 1378
Y+ +E + Y L F+ L + R DN A+ LA +AS
Sbjct: 1232 GNYEAKNERMDAYLKVVRELSYNFEVFELTKIPRSDNAPADALAVLAS 1279
Score = 177 bits (448), Expect = 6e-44
Identities = 90/254 (35%), Positives = 134/254 (52%), Gaps = 6/254 (2%)
Query: 1408 DNMAPKDWRKPIVDYLQNPVGTTD----RKTKYRAMSYVIMGNELFKKNVDGTLLKCLSD 1463
D+ A +W + I Y+ + + D R+ + R+ Y + L + + G LL CL D
Sbjct: 1369 DSPASTNWIEEIRSYIADRIVPKDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDD 1428
Query: 1464 DDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQH 1523
++A + +H+G G H G + + + G YWPT+ DC ++ C+ CQ HA H
Sbjct: 1429 EEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIH 1488
Query: 1524 VPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQNVTQDT 1583
+P+ L + + P+PF WA+D+I +SRQ KYI+V DYFTKW EA +
Sbjct: 1489 IPSEVLQTAMPPYPFMRWAMDIIRPFP--ASRQKKYILVMTDYFTKWFEAESYARIQSKE 1546
Query: 1584 VIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAA 1643
V +F+ +I+ GLP + TD GT F + F W I+L STP Y Q NGQ EA
Sbjct: 1547 VQNFVWKNIICHHGLPYEIVTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEAT 1606
Query: 1644 NKTLISLIKNILVE 1657
NKT++ +K L E
Sbjct: 1607 NKTILDGLKKRLDE 1620
>At2g13330 F14O4.9
Length = 889
Score = 313 bits (801), Expect = 7e-85
Identities = 187/519 (36%), Positives = 281/519 (54%), Gaps = 41/519 (7%)
Query: 862 IKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEE 921
++KNGK RVCIDFRDLN A PKD + +P + +V++ HE LS +D + GYNQI + +
Sbjct: 288 LEKNGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRD 347
Query: 922 DVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSP 981
KTAF GTY + VMPFGLKNAG TYQR++N +F D + ++VYIDD++VKS
Sbjct: 348 GQEKTAFITDR--GTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSA 405
Query: 982 SRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDT 1041
D + LR+ F+ + K+ +K+NP KC+F V + +FL ++V ++GIE N + A ++
Sbjct: 406 HEKDHVPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEM 465
Query: 1042 NPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKA 1101
P +++Q L G+I L FI + K F LR KE F W + ++AF +LKA
Sbjct: 466 PSPKMAREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKE--FDWNKDCEQAFKQLKA 523
Query: 1102 YLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTM 1161
YL+ PP++A P G+P+ LY + + R
Sbjct: 524 YLTEPPILAKPEKGEPLYLY-------------------------------TNRDKRCPA 552
Query: 1162 IEKLCLCLYFSCVKLKYYIK--PIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSL 1219
+EKL L + S KL+ Y + PI VM I H L++ R+ KWA+ L EY +
Sbjct: 553 MEKLALTVVMSVRKLRLYFQSHPIVVMTSQPIRTILHSLTQS---GRLAKWAIELREYDI 609
Query: 1220 TYAPLKAVKGQAVADFLVDHTLPKEIVTYVGVQPWKLFFDGSSHKNGTGIGMFIVSPGGT 1279
Y ++K Q +ADF++ L T + W L DGSS++ G+G+G+ + SP G
Sbjct: 610 EYRTRTSLKAQVLADFVIKLPLADLDGTNSN-KKWLLHVDGSSNRQGSGVGIQLTSPTGE 668
Query: 1280 PTKFKFRIKKKCSNNEAEYEALISSLEILIALGARNVVVKGDSELVIKQLTKEYKCISEN 1339
+ ++ SNNE+EYEALI+ +++ G R + DS+LV Q EY+ E
Sbjct: 669 VIEQSLQLGFNASNNESEYEALIAGIKLAQEKGIREIHAYSDSQLVTSQFHGEYEAKDER 728
Query: 1340 LAKYYTKANNLLAKFDDARLGHVSRIDNQEANELAQIAS 1378
+ Y L +F+ +L + R +N A+ LA +AS
Sbjct: 729 MEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALAS 767
Score = 66.2 bits (160), Expect = 1e-10
Identities = 39/119 (32%), Positives = 63/119 (52%)
Query: 429 TEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSD 488
T+ K H L + V ++ ++VD G++++++ K+ G ++ L L+
Sbjct: 55 TDLDKPHDDALVIRIDVGNYELSCIMVDTGSSVDVLFYDAFKRTGHLDSKLQGRKTPLTG 114
Query: 489 YEGKTGSSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRI 547
+ G T S+G I L V + T F+VV KA +N +LGR W+H + AVPST HQ I
Sbjct: 115 FAGDTTFSIGTIQLPTIARGVRQLTNFLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCI 173
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 277 bits (709), Expect = 3e-74
Identities = 140/316 (44%), Positives = 210/316 (66%), Gaps = 5/316 (1%)
Query: 833 IKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAE 892
+ +E+++LL+ IR +Y DWLAN V V KKNGK RVCIDF DLN A PKD + +P +
Sbjct: 480 VNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHID 539
Query: 893 MMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGAT 952
+V+S AG+E LS +D +SGYNQI + ED KT F G Y + VMPFGL+NAGAT
Sbjct: 540 RLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDR--GIYCYKVMPFGLRNAGAT 597
Query: 953 YQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFG 1012
Y R++N +F + + M+VYIDD+++KS ++D + HL + F + +Y +K+NP KC FG
Sbjct: 598 YPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFG 657
Query: 1013 VIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTK 1072
V +G+FLG++V K+GIE N N+ A L+ P + K++Q L G+I L RFI ++K+
Sbjct: 658 VPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTGRIAALNRFISRSTDKSL 717
Query: 1073 SFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSM 1132
F +L+ KE F W+ + ++AF +LKAYL+SPPV+ P + + LY+S +N + +
Sbjct: 718 PFYQILKGNKE--FLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGV 775
