BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0237.14
         (1754 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g23110 putative protein                                           1921  0.0
At5g19400 putative protein                                             33  1.1
At3g27180 hypothetical protein                                         32  4.3
At1g21645 putative SecA-type chloroplast protein transport factor      31  7.3
At1g19360 unknown protein                                              31  7.3
At2g17910 putative non-LTR retroelement reverse transcriptase          30  9.5

>At5g23110 putative protein
          Length = 4706

 Score = 1921 bits (4977), Expect = 0.0
 Identities = 973/1810 (53%), Positives = 1276/1810 (69%), Gaps = 101/1810 (5%)

Query: 1    LYDPRVPELKKMLHGDVFFPSDKFLDPEILDTLVCLGLRTTLGFTGLLDCARSVSLLHDS 60
            LYDPRVP L+++LH +V+FPS+KF D +ILD LV LGLRTTL  +  LD ARSVS+LHD 
Sbjct: 2342 LYDPRVPALQELLHKEVYFPSEKFSDSKILDALVGLGLRTTLDCSTYLDAARSVSMLHDL 2401

Query: 61   GDTEASKHGKGLLVFLDKLACKLSSNGESENDDQSLAVRSNITMDDAVVYDGFPKDENSL 120
            GD EAS++G+ LL  +  L+ KLSS     N D+S  + S IT +D+   + +P+ E   
Sbjct: 2402 GDLEASRYGRRLLFHIKTLSIKLSSKTGEANHDESQNIMS-ITSEDSFDGETYPEYETET 2460

Query: 121  IDDVDLFMSSLINDMVEEEFWSELKLITWCPVILDPAVRGLPWLKSSKQVALPTVVRPKS 180
                  ++ SL+    E+EFW +L+ I WCP+ LDP + G+PWL+SS  VA P  VRPKS
Sbjct: 2461 S-----YLGSLLTQQSEDEFWCQLRSIPWCPICLDPPIEGIPWLESSNLVASPDRVRPKS 2515

Query: 181  QMWLVSSSMLILDGECGTTYLQTKLGWMDCPNIGVLSRQLIELSKSYQQLKTHSLLDPDF 240
            QM+LVS++M +LDGEC ++YL  KLGWMDC  I +L RQLIE+SKSY++ K+ S ++P+F
Sbjct: 2516 QMFLVSATMHLLDGECQSSYLHQKLGWMDCLTIDILCRQLIEISKSYKEQKSRSSVNPEF 2575

Query: 241  DVKLQKEIPCLYSKLQEYINTDDFNDLKARLDGVSWVWIGDDFVSPNALAFDSPVKFTPY 300
            +  LQ +IP LY++LQE    +DF  LK+ L GV WVW+GDDFVS + L+FDSPVKFTPY
Sbjct: 2576 ESMLQSQIPLLYTRLQELSRENDFLALKSALSGVPWVWLGDDFVSADVLSFDSPVKFTPY 2635

Query: 301  LYVVSSELSEYKDLMIKLGVRLSFGILDYLHVLQRLQNDLNGVPLSTDQLNFVRCVHEAI 360
            LYVV SELS++K+L+++LGVRLSF   DY++ LQ LQND+ G  L+ +Q+NFV CV EA+
Sbjct: 2636 LYVVPSELSDFKELLLELGVRLSFDAADYMNTLQHLQNDIKGSQLTDEQINFVLCVLEAV 2695

Query: 361  AECCLEKPLFEPFDSPLWIPDTFGVLMHAGDLVYNDAPWLENSSLIGRHFVHPSISNDLA 420
            A+C  E       +S L +PD+ G L+   DLVYNDAPW+++SSL G+ FVHPSI++D+A
Sbjct: 2696 ADCFSEVSSDSDNNSVL-VPDSAGFLVPLEDLVYNDAPWVDSSSLSGKRFVHPSINSDMA 2754

Query: 421  ERLGVQSVRCLSLVSEDMTKDLPCMGYNKVSELLALYGNSEFLLFDLLELADCCKAKKLH 480
             RLG+QS+RC+SLV  D+T+DLPCM + K+ ELL+LY + +FLLFDLLELADCCK KKLH
Sbjct: 2755 NRLGIQSLRCISLVDNDITQDLPCMDFTKLKELLSLYASKDFLLFDLLELADCCKVKKLH 2814

Query: 481  LIYDKREHPRQSLLQHNLGEFQGPALVAIFEGACLSREEFSNFQLLPPWKLRGNTLNYGL 540
            +I+DKREHPR++LLQHNLGEFQGPA+VAI EG  L+REE  + QLL  W+++G TLNYGL
Sbjct: 2815 IIFDKREHPRKTLLQHNLGEFQGPAIVAILEGVTLTREEICSLQLLSQWRIKGETLNYGL 2874

