BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0228a.4
(1904 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 670 0.0
At2g31080 putative non-LTR retroelement reverse transcriptase 649 0.0
At4g15590 reverse transcriptase like protein 620 e-177
At2g45230 putative non-LTR retroelement reverse transcriptase 497 e-140
At1g47910 reverse transcriptase, putative 483 e-136
At2g31520 putative non-LTR retroelement reverse transcriptase 481 e-135
At2g25550 putative non-LTR retroelement reverse transcriptase 480 e-135
At4g09710 RNA-directed DNA polymerase -like protein 467 e-131
At1g24640 hypothetical protein 458 e-128
At2g01840 putative non-LTR retroelement reverse transcriptase 454 e-127
At2g17910 putative non-LTR retroelement reverse transcriptase 449 e-126
At4g10830 putative protein 442 e-123
At2g05200 putative non-LTR retroelement reverse transcriptase 437 e-122
At3g31420 hypothetical protein 422 e-118
At2g11240 pseudogene 397 e-110
At2g41580 putative non-LTR retroelement reverse transcriptase 388 e-107
At3g45550 putative protein 381 e-105
At2g16680 putative non-LTR retroelement reverse transcriptase 379 e-105
At1g25430 hypothetical protein 358 2e-98
At1g31100 hypothetical protein 345 1e-94
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 670 bits (1728), Expect = 0.0
Identities = 386/1001 (38%), Positives = 560/1001 (55%), Gaps = 56/1001 (5%)
Query: 724 NFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDHSPLL 783
+ IDLGF G+KFTW+R R VAKRLDR L RL + EA V HL + SDH+PL
Sbjct: 734 SLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARLKWQEASVLHLPFLASDHAPLY 793
Query: 784 LRCHAP-TGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGNLQDKLQRVQEAATEFNKT 842
++ +G+R RPFRF+AAW+SHP F+ ++ TSW +D + + L+
Sbjct: 794 VQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWN-KDISTPEALK------------ 840
Query: 843 VFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEMLWFQKSREN 902
+Q+ D S+ L + E +L K++ +L QEE++W QKSRE
Sbjct: 841 ------------------VQELLDLHQSDDLLKKEEELLKDFDVVLEQEEVVWMQKSREK 882
Query: 903 WVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNLFSL-DVQ 961
W GDRNTKFFH T++RR+RN+I L DG W ++ L+ A +Y L+SL D+
Sbjct: 883 WFVHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSNAQELETHAIDYYKRLYSLDDLD 942
Query: 962 VRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYKQYWHI 1021
++ + + + L P S EV AI SM +KAPGPDGF FY+Q W +
Sbjct: 943 AVVEQLPQEGFTALSEADFSSLTKPFSPLEVEGAIRSMGKYKAPGPDGFQPVFYQQGWEV 1002
Query: 1022 LGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKLITKVLV 1081
+GE + V F +G E L+VLI KV P K+ RPISLCNV +K ITKV+V
Sbjct: 1003 VGESVTKFVMDFFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMV 1062
Query: 1082 NRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKTGGGLVALKIDLEKAYDR 1141
R + +++KL+ P Q SFI GR + DNI++ QEV+H++ +K G + LK+DLEKAYDR
Sbjct: 1063 GRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDR 1122
Query: 1142 VNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQGDPLSPYL 1201
+ WD L TL G P V IM V P++ +LWNG K +F RGLRQGDPLSPYL
Sbjct: 1123 IRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYL 1182
Query: 1202 FVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQLRLIKHTL 1261
FVLC+ERL I++ + KW+P+++S+ G +SH+ FADD++LF +AS DQ+R+++ L
Sbjct: 1183 FVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVL 1242
Query: 1262 ADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLLQGRVKRD 1321
FC ASG KV+LEKS++ FSK V + + +S G+ +LGKYLG+P+LQ R+ ++
Sbjct: 1243 EKFCGASGQKVSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKE 1302
Query: 1322 HFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCNHVDKMVR 1381
F +I++ ++RLA WK +L+ AGR+ L K++L+S+ VH M ++ LP S + +DK+ R
Sbjct: 1303 TFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSR 1362
Query: 1382 NCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNEKGKLWVQ 1441
+WG + HLVAW V + +G LG+RSA N+AL+ K+ LN+ LW Q
Sbjct: 1363 AFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQ 1422
Query: 1442 ALSQKYIKSGSILTEE---LRPGGSYVWRGI-LKARDSVSDGFGPRLGAGSS-SLWYSNW 1496
+ KY K G + + S WR + + RD + +G G W W
Sbjct: 1423 VVRSKY-KVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRW 1481
Query: 1497 LGTGKIA--SRIPFVHITDTTLTVADIWRQG-AWNFDRLYTLLPQEIREEISSVQIPSIQ 1553
