BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0239.1
         (285 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g23910 putative protein                                             32  0.51
At1g10450 unknown protein                                              29  3.3
At4g03460 hypothetical protein                                         28  4.3

>At4g23910 putative protein
          Length = 198

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 32/116 (27%), Positives = 49/116 (41%), Gaps = 13/116 (11%)

Query: 120 QRKLRLTGLTEGLSPETQRKV---VPSSFRGKEFNG--LSVSPKSRRFAQKVQPMVEVHS 174
           +R+ R  G+   ++    RK     P  FRG+ FNG  ++ + +SR  A  VQ +     
Sbjct: 80  KRRSRFQGIQFPVTTNIARKASTAAPLDFRGRAFNGGRMTSANQSRLIAPPVQNISVQAR 139

Query: 175 VFPLVVGVDRK--------KLPKAAAAAVGGDETTIRNMGFVVDVARVPTVLTCER 222
           V      VD+K        K   +  A++     TI N G  V V R+P  +   R
Sbjct: 140 VNAKRHEVDQKVEHRGGKRKTLDSRFASMKEQRMTINNYGVTVQVPRLPPWVRARR 195


>At1g10450 unknown protein
          Length = 1173

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 88  YARFLLSFGFVAKRLRYSYRKSSFRNLSAKCRQRKLRLTGLTEGLSPETQRKVVPSSFRG 147
           + RFL+ FGF    L+ S+  SS RN SA    R+L++    E +  +TQ++    S RG
Sbjct: 20  FPRFLVWFGF----LKASFFCSS-RNQSAGESGRRLKMKRAREDVHTDTQKRKPEVSSRG 74

Query: 148 K 148
           +
Sbjct: 75  E 75


>At4g03460 hypothetical protein
          Length = 637

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 188 PKAAAAAVGGDETTIRNMGFVVDVA 212
           PK  AA   GDET +R+M F V++A
Sbjct: 99  PKTIAAVRAGDETYLRDMKFDVNIA 123


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,282,015
Number of Sequences: 26719
Number of extensions: 259257
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 3
length of query: 285
length of database: 11,318,596
effective HSP length: 98
effective length of query: 187
effective length of database: 8,700,134
effective search space: 1626925058
effective search space used: 1626925058
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)