BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0233.11
(95 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17870 plastid-specific ribosomal protein 6 precursor (Psrp-6... 102 3e-23
At4g03760 hypothetical protein 30 0.27
At5g14380 agp6 28 1.0
At3g43680 putative protein 27 1.3
At5g43810 PINHEAD (gb|AAD40098.1); translation initiation factor 27 1.7
At5g16010 steroid 5alpha-reductase-like protein 27 1.7
At3g53330 putative protein 27 1.7
At2g43680 SF16 protein {Helianthus annuus} like protein 26 3.0
At5g47490 putative protein 25 5.1
At2g29250 putative protein kinase 25 5.1
At5g07770 unknown protein 25 6.6
At4g02830 predicted protein of unknown function 25 6.6
At5g24030 unknown protein 25 8.7
At2g23630 putative pectinesterase 25 8.7
At1g73730 ethylene-insensitive3-like3 (EIL3) 25 8.7
At1g29220 unknown protein 25 8.7
>At5g17870 plastid-specific ribosomal protein 6 precursor (Psrp-6)
- like
Length = 106
Score = 102 bits (254), Expect = 3e-23
Identities = 53/89 (59%), Positives = 66/89 (73%), Gaps = 12/89 (13%)
Query: 6 SCSSIFG---VAMAAAPP----QMERRGNG-----VIVCSSRPQKKATAHHRKSRPRKSQ 53
S S+IFG V +AA+P Q+ + GNG VI CSSRPQKK+TAHHRK+RP+K+Q
Sbjct: 2 SVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKTQ 61
Query: 54 PWDINRKPTVYAPLPPLPSDWTLVVSAAD 82
PWDI RKPTVYAPLPPLP++W+ A+D
Sbjct: 62 PWDIKRKPTVYAPLPPLPAEWSPFTLASD 90
>At4g03760 hypothetical protein
Length = 723
Score = 29.6 bits (65), Expect = 0.27
Identities = 22/62 (35%), Positives = 30/62 (47%), Gaps = 3/62 (4%)
Query: 37 QKKATAHHRKSRPRKSQP---WDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTP 93
++K A+ PR + P D N P V AP+ P PS+ V A A EAV V P
Sbjct: 410 EEKRLANAGLILPRVASPDATQDRNVAPEVAAPVDPTPSEAQEVDPTAVAPLPEAVVVLP 469
Query: 94 SA 95
++
Sbjct: 470 AS 471
>At5g14380 agp6
Length = 150
Score = 27.7 bits (60), Expect = 1.0
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 4/44 (9%)
Query: 52 SQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
S P D PTV +P P P SAAD SD A +P +
Sbjct: 87 SSPSDSAEAPTVSSPPAPTPDS----TSAADGPSDGPTAESPKS 126
>At3g43680 putative protein
Length = 539
Score = 27.3 bits (59), Expect = 1.3
Identities = 19/62 (30%), Positives = 28/62 (44%), Gaps = 3/62 (4%)
Query: 37 QKKATAHHRKSRPRKSQP---WDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTP 93
+ K A R PR + P D + P V AP+ P P++ V A A EA+ P
Sbjct: 185 EDKRLAEARLISPRAASPEATQDQDVAPDVAAPVDPAPAESQEVDPTAAAPLPEAIVALP 244
Query: 94 SA 95
++
Sbjct: 245 AS 246
>At5g43810 PINHEAD (gb|AAD40098.1); translation initiation factor
Length = 988
Score = 26.9 bits (58), Expect = 1.7
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 33 SSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAV 91
S P K + R RKS D+ +P+ PP PS T + + A++ E VAV
Sbjct: 57 SPSPPSKNRSRRRNRGGRKSDQGDVCMRPSSRPRKPPPPSQ-TTSSAVSVATAGEIVAV 114
>At5g16010 steroid 5alpha-reductase-like protein
Length = 268
Score = 26.9 bits (58), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 2 SVLSSCSSIFGVAMAAAPPQMERRGN-------GVIVCSSRPQKK 39
S+L +C S+ GVA A E RGN GV S +PQK+
Sbjct: 14 SILLNCMSVVGVAALANIGWSEIRGNHLKYSKFGVSSSSPQPQKE 58
>At3g53330 putative protein
Length = 310
Score = 26.9 bits (58), Expect = 1.7
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 16 AAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPPLPS 72
+++P + G+ V SS + HH ++RP P P PP PS