L IA S +P + + T D+WR G W+ ++ + R ++ +V + S+
Sbjct: 1482 LSETPIADDSIVP-LSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVT 1540
Query: 1554 TGEDRILWREASDDIYSASSAYQFLNEDGLPE---TGFWKLIWKASAPEKVRFFLWLVGR 1610
DR+ W SD ++ SA+ L D P + + +WK APE+VR FLWLV
Sbjct: 1541 GAHDRLAWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVN 1600
Query: 1611 DALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCP--GSVWVRGQLGRLLPWISDSA 1668
A+ TN++R R HL + C C +E HVLR CP +W R + R L +
Sbjct: 1601 QAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDR-IVPRRLQQSFFTM 1659
Query: 1669 TFRHWLFGHLQ-------NRDNTLFCAMAWNLWKWRNSFVF 1702
+ WL+ +L+ + +T+F W WKWR S +F
Sbjct: 1660 SLLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIF 1700
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 649 bits (1675), Expect = 0.0
Identities = 388/998 (38%), Positives = 537/998 (52%), Gaps = 66/998 (6%)
Query: 724 NFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDHSPLL 783
+ IDLGF G+KFTW R VAKRLDR RL + EA V HL + SDH+PL
Sbjct: 70 SLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDHAPLY 129
Query: 784 LRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGNLQDKLQRVQEAATEFNKTV 843
++ P R R ++N+ V
Sbjct: 130 VQLE-PLQQRKLR-----------------------------------------KWNREV 147
Query: 844 FGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEMLWFQKSRENW 903
FG+IH RK ++ ++ +Q S+ L E L KE +L QEE LWFQKSRE +
Sbjct: 148 FGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLWFQKSREKY 207
Query: 904 VRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNLFSL-DVQV 962
+ GDRNT FFH T++RR+RN+I L +D W TD L+ A +Y L+SL DV
Sbjct: 208 IELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLEDVSE 267
Query: 963 RRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYKQYWHIL 1022
RN + +I E+ L+ + EV SA+ SM FKAPGPDG+ FY+Q W +
Sbjct: 268 VRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETV 327
Query: 1023 GEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKLITKVLVN 1082
G + V F+ G LLVLI KV P +++ RP+SLCNV +K+ITK++V
Sbjct: 328 GPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVT 387
Query: 1083 RFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKTGGGLVALKIDLEKAYDRV 1142
R + ++ KL+ P Q SFI GR + DNI+L QE +H++ +K G + LK+DLEKAYDRV
Sbjct: 388 RLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRV 447
Query: 1143 NWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQGDPLSPYLF 1202
WDFL+ TL G IM GV P++SVLWNG + SF RGLRQGDPLSPYLF
Sbjct: 448 RWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLF 507
Query: 1203 VLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQLRLIKHTLA 1262
VLC+ERL I+ V + +W+P+ VS G +SH+ FADD++LF +AS Q+R+I+ L
Sbjct: 508 VLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLE 567
Query: 1263 DFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLLQGRVKRDH 1322
FCEASG KV+LEKS++ FS V + ++ +S GI LGKYLG+P+LQ R+ ++
Sbjct: 568 RFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKET 627
Query: 1323 FATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCNHVDKMVRN 1382
F ++E+V+ RLA WK L+ AGR+ L K++LSS+PVH M ++ LP S + +D+ R
Sbjct: 628 FGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRT 687
Query: 1383 CIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNEKGKLWVQA 1442
+WG + HL++W+ + + KA+G +GLRSAR N+AL+ K+ L +K LW +
Sbjct: 688 FLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARV 747
Query: 1443 LSQKYIKSGSILTEELR--PGGSYVWRGI-LKARDSVSDGFGPRLGAGSS-SLWYSNWLG 1498
+ +KY G T L+ P S WR + + R+ V G G G G + W WL
Sbjct: 748 VRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLL 807
Query: 1499 TGKIAS-RIPFVHITDTTLTVADIWRQGA-WNFDRLYTLLPQEIREEISSVQIPSIQTGE 1556
+ + + AD W G+ WN + L LP+ ++ + SV +
Sbjct: 808 QEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNG 867
Query: 1557 DRILWREASDDIYSASSAYQFLNED--GLPETG-FWKLIWKASAPEKVRFFLWLVGRDAL 1613
D I W+ D ++ SAY L D P G F+ IWK PE+VR F+WLV ++ +
Sbjct: 868 DEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVI 927
Query: 1614 PTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCPG--SVWVRGQLGRLLPWISD----S 1667
TN +R R HL+ A C C E HVLR CP +W RLLP S
Sbjct: 928 MTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIW-----RRLLPLRRHHEFFS 982