Query: 1133 LAQEDENSKERAIFYL 1148
L +ED +++ I+Y+
Sbjct: 776 LIRED-RGEQKPIYYI 790
Score = 128 bits (321), Expect = 3e-29
Identities = 73/217 (33%), Positives = 111/217 (50%), Gaps = 44/217 (20%)
Query: 1446 NELFKKNVDGTLLKCLSDDDALIAISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDC 1505
N L+++ V L + I +S VH+GLCG+H +G M + + + YWPT++ DC
Sbjct: 951 NSLYRRGVSDPYLLSIFGPVVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDC 1010
Query: 1506 MEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAID 1565
++YA+ C+ CQ HA + H P+ SI P+PF W++D+IG ++ S+R +Y++V D
Sbjct: 1011 VKYAQRCKRCQLHAPLIHQPSELFSSISAPYPFMRWSMDIIGPLHR-STRGVQYLLVLTD 1069
Query: 1566 YFTKWVEAIPLQNVTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIK 1625
YF+KW+EA + +WGIK
Sbjct: 1070 YFSKWIEA------------------------------------------EAILLNWGIK 1087
Query: 1626 LLTSTPYYAQANGQVEAANKTLISLIKNILVENLKDG 1662
+ ST Y Q NGQ EAANKT++S +K L +LK G
Sbjct: 1088 VSYSTLRYPQGNGQAEAANKTILSNLKKRL-NHLKGG 1123
>At2g14380 putative retroelement pol polyprotein
Length = 764
Score = 241 bits (615), Expect = 3e-63
Identities = 126/272 (46%), Positives = 175/272 (64%), Gaps = 2/272 (0%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGK 867
EL + K VKQ R+ P+ + +E+++LL I +Y +WLAN V V KKN K
Sbjct: 488 ELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLANPVVVKKKNDK 547
Query: 868 MRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTA 927
RVCIDF DLN A PKD + +P + MV++ G+E LS +D +SGYNQI + ++D KT+
Sbjct: 548 WRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQIPMHKDDQEKTS 607
Query: 928 FRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQL 987
F GTY + VMPFGLKN GA YQR++N +F + M+VYIDD++VKS D +
Sbjct: 608 FIIDR--GTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLVKSTRSADHI 665
Query: 988 LHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSK 1047
HL+ FE + KY +K+NP KC FGV +G+FLG++V K+GIE N + +AILD P +K
Sbjct: 666 DHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAILDLQSPRNK 725
Query: 1048 KQLQSLLGKINFLRRFIVNLSEKTKSFSPLLR 1079
K++Q L G+I L RFI ++K+ F LLR
Sbjct: 726 KEVQRLTGRIAGLNRFIARSTDKSLPFYQLLR 757
Score = 77.0 bits (188), Expect = 8e-14
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 435 HLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTG 494
H PL + + E V ++L+D G+++N++ K +L+K+ + + P L+ ++G T
Sbjct: 344 HNDPLVIELHIGESEVTRILIDTGSSVNVVFKDVLQKMKVHDRHIKPSVRPLTGFDGNTM 403
Query: 495 SSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKADG 554
+ G I L I +G A F+VV YN++LG WIH + A+PS+ HQ I I + G
Sbjct: 404 MTNGTIKLPIYLGGAATWHKFVVVDKPTIYNIILGTPWIHDMQAIPSSYHQCIKIPTSIG 463
Query: 555 FVENVQADQS 564
+E ++ +Q+
Sbjct: 464 -IETIRGNQN 472
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 234 bits (598), Expect = 2e-61
Identities = 146/430 (33%), Positives = 236/430 (53%), Gaps = 14/430 (3%)
Query: 800 PQSRIGGIELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVV 859
P S+ + ++ P+ + P R P + ++K++++ LL FIR + W A V+
Sbjct: 474 PPSQSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTS-PWGAPVL 532
Query: 860 PVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA 919
V KK+G R+CID+R+LN T K+ Y +P + ++D G S +D SGY+QI IA
Sbjct: 533 FVKKKDGSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIA 592
Query: 920 EEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVK 979
E DV KTAFR G +E+VVMPFGL NA A + R+MN++F +F++ F+ ++IDDI+V
Sbjct: 593 EADVRKTAFRT--RYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVY 650
Query: 980 SPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAIL 1039
S S ++Q +HLR+ E++R+ L KC+F FLG +V +G+ ++ K +AI
Sbjct: 651 SKSPEEQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIR 710
Query: 1040 DTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDT-FRWEAEHQKAFDE 1098
D PT+ +++S LG + RRF+ + + P+ +L +D F W E ++ F
Sbjct: 711 DWPRPTNATEIRSFLGWAGYYRRFVKGFASMAQ---PMTKLTGKDVPFVWSQECEEGFVS 767
Query: 1099 LKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETR 1158
LK L+S PV+A P G+P +Y A+ +G +L Q + I Y SR L E
Sbjct: 768 LKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQHG-----KVIAYASRQLMKHEGN 822
Query: 1159 YTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYS 1218
Y + + F+ + Y+ V VF+ + +K++ ++P L+ R +W + +Y
Sbjct: 823 YPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVADYD 882
Query: 1219 L--TYAPLKA 1226
L Y P KA
Sbjct: 883 LEIAYHPGKA 892
>At2g10780 pseudogene
Length = 1611
Score = 233 bits (594), Expect = 7e-61
Identities = 148/440 (33%), Positives = 239/440 (53%), Gaps = 17/440 (3%)
Query: 800 PQSRIGGIELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVV 859
P R + ++ P+ + P R P + K+K+++E LL FIR + W A V+
Sbjct: 642 PPDRSDPFTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSS-PWGAPVL 700
Query: 860 PVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA 919
V KK+G R+CID+R LN T K++Y +P + ++D G ++ S +D SGY+QI I