Sbjct: 77 SSSPKAVYNTGHDVTFLSSMKSHVRSLHHHEARPMN------GHDPLAITPSPPPPS 127
>At2g43680 SF16 protein {Helianthus annuus} like protein
Length = 668
Score = 26.2 bits (56), Expect = 3.0
Identities = 22/70 (31%), Positives = 28/70 (39%), Gaps = 18/70 (25%)
Query: 14 AMAAAPPQMERRGNGVIVCSSRPQKKATAHH----RKSRPRKSQPWDINRK--------P 61
A A APP + V P ++ T H R S PR + P I+ K P
Sbjct: 169 ASANAPPTLRPASTRV------PSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPP 222
Query: 62 TVYAPLPPLP 71
T+ P PP P
Sbjct: 223 TLDTPRPPSP 232
>At5g47490 putative protein
Length = 1361
Score = 25.4 bits (54), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 61 PTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
P+V PP+P+ V AA AS A+ P+A
Sbjct: 1230 PSVQTAKPPIPAKAKFFVPAAPASFSNDQAMEPAA 1264
>At2g29250 putative protein kinase
Length = 623
Score = 25.4 bits (54), Expect = 5.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 51 KSQPWDINRKPTVYAPLPPLPSDWTLVVSAADASSDEAVAVTPSA 95
K+ +DI + P++ PLPPL + VS SS+ + + +A
Sbjct: 266 KASDFDITKLPSLPDPLPPLSPSPSPPVSVMKNSSNTMLIIIIAA 310
>At5g07770 unknown protein
Length = 721
Score = 25.0 bits (53), Expect = 6.6
Identities = 9/38 (23%), Positives = 19/38 (49%)
Query: 19 PPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWD 56
PP + +G G ++C RP + ++ R + + W+
Sbjct: 52 PPMFDPKGAGRVICCLRPGQNKSSLKRFQCGKLTNAWE 89
>At4g02830 predicted protein of unknown function
Length = 184
Score = 25.0 bits (53), Expect = 6.6
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 5 SSCSSIFGVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWDINRKPTVY 64
++CS + + NG+ + S RP+ + +KS + P I + +
Sbjct: 114 TACSPVLLPTRVVQALNLNIHNNGIHI-SPRPEIRENDSKKKSEMLATTPIKIEAENPID 172
Query: 65 APLPPLPSDW 74
+P LP +W
Sbjct: 173 SPEKLLPEEW 182
>At5g24030 unknown protein
Length = 635
Score = 24.6 bits (52), Expect = 8.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 33 SSRPQKKATAHHRKSRPRKSQPWDINRKPTVYAPLPP 69
+SR AHH ++ PW RKP++ P P
Sbjct: 62 TSRSIDTMEAHHHNYN--ETTPWTHQRKPSISMPTSP 96
>At2g23630 putative pectinesterase
Length = 541
Score = 24.6 bits (52), Expect = 8.7
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 56 DINRKPTVYAPLPPLPSDWTLVVS 79
++N++ ++ P P +D+TL+VS
Sbjct: 145 NVNQRSVIFVPYPKPDADFTLLVS 168
>At1g73730 ethylene-insensitive3-like3 (EIL3)
Length = 567
Score = 24.6 bits (52), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 QMERRGNGVIVCSSRPQKKATAHHRKSRPR 50
Q+++ I S R Q KA H R+ RPR
Sbjct: 342 QIQKEQPTAISHSVRDQDKAEKHRRRKRPR 371
>At1g29220 unknown protein
Length = 351
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/45 (28%), Positives = 15/45 (32%)
Query: 12 GVAMAAAPPQMERRGNGVIVCSSRPQKKATAHHRKSRPRKSQPWD 56
G AA P + G + S P R RP K WD
Sbjct: 244 GAVFAAQKPNIPIPGIPALATSGLPSIPTEIAARDGRPNKKSKWD 288
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.314 0.124 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,196,816
Number of Sequences: 26719
Number of extensions: 82648
Number of successful extensions: 267
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 19
length of query: 95
length of database: 11,318,596
effective HSP length: 71
effective length of query: 24
effective length of database: 9,421,547
effective search space: 226117128
effective search space used: 226117128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0233.11