Query: 1668 ATFRHWLFGHLQNRDN---TLFCAMAWNLWKWRNSFVF 1702
+ WLF ++ TLF W WKWR VF
Sbjct: 983 QSLLEWLFTNMDPVKGIWPTLFGMGIWWAWKWRCCDVF 1020
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 620 bits (1599), Expect = e-177
Identities = 358/915 (39%), Positives = 510/915 (55%), Gaps = 61/915 (6%)
Query: 728 LGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDHSPLLLRCH 787
+GF G++FTW R + VAKRLDR L RL + EA L C
Sbjct: 1 MGFKGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEA----------------LLCP 44
Query: 788 APTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGNLQDK--LQRVQEAATEFNKTVFG 845
A D RPFRF+AAW+SH F+ ++ SW D L L R++ ++NK VFG
Sbjct: 45 AQNVDARRRPFRFEAAWLSHEGFKELLTASW---DTGLSTPVALNRLRWQLKKWNKEVFG 101
Query: 846 NIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEMLWFQKSRENWVR 905
NIH RK +V L+ +Q + ++ L E L KE+ +L+QEE LWFQKSRE +
Sbjct: 102 NIHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLA 161
Query: 906 FGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNLFSL-DVQVRR 964
GDRNT FFH TV+RR+RN+I L + W T+ L++ A +Y L+SL DV V R
Sbjct: 162 LGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVR 221
Query: 965 NRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYKQYWHILGE 1024
+ P + EE++ L P + +EV A+ SM FKAPGPDG+ FY+Q W +GE
Sbjct: 222 GTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGE 281
Query: 1025 DLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKLITKVLVNRF 1084
+ V F++G LLVL+ KV P ++ RP+SLCNV +K+ITK++V R
Sbjct: 282 SVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRL 341
Query: 1085 RPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKTGGGLVALKIDLEKAYDRVNW 1144
+ ++ KL+ P Q SFI GR + DNI++ QE +H++ +K G + LK+DLEKAYDR+ W
Sbjct: 342 KNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRIRW 401
Query: 1145 DFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQGDPLSPYLFVL 1204
DFL TL G + IM V P +S+LWNG K SF +RGLRQGDP+SPYLFVL
Sbjct: 402 DFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVL 461
Query: 1205 CMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQLRLIKHTLADF 1264
C+ERL QI+ V G W+ + +S+ G +SH+ FADD++LF +AS Q
Sbjct: 462 CIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASVAQ----------- 510
Query: 1265 CEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLLQGRVKRDHFA 1324
KV+LEKS++ FS V + + ++ GI LGKYLG+P+LQ R+ +D F
Sbjct: 511 ------KVSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFG 564
Query: 1325 TIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCNHVDKMVRNCI 1384
++E+V++RL+ WK+ L+ AGR+ L K++L S+P+H M S+ LP S+ +DK+ RN +
Sbjct: 565 EVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFL 624
Query: 1385 WGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNEKGKLWVQALS 1444
WG R HL++WK V + KA G LGLR+++ N ALL K+ LN+K LW + L
Sbjct: 625 WGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLR 684
Query: 1445 QKYIKSGSILTEELRPGGSY--VWRGILKARDSVSDGFGPRLGAGSSSLWYSNWLGTGKI 1502
+KY + + L P ++ WR I G G R G W+ +
Sbjct: 685 RKYKVTDVHDSSWLVPKATWSSTWRSI---------GVGLREGVA------KGWILHEPL 729
Query: 1503 ASRIP-FVHITDTTLTVADIWRQG-AWNFDRLYTLLPQEIREEISSVQIPSIQTGEDRIL 1560
+R + + V + W +G W+ +L LP+ + + + +V I + DRI
Sbjct: 730 CTRATCLLSPEELNARVEEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRIS 789
Query: 1561 WREASDDIYSASSAYQFL--NEDGLP-ETGFWKLIWKASAPEKVRFFLWLVGRDALPTNA 1617
W+ SD ++ SAY L E+ P F+K IW APE+VR FLWLVG+ + TN
Sbjct: 790 WQGTSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAPERVRVFLWLVGQQVIMTNV 849
Query: 1618 KRHRHHLATTASCIR 1632
+R R H+ C R
Sbjct: 850 ERVRRHIGDIEVCQR 864
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 497 bits (1280), Expect = e-140
Identities = 309/1022 (30%), Positives = 502/1022 (48%), Gaps = 47/1022 (4%)
Query: 719 MLEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSD 778
ML +C ++ G +F+W N V RLDR + + AW FP+A +L ++ SD
Sbjct: 163 MLNSCGLWEVNHSGYQFSWYGNRNDE-LVQCRLDRTVANQAWMELFPQAKATYLQKICSD 221
Query: 779 HSPLLLRCHAPTGD--RAARPFRFQAAWVSHPSFESVVNTSWRAQDGN----LQDKLQRV 832
HSPL+ GD R F++ WV F+ ++ W Q + +K+
Sbjct: 222 HSPLINNL---VGDNWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASC 278
Query: 833 QEAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEE 892
+ +++ + + R + ++ +L ++ + D LARL+++L +EY + EE