Sbjct: 701 FVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIE 760
Query: 920 EEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVK 979
DV KTAFR +E+VVMPFGL NA A + ++MN +F DF++ F+ ++I+DI+V
Sbjct: 761 PTDVRKTAFRT--RYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVY 818
Query: 980 SPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAIL 1039
S S + HLR ER+R++ L KC+F + FLG V+ +G+ ++ K ++I
Sbjct: 819 SKSWEAHQEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIK 878
Query: 1040 DTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDT-FRWEAEHQKAFDE 1098
+ P + +++S LG + RRF+++ + + PL RL +DT F W E +K+F E
Sbjct: 879 EWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQ---PLTRLTGKDTAFNWSDECEKSFLE 935
Query: 1099 LKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETR 1158
LKA L++ PV+ P G+P +Y A+ +G +L Q K I Y SR L E
Sbjct: 936 LKAMLTNAPVLVLPEEGEPYTVYTDASIVGLGCVLMQ-----KGSVIAYASRQLRKHEKN 990
Query: 1159 YTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYS 1218
Y + + F + Y+ V +++ + +K++ ++P L+ R +W + +Y+
Sbjct: 991 YPTHDLEMAAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQRRWMELVADYN 1050
Query: 1219 L--TYAPLKAVKGQAVADFL 1236
L Y P KA VAD L
Sbjct: 1051 LDIAYHPGKA---NQVADAL 1067
Score = 55.8 bits (133), Expect = 2e-07
Identities = 46/202 (22%), Positives = 87/202 (42%), Gaps = 5/202 (2%)
Query: 1460 CLSDDDALIA--ISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQR 1517
C+ +D AL + H H KM L R +W + KD + C CQ
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHWVGMKKDVARWVAKCPTCQL 1210
Query: 1518 HAGIQHVPASELHSI-IKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPL 1576
VP+ L ++ I W + +D + + +H + V +D TK + +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270
Query: 1577 QNVTQDTVI-DFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQ 1635
+ +I + + IV G+P S+ +D+ T F + +F ++ G ++ ST Y+ Q
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIPVSIVSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQ 1330
Query: 1636 ANGQVEAANKTLISLIKNILVE 1657
+ Q E +TL +++ +++
Sbjct: 1331 TDEQSERTIQTLEDMLRACVLD 1352
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 230 bits (586), Expect = 6e-60
Identities = 149/440 (33%), Positives = 238/440 (53%), Gaps = 17/440 (3%)
Query: 800 PQSRIGGIELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVV 859
P SR + ++ P+ + P R P + ++K+++E LL FIR + W A V+
Sbjct: 500 PPSRSDPFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTS-PWGAPVL 558
Query: 860 PVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA 919
V KK+G R+CID+R LN T K++Y +P + ++D G S +D SGY+QI IA
Sbjct: 559 FVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIA 618
Query: 920 EEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVK 979
E DV KTAFR G +E+VVMPF L NA A + R+MN++F +F++ F+ ++IDDI+V
Sbjct: 619 EADVRKTAFRT--RYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 676
Query: 980 SPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAIL 1039
S S ++ +HLR+ E++R+ L KC+F FLG +V +G+ ++ K +AI
Sbjct: 677 SKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIR 736
Query: 1040 DTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDT-FRWEAEHQKAFDE 1098
D PT+ +++S L + RRF+ + + P+ +L +D F W E ++ F
Sbjct: 737 DWPRPTNATEIRSFLRLTGYYRRFVKGFASMAQ---PMTKLTGKDVPFVWSPECEEGFVS 793
Query: 1099 LKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETR 1158
LK L+S PV+A P G+P +Y A+ +G +L Q + + I Y SR L E
Sbjct: 794 LKEMLTSTPVLALPEHGQPYMVYTDASRVGLGCVLMQ-----RGKVIAYASRQLRKHEGN 848
Query: 1159 YTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYS 1218
Y + + F+ + Y+ V VF+ + +K++ ++P L+ R +W + +Y
Sbjct: 849 YPTHDLEMAVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQMRWMELVADYD 908
Query: 1219 L--TYAPLKAVKGQAVADFL 1236
L Y P KA VAD L
Sbjct: 909 LEIAYHPGKA---NVVADAL 925
Score = 36.2 bits (82), Expect = 0.16
Identities = 42/201 (20%), Positives = 72/201 (34%), Gaps = 36/201 (17%)
Query: 1460 CLSDDDALIA--ISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQR 1517
C+ D+ L +S H + H KM L R W + +D + C CQ
Sbjct: 1008 CVPKDEELRREILSEAHASMFSIHPGATKMYRDLKRY-YQWVGMKRDVANWVAECDVCQL 1066
Query: 1518 HAGIQHVPASELHSIIKPWPFRGWALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQ 1577
VP + I V +D TK + ++
Sbjct: 1067 VKAEHQVPDA--------------------------------IWVIMDRLTKSAHFLAIR 1094
Query: 1578 NVTQDTVI-DFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQA 1636
V+ + IV G+P S+ +D+ + F +F G K+ ST Y+ Q
Sbjct: 1095 KTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQT 1154
Query: 1637 NGQVEAANKTLISLIKNILVE 1657
+GQ E +TL +++ +++
Sbjct: 1155 DGQSERTIQTLEDMLRMCVLD 1175
>At4g03800
Length = 637
Score = 226 bits (576), Expect = 9e-59
Identities = 125/331 (37%), Positives = 193/331 (57%), Gaps = 27/331 (8%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGK 867
EL + KP+KQ R+ + + +I++LL+ IR +Y DW+A V V KKNGK