Query: 541  GLVGCYSICDLLSVVSGGYFYMFDPRGLVLSAPSSNAPSGKMFSLIGTDLAQRFGDQFSP 600
            GL+ CY +CDLLS+VSGGYFYMFDP+G  LSA ++ AP+GKMFSLIGT+L +RF DQF+P
Sbjct: 2875 GLLSCYFMCDLLSIVSGGYFYMFDPQGATLSASTTQAPAGKMFSLIGTNLVERFSDQFNP 2934

Query: 601  MLIDQNDLWSLSDSTIIRMPLSSDCLKVGHDVASNRIKHITDVFMEHGSRTLLFLKSVLQ 660
            MLI Q+  WSL+DSTIIRMPLS++ LK G +   +R+K I+D F+E+ SR L+FLKSV Q
Sbjct: 2935 MLIGQDKAWSLTDSTIIRMPLSTEILKDGFEAGLDRVKQISDQFLENASRILIFLKSVSQ 2994

Query: 661  VSISTWEEGHSHPCQNFSISIDPSSSIMRNPFSEKKWRKFQLSRLFSSSNTAIKMHVIDV 720
            VS STWE+G++ P Q++++ ID +S+IMRNPF+EK  +  +LSR+F SSN+ +K  +I+V
Sbjct: 2995 VSFSTWEQGNAQPHQDYTLHIDSASAIMRNPFAEKNLKTSKLSRIFGSSNSGVKSRIIEV 3054

Query: 721  SLYSEGTTFIDRWLLALSLGSGQTRNMALDRRYLAYNLTPVAGIAALISRNGHHADVYST 780
            +L+      +DRWL+ LS GSGQ++NMA  R+YLAYNLTPVAG+AA +SRNG   DV++ 
Sbjct: 3055 NLHIGENKLLDRWLVVLSKGSGQSQNMARGRKYLAYNLTPVAGVAAHVSRNGRPVDVHAA 3114

Query: 781  SSIMTPLPLSGCINLPVTVLGCFLVCHNRGRYLFKYQDRRASAEGHFDAGNQLIELWNRE 840
            S IM+PLPLSG +NLPVT+LGCFL+ +N GR+LFK ++ RA +E   DAG+ LI+ WN+E
Sbjct: 3115 SPIMSPLPLSGSVNLPVTILGCFLIRNNCGRFLFKNKNERAMSEPQLDAGDILIDAWNKE 3174

Query: 841  LMSCVCDSYVEMILEIQNLRKDVSSSIIDSSACPGINLSLKAYGDNIYSFWPRSSEGHVP 900
            LMSCV DSY+E+++E++ L ++ SSS  +SS    + LSLKAYG  +YSFWPRS++    
Sbjct: 3175 LMSCVRDSYIEIVVEMERLSREHSSSSTESSTARQLALSLKAYGHQLYSFWPRSNQ---- 3230

Query: 901  SGQLFDHNNTPSSSTAVLKADWECLKERVIHPFYSRIVDLPVWQLYSGNLVKAGEGMFLS 960
                    +  +    VLK +WECL E+VI PFY+R+ DLP+WQLYSG+LVKA EGMFL+
Sbjct: 3231 --------HDDAIEAEVLKPEWECLVEQVIRPFYARVADLPLWQLYSGSLVKAEEGMFLT 3282

Query: 961  QPGNGMIGSLLPGTVCSFVKEHYPVFSVPWELVTEIQVVGFSVREVRPKMVRDLLKVSSK 1020
            QPG+ +  +LLP TVCSFVKEHYPVFSVPWEL+ E+Q VG  VREV+PKMVR LL+ SS 
Sbjct: 3283 QPGSEVAVNLLPLTVCSFVKEHYPVFSVPWELLAEVQAVGIPVREVKPKMVRVLLRKSSA 3342

Query: 1021 PIVLRSVDMYIDVLEYCLSNFQQSVPSSLPRDSAQVDPTNINVICRETDVGSTSQPESNI 1080
             I LRSVD +IDVLEYCLS+ Q     +L  + A +D  N           STS      
Sbjct: 3343 SIDLRSVDTFIDVLEYCLSDIQ--FIEALNPEEANMDEGN-----------STS------ 3383