Sbjct: 279 RREISKWKRVSKPSSAVRIQELQFKLDAATKQIPF-DRRELARLKKELSQEYNN----EE 333
Query: 893 MLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFY 952
W +KSR W+R GDRNTK+FHA T RR +N+I L E+G T L A+ ++
Sbjct: 334 QFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYF 393
Query: 953 TNLFSLDVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHA 1012
LF+ + +EN TP + + + L+AP++ EEV+ A S+ K PGPDG +
Sbjct: 394 KKLFASEDVGYTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNG 453
Query: 1013 YFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVS 1072
+ Y+Q+W +G+ + MV + F++G + T + LIPK+ K+ D RPISLCNV
Sbjct: 454 FLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVI 513
Query: 1073 YKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTR-KTGGGLVAL 1131
YK+I K++ NR + +L L+S Q +F+ GR DNI++A E++H + + K +A+
Sbjct: 514 YKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAI 573
Query: 1132 KIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGL 1191
K D+ KAYDRV W FL + GF + LIM V++ VL NG+ RGL
Sbjct: 574 KTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGL 633
Query: 1192 RQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASK 1251
RQGDPLSPYLFV+C E L +Q+ ++ + ++V++ ISHL FADD + +C+ +
Sbjct: 634 RQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVND 693
Query: 1252 DQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGL 1311
+ L I + ++ ASG +VN KS + F K + + R+ + +GI R G YLGL
Sbjct: 694 EALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGL 753
Query: 1312 PLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDS 1371
P K + + +++ ++ W++N L+ G+ L K++ +LP + M +P +
Sbjct: 754 PESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKT 813
Query: 1372 VCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSF 1431
+C ++ ++ W R H AW +++ KA G LG + N ALLGK +
Sbjct: 814 ICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRM 873
Query: 1432 LNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSS-S 1490
+ EK L + +Y L L S+ W+ I +A+ + G +G G + +
Sbjct: 874 ITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETIN 933
Query: 1491 LWYSNWLGT--GKIASRIPFVHI-----TDTTLTVADIWRQGA--WNFDRLYTLLPQEIR 1541
+W W+G K A + H+ ++ V D+ WN++ + L P +
Sbjct: 934 VWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQ 993
Query: 1542 EEISSVQIPSIQTGEDRILWREASDDIYSASSAY----QFLNEDGLPE-------TGFWK 1590
E I +++ P + DR W + YS S Y + +N+ P+ ++
Sbjct: 994 ENILALR-PGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQ 1052
Query: 1591 LIWKASAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCPGS 1650
IWK P K+ FLW + L + HLA SC+RC + E H+L +CP +
Sbjct: 1053 QIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFA 1112
Query: 1651 --VWVRGQLGRLLPWISDSATFR---HWLFGHL----QNRDNTLFCAMAWNLWKWRNSFV 1701
W L + FR H L H ++ + L + W LWK RN V
Sbjct: 1113 RLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLV 1172
Query: 1702 FE 1703
F+
Sbjct: 1173 FK 1174
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 483 bits (1244), Expect = e-136
Identities = 307/959 (32%), Positives = 466/959 (48%), Gaps = 30/959 (3%)
Query: 777 SDHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRA----QDGNLQDKLQRV 832
SDHSP++ A R + FRF W+ ++ W ++G +KL
Sbjct: 4 SDHSPVIATI-ADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTNC 62
Query: 833 QEAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEE 892
+ A +++ K++ + ++ L Q++ D R E + L L++ Y D EE
Sbjct: 63 RRAISKWRKSLIPFGRQTIEDLKAELDVAQRDDD-RSREEITELTLRLKEAYRD----EE 117
Query: 893 MLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFY 952
W+QKSR W++ GD N+KFFHA T RR RN+I GL E+G W + +Q A ++
Sbjct: 118 QYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYF 177
Query: 953 TNLFSL-DVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFH 1011
NLF+ + QV + E Q I D L A + EVR+A+ + KAPGPDG
Sbjct: 178 QNLFTTANPQVFDEALGEVQV-LITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMT 236
Query: 1012 AYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNV 1071
A F+++ W I+ DL +V S Q G + L T + LIPK + PT++ +LRPISLCNV
Sbjct: 237 ALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNV 296
Query: 1072 SYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKT-GGGLVA 1130
YK+I+K+L R + +L L+S Q +F+ GR DNI++AQE+ H + T + +A