Sbjct: 332 ELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWVAITVVVKKKNGK 391
Query: 868 MRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTA 927
RVCIDF DLN A PKD + +P + +V+S AG+E L+ +D + GYNQI + ED KT+
Sbjct: 392 DRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQIMMNPEDQEKTS 451
Query: 928 FRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQL 987
F + + GATYQ ++N +F++ + M+V IDD +VKS ++D +
Sbjct: 452 F-----------------ITDRGATYQWLVNKMFNEHLRKTMEVSIDDTLVKSLKKEDHV 494
Query: 988 LHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSK 1047
HL + FE + +Y +K+N KC FGV +G+FLG++V K+GIE N N+ A L T +
Sbjct: 495 KHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLKTPSLRNF 554
Query: 1048 KQLQSLLGKINFLRRFIVNLSEKTKSFSPLLR-LKKEDTFRWEAEHQKAFDELKAYLSSP 1106
K++Q L G+I S T P + LK + F W+ + ++AF +LKAYL++P
Sbjct: 555 KEVQRLTGRI---------ASRSTDKSLPFYQILKGNNGFLWDEKCEEAFRQLKAYLTTP 605
Query: 1107 PVMAPPIGGKPMKLYISATNGTIGSMLAQED 1137
PV++ P + + LY+ +N + +L +ED
Sbjct: 606 PVLSKPEADEKLYLYVFVSNHAVSGVLVRED 636
Score = 55.5 bits (132), Expect = 3e-07
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 21/144 (14%)
Query: 419 EDERAIFQRPTEQMKSHLKPLFVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEAD 478
E+E +RP H L + V ++++LVD G++++L+
Sbjct: 189 EEETRHIERP------HDDALIITLDVANFKISRILVDTGSSVDLI-------------- 228
Query: 479 LIPHDMVLSDYEGKTGSSLGAIMLNITVGTVARSTLFIVVPSKANYNLLLGREWIHGVGA 538
+ L + ++ SLG I L + G +++ F+V A YN++LG WI + A
Sbjct: 229 FLGPPSPLVAFTSESAMSLGTIKLPVLAGKMSKIVDFVVFDKPATYNIILGTPWIFQMKA 288
Query: 539 VPSTLHQRISIWKADGFVENVQAD 562
VPST HQ + ++G VE + D
Sbjct: 289 VPSTYHQWLKFPTSNG-VETIWGD 311
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 223 bits (569), Expect = 6e-58
Identities = 145/440 (32%), Positives = 235/440 (52%), Gaps = 29/440 (6%)
Query: 800 PQSRIGGIELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVV 859
P SR + ++ P+ + P R P + ++K+++E LL A V+
Sbjct: 461 PPSRSDPFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLG-------------APVL 507
Query: 860 PVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA 919
V KK+G R+CID+R LN T K++Y +P + ++D G S +D SGY+ I IA
Sbjct: 508 FVKKKDGSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIA 567
Query: 920 EEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVK 979
E DV KTAFR G +E+VVMPFGL NA A + R+MN++F + ++ F+ ++IDDI+V
Sbjct: 568 EADVRKTAFRT--RYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVY 625
Query: 980 SPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAIL 1039
S S ++ +HLR+ E++R+ L KC+F FLG +V +G+ ++ K +AI
Sbjct: 626 SKSLEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIR 685
Query: 1040 DTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDT-FRWEAEHQKAFDE 1098
D + PT+ +++S LG + RRF+ + + P+ +L +D F W E ++ F
Sbjct: 686 DWHTPTNATEIRSFLGLAGYYRRFVKGFASMAQ---PMTKLTGKDVPFVWSPECEEGFVS 742
Query: 1099 LKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETR 1158
LK L+S PV+A P G+P +Y A+ +G +L Q + + I Y SR L E
Sbjct: 743 LKEMLTSTPVLALPEHGEPYMVYTDASGVGLGCVLMQ-----RGKVIAYASRQLRKHEGN 797
Query: 1159 YTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYS 1218
Y + + F+ + Y+ +V VF+ + +K++ ++P L+ R +W + +Y
Sbjct: 798 YPTHDLEMAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQRQWMELVADYD 857
Query: 1219 L--TYAPLKAVKGQAVADFL 1236
L Y P KA VAD L
Sbjct: 858 LEIAYHPGKA---NVVADAL 874
Score = 45.8 bits (107), Expect = 2e-04
Identities = 38/157 (24%), Positives = 66/157 (41%), Gaps = 4/157 (2%)
Query: 1503 KDCMEYAKGCQDCQRHAGIQHVPASELHSI-IKPWPFRGWALDLIGEINPCSSRQHKYII 1561
+D + C CQ VP L S+ I W + +D + + SR I
Sbjct: 941 EDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFV--VGLPVSRTKDAIW 998
Query: 1562 VAIDYFTKWVEAIPLQNVTQDTVI-DFIQNHIVYRFGLPESLTTDQGTVFVGQKVASFTE 1620
V +D TK + ++ V+ + IV G+P S+ +D+ + F +F
Sbjct: 999 VIVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVPVSIVSDRDSKFTSAFWRAFQA 1058
Query: 1621 SWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILVE 1657
G K+ ST Y+ Q GQ E +TL +++ +++
Sbjct: 1059 EMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLD 1095
>At1g37200 hypothetical protein
Length = 1564
Score = 220 bits (561), Expect = 5e-57
Identities = 113/254 (44%), Positives = 161/254 (62%), Gaps = 13/254 (5%)
Query: 798 AWPQSRIGGIELPIKEDK-------KPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTAR 850
AW + + GI L + + +P+KQ R+ P+ +++E++RLL+ IR +
Sbjct: 659 AWSSANLQGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVK 718
Query: 851 YVDWLANVVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGY 910
Y DWLAN V V KNGK RVCIDF DLN A PKD + +P + +V + AGHE LS +D +
Sbjct: 719 YPDWLANPVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAF 778
Query: 911 SGYNQIFIAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQ 970
SGYNQI + +D KTAF T + VMPFGLKN GATYQR++N +F D + M+
Sbjct: 779 SGYNQILMRPDDQEKTAFI------TDCYKVMPFGLKNTGATYQRLVNRMFADQLGKTME 832