Query: 1081 HSSTGIASQGADSSGDALEMMTSLGKVLIDFGRGVVEDIGRAGAPLAYRNAVTGTGQNRD 1140
             +S+ +++Q    S DA EMMTSLGK L DFGR VVEDIGR G  +  R +      N D
Sbjct: 3384 -TSSSMSTQAQAGSSDAFEMMTSLGKALFDFGRVVVEDIGRTGDSIGQRIS-NNRYSNAD 3441

Query: 1141 QKFVSIAAELKGLPCPTATNHLQKLGLTELWIGNKEQQSLMDPLREKFVHPKVLERPLLG 1200
             +F+S   ELKGLPCPTATNHL +LG++ELW+GNKEQQ+LM P+  +F+HPKV ER  L 
Sbjct: 3442 PRFLSAVNELKGLPCPTATNHLARLGISELWLGNKEQQALMLPVSARFIHPKVFERSSLA 3501

Query: 1201 EIFSNLSLQGLLKLQNFSLHLLANHMKLIFHEDWVNHVMGSNMAPWLSWKKLPSSDSQGG 1260
            +IF   S+Q  LKL+++SL LLA++MK +FH+ WV+++  SN  PW SW+   SS    G
Sbjct: 3502 DIFLKSSVQAFLKLRSWSLPLLASNMKYLFHDHWVSYISESNSVPWFSWESTSSSSDDSG 3561

Query: 1261 PSSEWIKIFWKSFRGSQEELSLFSDWPLIPAFLGRPVLCRVRERHLVFIPPPLVQRTLQS 1320
            PS EWI++FWK+F GS +ELSLFSDWPLIPAFLGRP+LCRVRERHL+F PPP +Q   +S
Sbjct: 3562 PSPEWIQLFWKNFNGSADELSLFSDWPLIPAFLGRPILCRVRERHLIFFPPPALQPVSRS 3621

Query: 1321 GILDRESTENHVGGVSVSRDDTS-VAEAYTSAFDRLKISYPWLLSLLNQCNVPIFDEAFI 1379
            G  D   T++ +   SVS    S + + Y S FD  +  +PWL+ LLNQCN+P+ D A+I
Sbjct: 3622 GT-DMHQTDSDISTTSVSGGPLSELTQRYVSGFDLAQSKHPWLILLLNQCNIPVCDTAYI 3680

Query: 1380 DCATSSNCFSMPGGSLGQVIASKLVAAKQAGYFTEPNNLSASSCDALFSLFCDELFSNGF 1439
            DCA    C   P  SLGQ IASKL   K+AGY  +  +      D LF+L  ++  S+G 
Sbjct: 3681 DCAERCKCLPSPSVSLGQAIASKLAEGKRAGYIADIASFPTFGRDELFTLLANDFSSSGS 3740

Query: 1440 HYAQEEIEILRSLPIYKTVVGSYTKLKDQDQCMIPSNSFFKPHDEHCLSYATDSNGSSFL 1499
             Y   E+E+L SLPI+KTV GSYT L+    C+I  +SF KP+DE C  Y  DS    FL
Sbjct: 3741 SYQAYELEVLSSLPIFKTVTGSYTHLQRHGLCIISGDSFLKPYDECCFCYLPDSVECHFL 3800

Query: 1500 RALGVLELNDQQILVRFGLPGYERKSMNEQEDILIYVFKNWHDLQSNQSVVEALKETKFV 1559
            +ALGV  L++ Q LVRFGL  +E +S +E+EDILIYV+ NW DL+ +  V+EAL+E KFV
Sbjct: 3801 QALGVTVLHNHQTLVRFGLAEFESRSQSEREDILIYVYGNWLDLEVDSDVIEALREAKFV 3860

Query: 1560 RNSDEFSTDLLKPKELFDPADAILISIFFGERKKFPGERFSTDGWLRILRKLGLRTATEV 1619
            RNSDEFS++L K K+LFDP+D +L+S+FFGERK+FPGERFS++GWLRILRK GLRTA E 
Sbjct: 3861 RNSDEFSSELSKSKDLFDPSDTLLVSVFFGERKRFPGERFSSEGWLRILRKAGLRTAAEA 3920

Query: 1620 DVIIECAKRVEFLGIECMKSGDLDDFEADTTNSRAEVSPEVWALGGSVVEFIFSNFALFF 1679
            DVI+ECAKRVEFLG E  +S + DDFE D  +S  ++S E+  L GSV+E I  NFA F+
Sbjct: 3921 DVILECAKRVEFLGNERNRSSEEDDFETDLVHSEKDISVELSTLAGSVIEAILLNFAGFY 3980