Sbjct: 297 GYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMA 356
Query: 1131 LKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRG 1190
+K D+ KAYD+V W+F+ A L GF + + IMW + T VL NG +RG
Sbjct: 357 IKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERG 416
Query: 1191 LRQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQAS 1250
LRQGDPLSPYLF+LC E L I+ + ++V+ +SHL FADD L FC+A+
Sbjct: 417 LRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKAN 476
Query: 1251 KDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLG 1310
K+Q +I L + SG ++N KS + F V + ++ ++GI +G YLG
Sbjct: 477 KEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLG 536
Query: 1311 LPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPD 1370
LP G K F+ + +++ +R+ W L+K G+ + KS+ ++LP + M LP
Sbjct: 537 LPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPK 596
Query: 1371 SVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHS 1430
++ + + V W G++R H +AW + SK+ G LG R+ N ALL K +
Sbjct: 597 AITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWR 656
Query: 1431 FLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSS- 1489
+ L+ + +Y + + L SY WR ++ AR V G R+G+G+S
Sbjct: 657 LITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASI 716
Query: 1490 SLWYSNWLGTGKIASRIPFVHITDTTLTVADI--WRQGAWNFDRLYTLLPQEIREEISSV 1547
S+W W+ I D +L V + R WN D L L E IS++
Sbjct: 717 SVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISAL 776
Query: 1548 QIPSIQTGEDRILWREASDDIYSASSAYQF----LNED----GLPETGFWKLIWKASAPE 1599
I + ED + W Y+ S Y LNE G T IWK P
Sbjct: 777 PIGN-PNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPP 835
Query: 1600 KVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRC--PGSVWVRGQL 1657
K+R FLW + +P + + + C+ CGA E H L +C +W Q+
Sbjct: 836 KLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQI 895
Query: 1658 GR---LLPWISDSATFRHWLFGHLQNRDNTLFCAMAWNLWKWRNSFVFEQVPWQPGDVM 1713
+ P S H + D+ + + W +WK RN VFE V P +++
Sbjct: 896 PTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPWIIWYIWKARNEKVFENVDKDPMEIL 954
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 481 bits (1237), Expect = e-135
Identities = 327/1064 (30%), Positives = 503/1064 (46%), Gaps = 70/1064 (6%)
Query: 715 NMLNMLEACNFIDLGFMGSKFTW--ERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHL 772
N NM+ C+ D+ G +F+W ER + V LDR + AW FP A E L
Sbjct: 314 NFRNMVSHCDIEDMRSKGDRFSWVGERHTH---TVKCCLDRVFINSAWTATFPYAETEFL 370
Query: 773 ARVYSDHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGN----LQDK 828
SDH P+L+ + + R ++ FRF + P+F+ +V TSWR + + ++
Sbjct: 371 DFTGSDHKPVLVHFNE-SFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITER 429
Query: 829 LQRVQEAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDIL 888
+ ++A N +R ++++ L + D + + +L+ L K + D
Sbjct: 430 ISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSD-- 487
Query: 889 YQEEMLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEA 948
EE+ W QKSR W++ GD+NT +FHA T R +N+++ + + G T + A
Sbjct: 488 --EEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHA 545
Query: 949 KRFYTNLFSLD-VQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGP 1007
+ F+TN+FS + ++V + ++ D L S E+ AI + KAPGP
Sbjct: 546 QDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLD-LTKEFSDTEIYDAICQIGDDKAPGP 604
Query: 1008 DGFHAYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPIS 1067
DG A FYK W I+G D+ V F+ P + T + +IPK+ NPT L D RPI+
Sbjct: 605 DGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIA 664
Query: 1068 LCNVSYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRK-TGG 1126
LCNV YK+I+K LVNR + L+ +VS Q +FI GR DN+++A EVMH++ RK
Sbjct: 665 LCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSK 724
Query: 1127 GLVALKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFP 1186
+A+K D+ KAYDRV WDFL T+ FGF + + IM V++ SVL NGS
Sbjct: 725 TYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYIT 784
Query: 1187 LQRGLRQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLF 1246
RG+RQGDPLSPYLF+LC + L+ I G R VR+ I+HL FADD L F
Sbjct: 785 PTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFF 844
Query: 1247 CQASKDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLG 1306
CQA+ + +K + SG K+N++KS + F V Q +L ++ I G