Query: 971 VYIDDIVVKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEI 1030
+YIDD++VKS D L LR+ F+ + K+ +K+NP KC+FGV +G+FLG++V ++GIE
Sbjct: 833 LYIDDMLVKSAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEA 892
Query: 1031 NKNKAKAILDTNPP 1044
N + A +D P
Sbjct: 893 NPKQIAAFIDMPSP 906
Score = 139 bits (350), Expect = 1e-32
Identities = 88/268 (32%), Positives = 144/268 (52%), Gaps = 6/268 (2%)
Query: 1138 ENSKERAIFYLSRVLNDAETRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHM 1197
++ ++ I+Y+S+ L DAET Y +EKL L + S KL+ Y++ ++V + I + +
Sbjct: 927 DHEGQKPIYYVSKTLIDAETHYRAMEKLALAVVMSARKLRQYLQSHPIVVMTSQPI-RTI 985
Query: 1198 LSKPILHSRIGKWALALTEYSLTYAPLKAVKGQAVADFLVDHTLPKEIVTYVGVQPWKLF 1257
L SR+ KWA+ L+EY + Y + K Q +ADF+++ L T + W L
Sbjct: 986 LHSTTQSSRLAKWAIELSEYDIEYRTRTSFKAQVLADFVIELPLADLDGTNSN-KKWLLH 1044
Query: 1258 FDGSSHKNGTGIGMFIVSPGGTPTKFKFRIKKKCSNNEAEYEALISSLEILIALGARNVV 1317
DGSS++ G+G G+ + SP G + FR+ SNNE+EYEALI +++ + R++
Sbjct: 1045 VDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNESEYEALIDGIKLAQGMRIRDIH 1104
Query: 1318 VKGDSELVIKQLTKEYKCISENLAKYYTKANNLLAKFDDARLGHVSRIDNQEANELAQIA 1377
DS+LV Q EY+ E + Y L +F+ L + R +N + LA +A
Sbjct: 1105 AHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFESFELTRIPRGENTSTDALAALA 1164
Query: 1378 SGYMVDKYRLKELIEVKEKLNPS-DLNV 1404
S +D + +K +I V+ +PS DL V
Sbjct: 1165 S--TLDPF-VKRIIPVEGIEHPSIDLTV 1189
Score = 132 bits (333), Expect = 1e-30
Identities = 69/213 (32%), Positives = 109/213 (50%), Gaps = 15/213 (7%)
Query: 1414 DWRKPIVDYLQNPVGTTD----RKTKYRAMSYVIMGNELFKKNVDGTLLKCLSDDDALIA 1469
DWR PI+DY++ + D RK K ++ Y IM L K++V G + C
Sbjct: 1247 DWRIPIIDYIERGITPPDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDL 1306
Query: 1470 ISAVHDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASEL 1529
+ ++H+G CG+H +G ++ I+ + DC+ ++ C CQRHA H P E+
Sbjct: 1307 MKSMHEGQCGSHYSGRTLRCIM----------LADCIAHSLRCDKCQRHAPTLHQPPEEM 1356
Query: 1530 HSIIKPWPFRGWALDLIGEINPCSSRQH-KYIIVAIDYFTKWVEAIPLQNVTQDTVIDFI 1588
SI P+PF W++D++ + ++ K ++V DY TKW+E Q VT+ V F+
Sbjct: 1357 SSISSPYPFMKWSMDVVRPMEASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFL 1416
Query: 1589 QNHIVYRFGLPESLTTDQGTVFVGQKVASFTES 1621
+IVYR G+P + TD G +K F S
Sbjct: 1417 LENIVYRHGIPYEIVTDNGLTSPREKSKHFATS 1449
Score = 43.9 bits (102), Expect = 8e-04
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 499 AIMLNITVGTVARSTLFIVVPS---KANYNLLLGREWIHGVGAVPSTLHQRI 547
AI++ I VG S + I S KA +N +LGR W+H + AVPST HQ I
Sbjct: 504 AIVIRIDVGNYKLSRIMIDTGSSVDKAPFNAILGRPWLHAMKAVPSTYHQCI 555
>At3g11970 hypothetical protein
Length = 1499
Score = 216 bits (550), Expect = 9e-56
Identities = 143/431 (33%), Positives = 227/431 (52%), Gaps = 16/431 (3%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGK 867
++ + E PV Q P R+ +I + +E LL ++ A + + VV V KK+G
Sbjct: 592 KIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQ-ASSSPYASPVVLVKKKDGT 650
Query: 868 MRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTA 927
R+C+D+R+LN T KD + +P+ E ++D G S +D +GY+Q+ + +D+ KTA
Sbjct: 651 WRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTA 710
Query: 928 FRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQL 987
F+ G +E++VMPFGL NA AT+Q +MN IF F+ F+ V+ DDI+V S S ++
Sbjct: 711 FKTHS--GHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHR 768
Query: 988 LHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSK 1047
HL++ FE MR L KCAF V ++LG + +GIE + K KA+ + PT+
Sbjct: 769 QHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTL 828
Query: 1048 KQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPP 1107
KQL+ LG + RRF+ + PL L K D F W A Q+AF++LKA L P
Sbjct: 829 KQLRGFLGLAGYYRRFVRSFGVIA---GPLHALTKTDAFEWTAVAQQAFEDLKAALCQAP 885
Query: 1108 VMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCL 1167
V++ P+ K + A IG++L QE + Y+SR L + ++ EK L
Sbjct: 886 VLSLPLFDKQFVVETDACGQGIGAVLMQEG-----HPLAYISRQLKGKQLHLSIYEKELL 940
Query: 1168 CLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTE--YSLTYAPLK 1225
+ F+ K ++Y+ ++ + +K++L + + +W L E Y + Y +
Sbjct: 941 AVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQY---R 997
Query: 1226 AVKGQAVADFL 1236
K VAD L
Sbjct: 998 QGKENVVADAL 1008
Score = 49.7 bits (117), Expect = 1e-05
Identities = 42/162 (25%), Positives = 76/162 (45%), Gaps = 12/162 (7%)
Query: 1497 YWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRG--W---ALDLIGEINP 1551
YW ++KD Y + C CQ+ + PA+ +++P P W ++D I E P
Sbjct: 1111 YWKGMIKDIQAYIRSCGTCQQ---CKSDPAAS-PGLLQPLPIPDTIWSEVSMDFI-EGLP 1165
Query: 1552 CSSRQHKYIIVAIDYFTKWVEAIPLQN-VTQDTVIDFIQNHIVYRFGLPESLTTDQGTVF 1610
S + I+V +D +K I L + + TV +++ G P S+ +D+ VF
Sbjct: 1166 VSGGK-TVIMVVVDRLSKAAHFIALSHPYSALTVAHAYLDNVFKLHGCPTSIVSDRDVVF 1224
Query: 1611 VGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIK 1652
+ F G+ L ++ Y+ Q++GQ E N+ L + ++
Sbjct: 1225 TSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLR 1266