Query: 1680 SNNFCDLLGKIA-----------------------------------------------F 1692
            S  FC+ LG+IA                                               F
Sbjct: 3981 STAFCNTLGQIACVPAESGFPSLGGRKGGKRVLTRYSEAVLLRDWPLAWSSVPILSTQRF 4040

Query: 1693 VPSELGFPSVGCK------------RVIGKNGGEDTLAHWPIASGLKNIEECTCEILKYL 1740
            +P    + ++  K            +VIG+NGGEDTLAHWP    +  I+  +CE+LKYL
Sbjct: 4041 IPPGFSWTALRLKSPPIFSTVLKHLQVIGRNGGEDTLAHWPNDPNVMTIDVTSCEVLKYL 4100

Query: 1741 DKIWGSLSPS 1750
            + +W SL+ S
Sbjct: 4101 EIVWDSLTTS 4110



 Score =  294 bits (753), Expect = 3e-79
 Identities = 245/846 (28%), Positives = 390/846 (45%), Gaps = 94/846 (11%)

Query: 1    LYDPRVPELKKMLHGDVFFPSDKFLDPEILDTLVCLGLRTTLGFTGLLDCARSVSLLHDS 60
            L+DPR  EL  +L     FP+  F    ILD L  LGL+TT+    +L+ AR V  L   
Sbjct: 947  LHDPRNEELYALLEDSDCFPASGFQGSAILDMLQGLGLKTTVSPETILESARLVERLMHK 1006

Query: 61   GDTEASKHGKGLLVFLDKLACKLSSNGESENDDQSLAVRSNITMDDAVVYDGFPKDENSL 120
               +A   GK L  FL+  A K   +  SE              DD  +   F +   + 
Sbjct: 1007 DLEKAHSRGKVLFSFLEVNAVKWLPDQSSE--------------DDGAINRIFSRAATAF 1052

Query: 121  IDDVDLFMSSLINDMVEEEFWSELKLITWCPVILDPAVRGLPWLKSSKQVALPTVVRPKS 180
                     +L  ++V+  FWSELK+I WCPV++    + LPW   +  VA P +VRPK+
Sbjct: 1053 RP------RNLTCNLVK--FWSELKMICWCPVLVSAPFQTLPWPVVTSTVAPPKLVRPKT 1104

Query: 181  QMWLVSSSMLILDGECGTTYLQTKLGWMDCPNIGVLSRQLIELSKSYQQLKTHSLLDPDF 240
             MWLVS+SM ILDGEC +T L   LGW+  P    ++ QL+EL K+        L+D   
Sbjct: 1105 DMWLVSASMRILDGECSSTALAYNLGWLSHPGGSAIAAQLLELGKN-----NEILIDQVL 1159

Query: 241  DVKLQKEIPCLYSKLQEYINTDDFNDLKARLDGVSWVWIGDDFVSPNALAFDSPVKFTPY 300
              +L   +P +YS L   + +D+ + +KA L+G  W+W+GD F + + +  D P++  PY
Sbjct: 1160 RQELALAMPKIYSILARLLGSDEMDIVKAVLEGSRWIWVGDGFATLSEVVLDGPLQLVPY 1219

Query: 301  LYVVSSELSEYKDLMIKLGVRLSFGILDYLHVLQRLQNDLNGVPLSTDQLNFVRCVHEAI 360
            + V+ ++L+ ++ L ++LGVR      DY  VL R+       PL   ++     + + +
Sbjct: 1220 IRVIPTDLAVFRGLFVELGVREFLTPSDYADVLCRIAVRKGTSPLDPQEIRAAVLIAQQL 1279

Query: 361  AEC-CLEKPLFEPFDSPLWIPDTFGVLMHAGDLVYNDAPWL------------ENSSLIG 407
            AE   L+K         +++PD  G L  + DLVYNDAPWL            E++ L+ 
Sbjct: 1280 AEAQFLDK-------VTIYLPDVSGRLFPSSDLVYNDAPWLTASDNLNSSFSAESTMLLN 1332

Query: 408  -----RHFVHPSISNDLAERLGVQSVRCLSLVSEDMTKDLPCMG-----------YNKVS 451
                 + FVH +ISN++AE+LGV+S+R + L     + +    G             ++ 
Sbjct: 1333 AKRTMQKFVHGNISNEVAEKLGVRSLRRVLLAESADSMNFSLSGAAEAFGQHEALTTRLK 1392