Sbjct: 845 CQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGG 904
Query: 1307 KYLGLPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSL 1366
KYLGLP GR K++ F II++V R ++W L+ AG+ + KS+ ++PV+AM
Sbjct: 905 KYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCF 964
Query: 1367 WLPDSVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGK 1426
LP + + ++ ++ N W K N R VAWK + SK +G LG R K N+ALL K
Sbjct: 965 KLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAK 1024
Query: 1427 LVHSFLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGA 1486
+ L+ + + +Y K SIL ++R SY W +L + G +G
Sbjct: 1025 QAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGD 1084
Query: 1487 GSSSLWYSNWLGTGKIASRIP----FVHITDTTLTVADIW-RQGA---WNFDRLYTLLPQ 1538
G + +G I P T +T+ +++ R+G+ W+ ++ + Q
Sbjct: 1085 GQNIR-----IGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQ 1139
Query: 1539 EIREEISSVQIPSIQTGEDRILWREASDDIYSASSAYQFLNEDGLPETGFWKL------- 1591
I + + + D+I+W + Y+ S Y L D P T +
Sbjct: 1140 SDHGFIHRIYLAKSKK-PDKIIWNYNTTGEYTVRSGYWLLTHD--PSTNIPAINPPHGSI 1196
Query: 1592 -----IWKASAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRR 1646
IW K++ FLW AL T + + C RC E H L
Sbjct: 1197 DLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFT 1256
Query: 1647 CPGSVWVRGQLGRLLPWISDSATFRHWLFGH--LQNRDNTLFCA---------------M 1689
CP + W+SDS+ R+ L + +N N L +
Sbjct: 1257 CP--------FATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWL 1308
Query: 1690 AWNLWKWRNSFVFEQVPWQPGDVMRRIHLDTVEFHRLAQGTQRS 1733
W +WK RN+ VF + P + +T ++ Q +++
Sbjct: 1309 IWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 1352
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 480 bits (1235), Expect = e-135
Identities = 328/1065 (30%), Positives = 505/1065 (46%), Gaps = 72/1065 (6%)
Query: 715 NMLNMLEACNFIDLGFMGSKFTW--ERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHL 772
N NM+ C+ D+ G +F+W ER + V LDR + AW FP A +E L
Sbjct: 540 NFRNMVSHCDIEDMRSKGDRFSWVGERHTH---TVKCCLDRVFINSAWTATFPYAEIEFL 596
Query: 773 ARVYSDHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGN----LQDK 828
SDH P+L+ + + R ++ FRF + P+F+ +V TSWR + + ++
Sbjct: 597 DFTGSDHKPVLVHFNE-SFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITER 655
Query: 829 LQRVQEAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDIL 888
+ ++A N +R ++++ L + D + + +L+ L K + D
Sbjct: 656 ISSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSD-- 713
Query: 889 YQEEMLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEA 948
EE+ W QKSR W++ GD+NT +FHA T R +N+++ + + G T + A
Sbjct: 714 --EEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHA 771
Query: 949 KRFYTNLFSLD-VQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGP 1007
+ F+TN+FS + ++V + ++ D L S E+ AI + KAPGP
Sbjct: 772 QDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLD-LTKEFSDTEIYDAICQIGDDKAPGP 830
Query: 1008 DGFHAYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPIS 1067
DG A FYK W I+G D+ V F+ P + T + +IPK+ NPT L D RPI+
Sbjct: 831 DGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKITNPTTLSDYRPIA 890
Query: 1068 LCNVSYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRK-TGG 1126
LCNV YK+I+K LVNR + L+ +VS Q +FI GR DN+++A EVMH++ RK
Sbjct: 891 LCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSK 950
Query: 1127 GLVALKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFP 1186
+A+K D+ KAYDRV WDFL T+ FGF + + IM V++ SVL NGS
Sbjct: 951 TYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYIT 1010
Query: 1187 LQRGLRQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLF 1246
RG+RQGDPLSPYLF+LC + L+ I G R VR+ I+HL FADD L F
Sbjct: 1011 PTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFF 1070
Query: 1247 CQASKDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLG 1306
CQA+ + +K + SG K+N++KS + F V Q L ++ I G
Sbjct: 1071 CQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGG 1130
Query: 1307 KYLGLPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSL 1366
KYLGLP GR K++ F II++V R ++W L+ AG+ + KS+ ++PV+AM
Sbjct: 1131 KYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCF 1190
Query: 1367 WLPDSVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGK 1426
LP + + ++ ++ N W K N R VAWK + SK +G LG R K N+ALL K
Sbjct: 1191 KLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAK 1250