>At1g36590 hypothetical protein
Length = 1499
Score = 216 bits (550), Expect = 9e-56
Identities = 143/431 (33%), Positives = 227/431 (52%), Gaps = 16/431 (3%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVVPVIKKNGK 867
++ + E PV Q P R+ +I + +E LL ++ A + + VV V KK+G
Sbjct: 592 KIKLLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQ-ASSSPYASPVVLVKKKDGT 650
Query: 868 MRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVSKTA 927
R+C+D+R+LN T KD + +P+ E ++D G S +D +GY+Q+ + +D+ KTA
Sbjct: 651 WRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTA 710
Query: 928 FRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRDDQL 987
F+ G +E++VMPFGL NA AT+Q +MN IF F+ F+ V+ DDI+V S S ++
Sbjct: 711 FKTHS--GHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHR 768
Query: 988 LHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPPTSK 1047
HL++ FE MR L KCAF V ++LG + +GIE + K KA+ + PT+
Sbjct: 769 QHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTL 828
Query: 1048 KQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLSSPP 1107
KQL+ LG + RRF+ + PL L K D F W A Q+AF++LKA L P
Sbjct: 829 KQLRGFLGLAGYYRRFVRSFGVIA---GPLHALTKTDAFEWTAVAQQAFEDLKAALCQAP 885
Query: 1108 VMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEKLCL 1167
V++ P+ K + A IG++L QE + Y+SR L + ++ EK L
Sbjct: 886 VLSLPLFDKQFVVETDACGQGIGAVLMQEG-----HPLAYISRQLKGKQLHLSIYEKELL 940
Query: 1168 CLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTE--YSLTYAPLK 1225
+ F+ K ++Y+ ++ + +K++L + + +W L E Y + Y +
Sbjct: 941 AVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRLNTPIQQQWLPKLLEFDYEIQY---R 997
Query: 1226 AVKGQAVADFL 1236
K VAD L
Sbjct: 998 QGKENVVADAL 1008
Score = 48.1 bits (113), Expect = 4e-05
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 1474 HDGLCGAHQAGIKMKWILFRQGMYWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSII 1533
H G HQ ++K + + +GM +KD Y + C CQ+ + PA+ ++
Sbjct: 1096 HSGRDVTHQ---RVKGLFYSKGM-----IKDIQAYIRSCGTCQQ---CKSDPAAS-PGLL 1143
Query: 1534 KPWPFRG--W---ALDLIGEINPCSSRQHKYIIVAIDYFTKWVEAIPLQN-VTQDTVIDF 1587
+P P W ++D I E P S + I+V +D +K I L + + TV
Sbjct: 1144 QPLPIPDTIWSEVSMDFI-EGLPVSGGK-TVIMVVVDRLSKAAHFIALSHPYSALTVAQA 1201
Query: 1588 IQNHIVYRFGLPESLTTDQGTVFVGQKVASFTESWGIKLLTSTPYYAQANGQVEAANKTL 1647
+++ G P S+ +D+ VF + F G+ L ++ Y+ Q++GQ E N+ L
Sbjct: 1202 YLDNVFKLHGCPTSIVSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCL 1261
Query: 1648 ISLIK 1652
+ ++
Sbjct: 1262 ETYLR 1266
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 214 bits (545), Expect = 3e-55
Identities = 130/361 (36%), Positives = 202/361 (55%), Gaps = 12/361 (3%)
Query: 800 PQSRIGGIELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVDWLANVV 859
P R + ++ P+ + P R P + ++K+++E LL FIR + W A V+
Sbjct: 137 PPDRSDPFTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSS-PWGAPVL 195
Query: 860 PVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIA 919
V KK+G R+CID+R LN T K++Y +P + ++D G ++ S +D SGY+QI I
Sbjct: 196 FVKKKDGSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIE 255
Query: 920 EEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVK 979
DV KTAFR G +E+VVMPFGL NA A + ++MN +F DF++ F+ ++IDDI+V
Sbjct: 256 PTDVRKTAFRT--RYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVH 313
Query: 980 SPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAIL 1039
S S + HLR ER+R++ L K +F + FLG V+ +G+ ++ K ++I
Sbjct: 314 SKSWEAHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIK 373
Query: 1040 DTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDT-FRWEAEHQKAFDE 1098
+ P + +++S LG + RRF+++ + + PL RL +DT F W E +K+F E
Sbjct: 374 EWPRPRNATEIRSFLGLAGYYRRFVMSFASMAQ---PLTRLTGKDTAFNWSDECEKSFLE 430
Query: 1099 LKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETR 1158
LKA L + PV+ P G+P +Y A+ +G +L Q K I Y SR L E
Sbjct: 431 LKAMLINAPVLVLPEEGEPYTVYTDASIVGLGCVLMQ-----KGSVIAYASRQLRKHEKN 485
Query: 1159 Y 1159
Y
Sbjct: 486 Y 486
Score = 58.9 bits (141), Expect = 2e-08
Identities = 59/281 (20%), Positives = 119/281 (41%), Gaps = 18/281 (6%)
Query: 1385 YRLKELIEVKEKLNPSDLNVLVIDNMAPKDWRKPIVDYLQNPVGTTDRKTKYRAMSYVIM 1444
Y ++L + ++ DL + + A K WR ++ Q D + K + +
Sbjct: 474 YASRQLRKHEKNYPTHDLEMAAVV-FALKIWRSYLIRLAQE----RDEEIK----GWTLN 524
Query: 1445 GNELFKKNVDGTLLK----CLSDDDALIA--ISAVHDGLCGAHQAGIKMKWILFRQGMYW 1498
++ + +GT++ C+ +D AL + H H KM L R +W
Sbjct: 525 NKTEYQTSNNGTIVVNGRVCVPNDRALKEEILREAHQSKFSIHPGSNKMYRDLKRY-YHW 583
Query: 1499 PTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSI-IKPWPFRGWALDLIGEINPCSSRQH 1557
+ KD + C CQ VP+ L ++ I W + +D + + +H
Sbjct: 584 VGMRKDVARWVAKCPTCQLVKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKH 643
Query: 1558 KYIIVAIDYFTKWVEAIPLQNVTQDTVI-DFIQNHIVYRFGLPESLTTDQGTVFVGQKVA 1616
+ V +D TK + + + +I + + I+ G+P S+ +D+ T F +
Sbjct: 644 NAVWVVVDRLTKSAHFMAISDKDGAEIIAEKYIDEIMRLHGIPVSIVSDRDTRFTSKFWN 703