Query: 452  ELLALYGNSEFLLFDLLELADCCKAKKLHLIYDKREHPRQSLLQHNLGEFQGPALVAIFE 511
             +L +Y +   +LF+L++ A+   A ++  + DK  +   SLL   + ++QGPAL     
Sbjct: 1393 HILEMYADGPGILFELVQNAEDAGASEVTFLLDKTHYGTSSLLSPEMADWQGPALYCFNN 1452

Query: 512  GACLSREEFSNFQLLPPWKLRGNTL--NYGLGLVGCYSICDLLSVVSGGYFYMFDPRGLV 569
                 ++ ++  ++    KL        +GLG    Y   D+   VSG    MFDP    
Sbjct: 1453 SVFTQQDMYAISRIGQASKLEKPFAIGRFGLGFNCVYHFTDIPGFVSGENIVMFDPHANH 1512

Query: 570  LSAPSSNAPSGKMFSLIGTDLAQRFGDQFSPMLIDQNDLWSLSDSTIIRMPLSSDCLKVG 629
            L   S   P G      G  +  +F DQF+P L    DL      T+ R PL +  +   
Sbjct: 1513 LPGISPTHP-GLRIKFAGRYILDQFPDQFAPFLHFGCDLEHTFPGTLFRFPLRNASVAPR 1571

Query: 630  HDV-----ASNRIKHITDVFMEHGSRTLLFLKSVLQVSISTWEEGHSHP-------CQNF 677
              +     A   +  +   F    S  L+FL++V  VSI T +EG  H        C++ 
Sbjct: 1572 SHIKKETYAPEDVLSLFTSFSGVVSEALIFLRNVKTVSIFT-KEGAGHEMQLLHRVCKDH 1630

Query: 678  SISID----PSSSIMRNPFSEKKWRKFQLSRLFSS-SNTAI-----KMHVIDVSLYSEGT 727
            ++  D    PSS +  +   E  +      +L    SNT +     K   I V+      
Sbjct: 1631 NVGQDTEPKPSSQVF-SLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSG 1689

Query: 728  TFIDRWLLALSLGSGQTRNMALDRRYLAYNLTPVAGIAALIS--RNGHHADV-YSTSSIM 784
              +  W+    L +G ++   L+   +++ L P A +A  I+  +N +  D+  S S+I 
Sbjct: 1690 CILHGWITGECLNAGVSKK-NLNLPEMSHKLIPWASVAVHINSVKNENVEDLAASISNIF 1748

Query: 785  TPLPLS 790
             P  +S
Sbjct: 1749 GPSTIS 1754



 Score =  131 bits (329), Expect = 4e-30
 Identities = 159/647 (24%), Positives = 260/647 (39%), Gaps = 126/647 (19%)

Query: 432  SLVSEDMTKDLPCMGYNKVSELLALYGNSEFLLFDLLELADCCKAKKLHLIYDKREHPRQ 491
            SL+ ED  + +      ++ E+L  Y     +L +L++ AD   A K+ L  D+R H   
Sbjct: 3    SLLLEDFGQKVDLT--RRIREVLLNYPEGTTVLKELIQNADDAGATKVRLCLDRRVHGSG 60

Query: 492  SLLQHNLGEFQGPALVAIFEGACLSREEFSNFQLLPPWKLRG---NTLNYGLGLVGCYSI 548
            SLL  +L ++QGP+L+A +  A  + E+F +   +      G    T  +G+G    Y +
Sbjct: 61   SLLSDSLAQWQGPSLLA-YNDAVFTEEDFVSISRIGGSGKHGQAWKTGRFGVGFNSVYHL 119

Query: 549  CDLLSVVSGGYFYMFDPRGLVLSAPSSNAPSGKMFSLIGTDLAQRFGDQFSPMLIDQNDL 608
             D+ S VSG Y  +FDP+G  L   S+  P GK    +G+    ++ DQF P      D+
Sbjct: 120  TDIPSFVSGKYVVLFDPQGAYLPNISAANP-GKRIDYVGSSALSQYKDQFLPYCAFGCDM 178

Query: 609  WSLSDSTIIRMPLSSDCLKVGHDVASNRIKH----------ITDVFMEHGSRTLLFLKSV 658
             S  + T+ R PL +         AS+R+            + D   E G  +LLFLK V
Sbjct: 179  RSPFNGTLFRFPLRNT-----EQAASSRLSRQAYFEDDISLMFDQLFEEGVFSLLFLKCV 233

Query: 659  LQVSISTWEEGHSHPCQNFSISIDPSSSIMRNPFSEKKWRKFQLSRLFSSSNTAIK-MHV 717
            L + + TW++G S P + +S S+        +P ++  W +  + RL  +S +  + M  
Sbjct: 234  LSIEMYTWDDGDSEPKKLYSCSVS-------SPNNDTVWHRQAVLRLSKTSISGDREMDA 286