Query: 1427 LVHSFLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGA 1486
+ L+ + + +Y K SIL ++R SY W +L + G +G
Sbjct: 1251 QAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGD 1310
Query: 1487 GSSSLWYSNWLGTGKIASRIP----FVHITDTTLTVADIW-RQGA---WNFDRLYTLLPQ 1538
G + +G I P T +T+ +++ R+G+ W+ ++ + Q
Sbjct: 1311 GQNIR-----IGLDNIVDSHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQ 1365
Query: 1539 EIREEISSVQIPSIQTGEDRILWREASDDIYSASSAYQFLNEDGLPETGFWKL------- 1591
I + + + D+I+W + Y+ S Y L D P T +
Sbjct: 1366 SDHGFIHRIYLAKSKK-PDKIIWNYNTTGEYTVRSGYWLLTHD--PSTNIPAINPPHGSI 1422
Query: 1592 -----IWKASAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRR 1646
IW K++ FLW AL T + + SC RC E H L
Sbjct: 1423 DLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFT 1482
Query: 1647 CPGSVWVRGQLGRLLPW-ISDSATFRHWLFGH--LQNRDNTLFCA--------------- 1688
CP + + W +SDS+ R+ L + +N N L
Sbjct: 1483 CPFAT---------MAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVW 1533
Query: 1689 MAWNLWKWRNSFVFEQVPWQPGDVMRRIHLDTVEFHRLAQGTQRS 1733
+ W +WK RN+ VF + P + +T ++ Q +++
Sbjct: 1534 LIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 1578
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 467 bits (1201), Expect = e-131
Identities = 308/1004 (30%), Positives = 483/1004 (47%), Gaps = 52/1004 (5%)
Query: 727 DLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDHSPLLLRC 786
D+ G+ +W R + RLDRALG+ +W FP + E+L SDH PL+
Sbjct: 115 DINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTYF 173
Query: 787 HAPTGDRAARPFRFQAAWVSHPSFESVVNTSWR-AQDGNLQDKLQRVQEAATEFNKTVFG 845
AP R+ +PFRF ++V W A+ ++ K+ R +++ ++ K
Sbjct: 174 GAPPLKRS-KPFRFDRRLREKEEIRALVKEVWELARQDSVLYKISRCRQSIIKWTKEQNS 232
Query: 846 NIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEMLWFQKSRENWVR 905
N + ++ ++ L+ D D + + ++L+ Y QEE+ W Q SR W+
Sbjct: 233 NSAKAIKKAQQALESALSA-DIPDPSLIGSITQELEAAYR----QEELFWKQWSRVQWLN 287
Query: 906 FGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNLFSLDVQVRRN 965
GDRN +FHA T RR N + + G + + ++ N+F+
Sbjct: 288 SGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQNIFTTSNNSDLQ 347
Query: 966 RIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYKQYWHILGED 1025
+ E +P I ++L+ SL E++ A+ S+ + KAPGPDGF A F+ YW I+ D
Sbjct: 348 VVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASFFHAYWDIIEAD 407
Query: 1026 LHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKLITKVLVNRFR 1085
+ + S F + +P L T + LIPK+ P K+ D RPI+LCNV YK++ K+L R +
Sbjct: 408 VSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQ 467
Query: 1086 PLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKTGGGL---VALKIDLEKAYDRV 1142
P L +L+S Q +F+ GR DN+++ E++H + R +G +A+K D+ KAYDR+
Sbjct: 468 PWLSELISLHQSAFVPGRAIADNVLITHEILHFL--RVSGAKKYCSMAIKTDMSKAYDRI 525
Query: 1143 NWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQGDPLSPYLF 1202
W+FL+ L GF + + +M V T + S L NGS S RGLRQGDPLSPYLF
Sbjct: 526 KWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLF 585
Query: 1203 VLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQLRLIKHTLA 1262
+LC E L+ + E+G +RV++ ++HL FADD + FC+ + + + L
Sbjct: 586 ILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILK 645
Query: 1263 DFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLLQGRVKRDH 1322
+ ASG +NL KS + FS Q +R + + I +GKYLGLP GR KRD
Sbjct: 646 KYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDI 705
Query: 1323 FATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCNHVDKMVRN 1382
F++I++++ R SW L+ AG+ L K++LSS+P +AM LP S+C + ++
Sbjct: 706 FSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTR 765
Query: 1383 CIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNEKGKLWVQA 1442
W + R V+W +T +G LG R + KL L E L +
Sbjct: 766 FWWDSKPDKRKMAWVSWDKLTLPINEGGLGFRE-------IEAKLSWRILKEPHSLLSRV 818
Query: 1443 LSQKYIKSGSILTEELRPG-GSYVWRGILKARDSVSDGFGPRLGAGSS-SLWYSNWLGTG 1500
L KY + S + P S+ WRGIL RD + G G +G G S ++W WL
Sbjct: 819 LLGKYCNTSSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPS 878
Query: 1501 KIASRIPFVHITDTTLTVADIWRQG--AWNFDRLYTLLPQEIREEISSVQIPSIQTGEDR 1558
+ I T+ L+V D+ +WN + + LPQ ++I + I ++ +D
Sbjct: 879 SPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQ-YEDQIRKITINALPL-QDS 936