Query: 1617 SFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIKNILVE 1657
+F ++ G ++ ST Y+ Q +GQ E +TL +++ +++
Sbjct: 704 AFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLD 744
>At1g35370 hypothetical protein
Length = 1447
Score = 196 bits (499), Expect = 7e-50
Identities = 137/434 (31%), Positives = 222/434 (50%), Gaps = 30/434 (6%)
Query: 808 ELPIKEDKKPVKQLPRRFHPDVLVKIKEEIERLLRCKFIRTARYVD---WLANVVPVIKK 864
++ + E PV Q P R+ +V K+EI+++++ V + + VV V KK
Sbjct: 571 KIKLLEGANPVNQRPYRY----VVHQKDEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKK 626
Query: 865 NGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEEDVS 924
+G R+C+D+ +LN T KD + +P+ E ++D G S +D +GY+Q+ + +D+
Sbjct: 627 DGTWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQ 686
Query: 925 KTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRD 984
KTAF+ G +E++VM FGL NA AT+Q +MN++F DF+ F+ V+ DDI++ S S +
Sbjct: 687 KTAFKTHN--GHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIE 744
Query: 985 DQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPP 1044
+ HLR FE MR + L F + + LG + + IE + K +A+ + P
Sbjct: 745 EHKEHLRLVFEVMRLHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTP 796
Query: 1045 TSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDTFRWEAEHQKAFDELKAYLS 1104
T+ KQ++ LG + RRF+ N PL L K D F W E Q AFD LKA L
Sbjct: 797 TTVKQVRGFLGFAGYYRRFVRNFGVIA---GPLHALTKTDGFCWSLEAQSAFDTLKAVLC 853
Query: 1105 SPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIEK 1164
+ PV+A P+ K + A I ++L Q K + Y+SR L + ++ EK
Sbjct: 854 NAPVLALPVFDKQFMVETDACGQGIRAVLMQ-----KGHPLAYISRQLKGKQLHLSIYEK 908
Query: 1165 LCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTE--YSLTYA 1222
L F+ K ++Y+ P ++ + +K++L + + +W L E Y + Y
Sbjct: 909 ELLAFIFAVRKWRHYLLPSHFIIKTDQRSLKYLLEQRLNTPVQQQWLPKLLEFDYEIQY- 967
Query: 1223 PLKAVKGQAVADFL 1236
+ K VAD L
Sbjct: 968 --RQGKENLVADAL 979
Score = 50.4 bits (119), Expect = 8e-06
Identities = 37/160 (23%), Positives = 72/160 (44%), Gaps = 8/160 (5%)
Query: 1497 YWPTIMKDCMEYAKGCQDCQRHAGIQHVPASELHSIIKPWPFRGW---ALDLIGEINPCS 1553
YW ++KD + + C CQ+ L + P P + W ++D I + +
Sbjct: 1082 YWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPDKIWCDVSMDFIEGLP--N 1137
Query: 1554 SRQHKYIIVAIDYFTKWVEAIPLQN-VTQDTVIDFIQNHIVYRFGLPESLTTDQGTVFVG 1612
S I+V +D +K + L + + TV +++ G P S+ +D+ +F
Sbjct: 1138 SGGKSVIMVVVDRLSKAAHFVALAHPYSALTVAQAFLDNVYKHHGCPTSIVSDRDVLFTS 1197
Query: 1613 QKVASFTESWGIKLLTSTPYYAQANGQVEAANKTLISLIK 1652
F + G++L S+ Y+ Q++GQ E N+ L + ++
Sbjct: 1198 DFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLR 1237
>At2g06890 putative retroelement integrase
Length = 1215
Score = 179 bits (455), Expect = 9e-45
Identities = 124/378 (32%), Positives = 193/378 (50%), Gaps = 18/378 (4%)
Query: 863 KKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIFIAEED 922
+K+G R+C D R +N T K + +P + M+D G S +D SGY+QI + E D
Sbjct: 464 QKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGD 523
Query: 923 VSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPS 982
KTAF+ G YEW+VMPFGL +A +T+ R+MN + FI F+ VY DDI+V S S
Sbjct: 524 EWKTAFKTKH--GLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSES 581
Query: 983 RDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTN 1042
+ + HL +RK L N KC F FLGFVV G+++++ K KAI D
Sbjct: 582 LREHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWP 641
Query: 1043 PPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDT-FRWEAEHQKAFDELKA 1101
P + +++S G F RRF + S +PL + K+D F+WE ++AF LK
Sbjct: 642 SPKTVGEVRSFHGLAGFYRRFFKDFS---TIVAPLTEVMKKDVGFKWEKAQEEAFQSLKD 698
Query: 1102 YLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTM 1161
L++ PV+ K ++ A+ IG++L Q+ ++ I + S L A Y
Sbjct: 699 KLTNAPVLILSEFLKTFEIECDASGIGIGAVLMQD-----QKLIAFFSEKLGGATLNYPT 753
Query: 1162 IEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTY 1221
+K L + + ++Y+ P ++ + ++ +KH+ + L+ R +W E+ T+
Sbjct: 754 YDKELYALVRALQRWQHYLWPKVFVIHTDHESLKHLKGQQKLNKRHARW----VEFIETF 809
Query: 1222 A---PLKAVKGQAVADFL 1236
A K K VAD L
Sbjct: 810 AYVIKYKKGKDNVVADAL 827
Score = 33.1 bits (74), Expect = 1.4
Identities = 36/153 (23%), Positives = 68/153 (43%), Gaps = 20/153 (13%)
Query: 386 RILEVTENEEDYYDEEVPDDNPLCYYVMQKGSVEDERAIFQRP------TEQMKSHLKPL 439
R++ + +N E +EE+PD +P ++ + E + +R T++ +
Sbjct: 176 RVMILLDNGEIEPEEEIPD-SPSSLKENEELPAQGELLVARRTLSVQTKTDEQEQRKNLF 234
Query: 440 FVWAKVDEKGVNKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTGSSLGA 499
V K V +++DGG+ N+ + M+KKLG + + GK
Sbjct: 235 HTRCHVHGK-VCSLIIDGGSCTNVASETMVKKLG----------LKWLNDSGKMRVK-NQ 282
Query: 500 IMLNITVGTVARSTLFIVVPSKANYNLLLGREW 532
+++ I +G L V+P +A + +LLGR W
Sbjct: 283 VVVPIVIGKYEDEILCDVLPMEAGH-ILLGRPW 314
>At4g07600
Length = 630
Score = 177 bits (450), Expect = 3e-44
Identities = 114/308 (37%), Positives = 163/308 (52%), Gaps = 26/308 (8%)