Query: 718  IDVSLYSEG------TTFIDRWLLALSLGSGQTR---NMALDRRYLAYNLTPVAGIAALI 768
              +   SE           DR+ +  ++ S  ++     A   +    +L P A +AA I
Sbjct: 287  FTLEFLSESEKGNQTKRRTDRFYIVQTMASASSKIGLFAATASKEYDIHLLPWASVAACI 346

Query: 769  SRNGHHADVYSTSSIMTPLPLSGCINLPVTVLGCFLVCHNRGRYLFKYQDRRASAEGHFD 828
            S +    ++         LPL     L V V G F V  NR R ++  +D         D
Sbjct: 347  SDDSSENNILKLGHAFCFLPLPVRTGLTVQVNGYFEVSSNR-RGIWYGED--------MD 397

Query: 829  AGNQLIELWNRELM-SCVCDSYVEMILEIQNLRKDVSSSIIDSSACPGINLSLKAYGDNI 887
               ++   WNR L+   V  S+  ++L ++         ++DS              D+ 
Sbjct: 398  RSGKVRSAWNRLLLEDVVAPSFARLLLCLR--------EVLDSR-------------DSY 436

Query: 888  YSFWPRSSEGHVPSGQLFDHNNTPSSSTAVLKADWECLKERVIHPFYSRIVDLPVW--QL 945
            +S WP  S                       +A W  L E++    Y  I + PV    L
Sbjct: 437  FSLWPSGS----------------------FEAPWSILVEQI----YKNICNAPVLFSDL 470

Query: 946  YSGNLVKAGEGMFLSQPGNG------------MIGSLLPGTVCSFVKEHYPVFSVPWELV 993
              G  V   +     +  +G            M    LP  V   + +H P F +P    
Sbjct: 471  DGGKWVSPADAYLHDEEFSGSKDLGDALLQLEMPIVCLPRLVFDMLLKH-PSFLLP---- 525

Query: 994  TEIQVVGFSVREVRPKMVRDLLKVSSKPIVLRSVDMYIDVLEYCLSN 1040
                      + V P  VR+ LK   K +      + + +LEYCL +
Sbjct: 526  ----------KVVTPDRVRNFLK-ECKTLSALKKSLKLVLLEYCLDD 561



 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 90/413 (21%), Positives = 157/413 (37%), Gaps = 63/413 (15%)

Query: 1244 APW-LSWKKLPSSDSQGGPSSEWIKIFWKSFRGSQEELSLFSDWPLIPAFLGRPVLCRVR 1302
            A W LS K L +   +G P+ EWI++ W   + S ++LS+FS WP++P   G    C   
Sbjct: 2060 ADWHLSEKILWTPGQRGHPTVEWIRVLWSYLKLSCDDLSVFSKWPILPVEDG----C--- 2112

Query: 1303 ERHLVFIPPPLVQRTLQSGILDRESTENHVGGVSVSRDDTSVAEAYTSAFDRLKISYPWL 1362
                      L+Q  L S ++  +    ++  + +      +          L + +P L
Sbjct: 2113 ----------LMQLILNSNVIRDDGWSENMSSLLLKCGCRFLNR-------ELPVEHPQL 2155

Query: 1363 LSLLNQCNVPIFDEAFIDCATSSNCFSMPGGSLGQVIASKLVAAKQAGYFTEPNNLSASS 1422
                         E F+   T++       G L  ++A         G F    N+S   
Sbjct: 2156 -------------ETFVQPPTAT-------GILNALLAISGGHENIKGIFL---NVSEGE 2192

Query: 1423 CDALFSLFCDELFSNGFHYAQEEIEILRSLPIYKTVVG-SYTKLKDQDQCMIPSNSFFKP 1481
               L +      + +G H  +   E ++ LPI+++        L    + + P       
Sbjct: 2193 LHELRNFILQSKWFSGGHMNEVHFETIKHLPIFESYRSRKLVSLNCPVKWLKPDGIREDL 2252

Query: 1482 HDEHCLSYATDSNGSSFLRALGVLELNDQQILVRFGLPGYERKSMNEQEDILIYVFKNWH 1541
             D+  +   ++   + F R L + E +  +      L          Q++ L+ +  + +
Sbjct: 2253 LDDDFVRLDSERERTIFKRYLQIKEPSKMEFYKACVL--NRMSEFLSQQEALLAILHDLN 2310