Query: 858 VVPVIKKNGKMRVCIDFRDLNAATPKDEYHMPIAEMMVDSAAGHEYLSLLDGYSGYNQIF 917
++P+ G +R+CID+R+LNAA+ D + +P + M++ A H Y LDGYSG+ QI
Sbjct: 346 LIPIRTITG-LRMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIP 404
Query: 918 IAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIV 977
I D KT F CP GT+ + MPFGL NA AT+QR M +IF D IE ++V++DD
Sbjct: 405 IHPNDHEKTTFTCP--YGTFAYERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFS 462
Query: 978 VKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 1037
V PS LL+L + R + L +N KC F V G LG + +KGIE++K
Sbjct: 463 VYGPSFSSCLLNLGRVLTRCEETNLVLNWEKCHFMVKEGIMLGHKISEKGIEVDKG---- 518
Query: 1038 ILDTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLK-KEDTFRWEAEHQKAF 1096
LG F RRFI + S K PL RL KE F ++ + K+F
Sbjct: 519 --------------CFLGHAGFYRRFIKDFS---KIARPLTRLLCKETEFEFDEDCPKSF 561
Query: 1097 DELKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAE 1156
+K L S PV+ P ++ A + +G++L Q+ + K I+Y SR L++A+
Sbjct: 562 HTIKEALVSAPVVRATNWDYPFEIMCDALDYAVGAVLGQKID-KKLHVIYYASRTLDEAQ 620
Query: 1157 TRYTMIEK 1164
RY EK
Sbjct: 621 GRYATTEK 628
Score = 31.6 bits (70), Expect = 4.0
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 451 NKVLVDGGATINLMPKFMLKKLGKTEADLIPHDMVLSDYEGKTGSSLGAIMLNITVGTVA 510
N+ L D GA ++ MP + K+LG T+ ++L+D + L L I +G
Sbjct: 81 NRCLCDLGALVSPMPLSIAKRLGFTQYKSCNISLILADRSVRISHGL-LKNLPIRIGAAE 139
Query: 511 RSTLFIV--VPSKANYNLLLGREWIHGVGAVPSTLHQRISIWKADGFVENVQADQSYYLA 568
ST F++ + + L+L R ++ GA+ +I + N+ D
Sbjct: 140 ISTDFVILEMDEEPKDPLILRRPFLATAGAMIDVKKGKIDL--------NLGKDFRMTFD 191
Query: 569 ETGYVSKKNFDKSLATIAPLDTVASQ 594
+ K N + L I +D +A +
Sbjct: 192 IKDAMKKPNIEGQLFWIEEMDQLADE 217
>At2g10690 putative retroelement pol polyprotein
Length = 622
Score = 174 bits (442), Expect = 3e-43
Identities = 117/331 (35%), Positives = 175/331 (52%), Gaps = 22/331 (6%)
Query: 925 KTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIVVKSPSRD 984
KT F CP GT+ + M FGL NA T+QR M +IF DFIE M+V++DD S
Sbjct: 165 KTTFTCPN--GTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDDFSGFSSC-- 220
Query: 985 DQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKAILDTNPP 1044
LL+L + ER + L +N KC F V G LG + KGIE++K K ++ PP
Sbjct: 221 --LLNLCRVLERCEETNLVLNWEKCHFMVHEGIVLGHKISGKGIEVDKAKIDVMIQLQPP 278
Query: 1045 TSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLK-KEDTFRWEAEHQKAFDELKAYL 1103
+ K ++S LG F RRFI + S K PL RL KE F ++ + KAF +K L
Sbjct: 279 KTVKDIRSFLGHAEFYRRFIKDFS---KIARPLTRLLCKETEFNFDEDCLKAFHLIKETL 335
Query: 1104 SSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAETRYTMIE 1163
S P+ P P ++ A + +G++L Q+ ++ K I+Y SR +++A+TRY IE
Sbjct: 336 VSAPIFQAPNWDHPFEIMCDAFDYAVGAVLDQKIDD-KLHVIYYASRTMDEAQTRYATIE 394
Query: 1164 KLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTEYSLTYAP 1223
K L + F+ K++ Y+ V V+ + ++H+ +K SR+ +W L L E+ +
Sbjct: 395 KELLAVVFAFEKIRSYLVGFKVKVYIDHAALRHIYAKKETKSRLLRWILLLQEFDMEIID 454
Query: 1224 LKAVKGQAVADFL----------VDHTLPKE 1244
K V+ VAD L +D T+P+E
Sbjct: 455 KKGVE-NGVADHLSRMRIEDSVPIDDTMPEE 484
>At4g03650 putative reverse transcriptase
Length = 839
Score = 169 bits (429), Expect = 9e-42
Identities = 106/316 (33%), Positives = 170/316 (53%), Gaps = 11/316 (3%)
Query: 918 IAEEDVSKTAFRCPGALGTYEWVVMPFGLKNAGATYQRVMNTIFHDFIETFMQVYIDDIV 977
+AE DV KTAFR G +E+VVMPFGL NA A + R+MN++F +F++ F+ ++IDDI+
Sbjct: 516 LAEADVRKTAFRT--RYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDIL 573
Query: 978 VKSPSRDDQLLHLRKSFERMRKYGLKMNPLKCAFGVIAGDFLGFVVHKKGIEINKNKAKA 1037
V S S ++ +HLR+ E++R+ L KC+F FLG +V +G+ ++ K +A
Sbjct: 574 VYSKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEA 633
Query: 1038 ILDTNPPTSKKQLQSLLGKINFLRRFIVNLSEKTKSFSPLLRLKKEDT-FRWEAEHQKAF 1096
I D PT+ +++S LG + RRFI + + P+ +L +D F W E ++ F
Sbjct: 634 IRDWPRPTNATEIRSFLGLAGYYRRFIKGFASMAQ---PMTKLTGKDVPFVWSPECEEGF 690
Query: 1097 DELKAYLSSPPVMAPPIGGKPMKLYISATNGTIGSMLAQEDENSKERAIFYLSRVLNDAE 1156
LK L+S PV+A P G+P +Y A+ +G L Q + + I Y SR L E
Sbjct: 691 VSLKEMLTSTPVLALPEHGEPYMVYTDASGVGLGCALMQ-----RGKVIAYASRQLRKHE 745
Query: 1157 TRYTMIEKLCLCLYFSCVKLKYYIKPIDVMVFSHYDIIKHMLSKPILHSRIGKWALALTE 1216
Y + + F+ + Y+ V VF+ + +K++ ++P L+ R +W + +
Sbjct: 746 GNYPTHDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQRRWMELVAD 805
Query: 1217 YSLTYAPLKAVKGQAV 1232
Y L A A G V
Sbjct: 806 YDLEIAYHLAEMGTKV 821
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.140 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,832,504
Number of Sequences: 26719
Number of extensions: 1769606
Number of successful extensions: 6956
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 6443
Number of HSP's gapped (non-prelim): 339
length of query: 1666
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1553
effective length of database: 8,299,349
effective search space: 12888888997
effective search space used: 12888888997
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0240.1