Query: 1542 DL-QSNQSVVEALKETKFVRNSDEFSTDLLKPKELFDPADAILISIFFGERKKFPGERFS 1600
            DL  ++ S+  A+  T FV  ++       +P  L+DP    L  +   E   FP E+FS
Sbjct: 2311 DLVVADVSLQCAISTTPFVLAANGL---WQQPSRLYDPRVPALQELLHKE-VYFPSEKFS 2366

Query: 1601 TDGWLRILRKLGLRTATEVDVIIECAKRVEFLGIECMKSGDLDDFEADTTNSR 1653
                L  L  LGLRT  +    ++ A+ V  L        DL D EA     R
Sbjct: 2367 DSKILDALVGLGLRTTLDCSTYLDAARSVSML-------HDLGDLEASRYGRR 2412



 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 89/455 (19%), Positives = 172/455 (37%), Gaps = 72/455 (15%)

Query: 1189 VHPKVLERPLLGEIFSNLSLQGLLKLQN---FSLHLLANHMKLIFHEDWVNHVMGSNMAP 1245
            V+ +V+++ +   +++ L      +  N   FS+H L      +   +W +         
Sbjct: 610  VYDRVIDKNIPPPLYTRLFAIAESRTANVAIFSIHNLLQLFPRLVPAEWKHRSK------ 663

Query: 1246 WLSWKKLPSSDSQGGPSSEWIKIFWKSFRGSQEELSLFSDWPLIPAFLGRPVLCRVRERH 1305
             +SW    + D    PSS W  +FW+      + LSLF DWP++P+  G   +   + + 
Sbjct: 664  -ISWHPESNRDH---PSSSWFVLFWQYLDKRCQSLSLFCDWPILPSTSGYLYIASPQSKL 719

Query: 1306 LVFIPPPLVQRTLQSGILDRESTENHVGGVSVSRDDTSVAEAYTSAFDRLKISYPWLLSL 1365
            +     P   R     +L++      +GG  ++              + +K+ +  L S 
Sbjct: 720  INAEKLPAAVR----NVLEK------IGGKILN--------------NNIKVEHSDLSSF 755

Query: 1366 LNQCNVPIFDEAFIDCATSSNCFSMPGGSLGQVIASKLVAAKQAGYFTEPNNLSASSCDA 1425
            ++  +     E+  D A+S                  L   +   Y     +L+A   D 
Sbjct: 756  VSDASYTGVLESIFDAASSD-----------------LDGVQNLIY-----DLNAQEKDE 793

Query: 1426 LFSLFCDELFSNGFHYAQEEIEILRSLPIYKTVVGSYTKLKDQDQCMIPSNSFFKPHD-E 1484
            L S   D  +  G       + I + LPI++ + G  +  + +   ++       P D  
Sbjct: 794  LRSFLLDPKWHIGHQIGDLYLRICKILPIHR-IYGETSAQESKYSDLVNPPKHLPPLDVP 852

Query: 1485 HCL---SYATDSNGSS---FLRALGVLELNDQQILVRFGLPGYERKSMNEQEDILIYVFK 1538
             CL    +     GS      R  G+  +       +      E      ++ ++I + +
Sbjct: 853  ACLLGCEFILCCQGSEEDVLSRYYGIERMRKSNFYRQNVFNRIEVLQPEIRDQVMISILQ 912

Query: 1539 NWHDL-QSNQSVVEALKETKFVRNSDEFSTDLLKPKELFDPADAILISIFFGERKKFPGE 1597
            +   L   ++ + E L+  +FV      +  L +P  L DP +  L ++   +   FP  
Sbjct: 913  DLPQLCLEDRLLREELQNLEFV---PTVNGPLKRPSVLHDPRNEELYAL-LEDSDCFPAS 968

Query: 1598 RFSTDGWLRILRKLGLRTATEVDVIIECAKRVEFL 1632
             F     L +L+ LGL+T    + I+E A+ VE L
Sbjct: 969  GFQGSAILDMLQGLGLKTTVSPETILESARLVERL 1003



 Score = 31.2 bits (69), Expect = 5.6
 Identities = 34/157 (21%), Positives = 63/157 (39%), Gaps = 11/157 (7%)

Query: 280  GDDFVSPNALAFDSPVKFTPYLYVVSSELSEYKDLMIKLGVRLSFGILDYLHVLQRLQND 339
            G   V  ++L    P+  +P+ + + S    + +++  LG+     +     +L +LQ  
Sbjct: 4126 GTRLVGASSLFVRLPINLSPFAFELPSLYLPFLNILKDLGLNDVLSVAAAKDILSKLQKL 4185

Query: 340  LNGVPLSTDQLNFVRCVHEAIAECCLE-----KPLFEPFDSPLWIPDTFGVLMHAGDLVY 394
                 L+ ++L   R V E +   C E      P      S + +PD    L+HA   VY
Sbjct: 4186 CGYRRLNPNEL---RAVMEILHFLCDEINTTKPPEINTIKSDVIVPDDGCRLVHALSCVY 4242

Query: 395  ND---APWLENSSLIGRHFVHPSISNDLAERLGVQSV 428
             D   + ++          VHP +   +   LGV+ +
Sbjct: 4243 VDSFGSRYVRYIDTARLRLVHPLLPERICLDLGVRKL 4279


>At5g19400 putative protein
          Length = 1092

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 61  GDTEASKHGKGLLVFLDKLACKLSSNGESENDDQSLAVRSNITMDDAVVYDGFPKDENSL 120
           GD  +S    G+LVF++ LAC       S+ DD+  AVR++      V ++       + 
Sbjct: 430 GDPSSSYFLPGVLVFVEWLACCPDIALGSDPDDRQTAVRNSFWNQFVVFFNQVLSLGPTF 489

Query: 121 IDDVD---LFMSSLINDMVEEE----FWSELKLITWCPVI 153
           IDDV+    F +  + D  E E     W + +L  + P++
Sbjct: 490 IDDVEDETCFSNMSLYDERETENRLALWEDYELRGFLPLL 529


>At3g27180 hypothetical protein
          Length = 499

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 27/101 (26%), Positives = 38/101 (36%), Gaps = 35/101 (34%)

Query: 1257 SQGGPSSEW--IKIFWKSFRGSQEELSLFSDWPLIPAFLGRPVLCRVRERHLVFIPPPLV 1314
            S GGP+S++  I   W +F+ S   +   + W                 RHL        
Sbjct: 212  STGGPNSKFHLIHSVWANFQTSTNNIIFGNRW-----------------RHL-------- 246

Query: 1315 QRTLQSGILDRESTENHVGGVSVSRDDTSVAEAYTSAFDRL 1355
                    L       HVGG+ +S D +S  +A T AFD L
Sbjct: 247  --------LGERDFWEHVGGIDISLDPSSFGQANTRAFDSL 279


>At1g21645 putative SecA-type chloroplast protein transport factor
          Length = 882

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 22/65 (33%), Positives = 36/65 (54%), Gaps = 7/65 (10%)

Query: 427 SVRCLSLVSEDMTKDLPCMGYNKVSELLALYGNSEFLLF----DLLELADCCKAKKLHLI 482
           +VR +S ++ D  +DLP  G   V +LLAL  N+E   F     L+E  +  + ++ H +
Sbjct: 707 AVRLISKITND--EDLPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKH-V 763

Query: 483 YDKRE 487
           YD R+
Sbjct: 764 YDLRQ 768


>At1g19360 unknown protein
          Length = 428

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 1434 LFSNGFHYAQEEIEILRSLPIYKTVVGSYTKLKDQDQCMIPSNSFFKPHDEHCLSYATDS 1493
            +F++GF Y +  I    S+ +   V    +K K  DQ +     F+  H E+   +A+  
Sbjct: 305  VFNSGFFYLRPTIP---SIELLDRVADRLSKAKVWDQAVFNEELFYPSHPEYTALHASK- 360

Query: 1494 NGSSFLRALGVLELNDQQILVRFGLPGYERKSMNEQEDILIYVFKNWHDLQSNQSVVE 1551
                  R + + E  + ++L +     +E K   + + ++++V  +   L   Q+VVE
Sbjct: 361  ------RVMDMYEFMNSKVLFKTVRKNHELK--KKVKPVIVHVNYHPDKLNRMQAVVE 410


>At2g17910 putative non-LTR retroelement reverse transcriptase
          Length = 1344

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 6/69 (8%)

Query: 1222 LANHMKLIFHEDWVNHVMGSNMAPWLSWKKLPSSDSQGGPSSEWIKIF------WKSFRG 1275
            L   +  +  + W N +       WLSW++L     QGG   + ++ F       +++R 
Sbjct: 792  LCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRV 851

Query: 1276 SQEELSLFS 1284
             QE+ SLFS
Sbjct: 852  LQEKGSLFS 860


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,376,703
Number of Sequences: 26719
Number of extensions: 1888496
Number of successful extensions: 4264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4230
Number of HSP's gapped (non-prelim): 15
length of query: 1754
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1641
effective length of database: 8,299,349
effective search space: 13619231709
effective search space used: 13619231709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)