Query: 1559 ILWREASDDIYSASSAYQFLNEDGLP----ETGFWKLIWKASAPEKVRFFLWLVGRDALP 1614
++W Y+ + Y + P + + K IWK KV+ FLW + ALP
Sbjct: 937 LVWLPVKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALP 996
Query: 1615 TNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCP--GSVWVRGQLGRLLPWISDSATFRH 1672
R ++ +C RCG E + H++ CP VW L P + + + H
Sbjct: 997 VGEALSRRNIEAEVTCKRCGQ-TESSLHLMLLCPYAKKVW------ELAPVLFNPSEATH 1049
Query: 1673 WLFGHL-------------QNRDNTLFCAMAWNLWKWRNSFVFE 1703
L L+ + W+LWK RN +F+
Sbjct: 1050 SSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFD 1093
>At1g24640 hypothetical protein
Length = 1270
Score = 458 bits (1178), Expect = e-128
Identities = 321/1068 (30%), Positives = 510/1068 (47%), Gaps = 70/1068 (6%)
Query: 719 MLEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSD 778
M++ C+ +++ G+ FTW R G + RLDRA G+ W FP + L SD
Sbjct: 126 MIKGCDLVEMPAHGNGFTWAGR-RGDHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSD 184
Query: 779 HSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSW-RAQDG---NLQDKLQRVQE 834
H P+L++ + + D FRF ++ + + +W R + G ++ D+L+ ++
Sbjct: 185 HRPVLIKLMS-SQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRK 243
Query: 835 AATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEML 894
+ + + K N + ++E L+ +Q W + ++ L++DL K Y + EE
Sbjct: 244 SLSSWKKQNNLNSLDKINQLEAALEK-EQSLVWPIFQRVSVLKKDLAKAYRE----EEAY 298
Query: 895 WFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTN 954
W QKSR+ W+R G+RN+K+FHA R+R +I L +GN T + E A ++ N
Sbjct: 299 WKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGN 358
Query: 955 LFSLDVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYF 1014
LF P + + LV VS +E++ A+ S+K APGPDG A F
Sbjct: 359 LFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALF 418
Query: 1015 YKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYK 1074
++ YW +G + V F +G E T L LIPK +PT++ DLRPISLC+V YK
Sbjct: 419 FQHYWSTVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYK 478
Query: 1075 LITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTR-KTGGGLVALKI 1133
+I+K++ R +P L ++VS Q +F+ R DNI++A E++H++ + +A+K
Sbjct: 479 IISKIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKS 538
Query: 1134 DLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQ 1193
D+ KAYDRV W +LR+ L GF + V+ IM V + SVL N LQRGLRQ
Sbjct: 539 DMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQ 598
Query: 1194 GDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQ 1253
GDPLSP+LFVLC E L + EG ++ S++G + HL FADD L C+AS++Q
Sbjct: 599 GDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQ 658
Query: 1254 LRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPL 1313
+++ L + A+G +NL KS + F + V ++ + + +GI G YLGLP
Sbjct: 659 SLVLQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPE 718
Query: 1314 LQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVC 1373
K D + +++ +L W L++ G+ L KS+ ++PV AM LP + C
Sbjct: 719 CFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTC 778
Query: 1374 NHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLN 1433
+++ + + W ++R H +W+ + K G LG R + N+ALL K L+
Sbjct: 779 ENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLH 838
Query: 1434 EKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSS-SLW 1492
L + L +Y + L L S+ WR IL R+ +S G R+G G+S +W
Sbjct: 839 FPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVW 898
Query: 1493 YSNWLGTGKIASRIPFVHITDTTLTVADIW--RQGAWNFDRLYTL-LPQEIREEISSVQI 1549
W+ + I D TL V + R G W+ + L+ L LP++I + I
Sbjct: 899 IDPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDI---LRIKAI 955
Query: 1550 PSIQTGEDRILWREASDDIYSASSAYQFLNE----------DGLPET-GFWKLIWKASAP 1598
+ + D +W+ +S SAY + P T G +W
Sbjct: 956 KPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSMQPSTLGLKTQVWNLQTD 1015
Query: 1599 EKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCPGS--VWVRGQ 1656
K++ FLW V CG + E H L CP S +W
Sbjct: 1016 PKIKIFLWKV------------------------CGELGESTNHTLFLCPLSRQIWALSD 1051
Query: 1657 LGRLLPWISDSATFRHWLFGH-LQNRDN--------TLFCAMAWNLWKWRNSFVFEQVPW 1707
S+ + + + H L+N+DN +F + W +WK RNSF+FE + +
Sbjct: 1052 YPFPPDGFSNGSIYSN--INHLLENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGISY 1109
Query: 1708 QPGDVMRRIHLDTVEFHR---LAQGTQRSNPIASDGINSVMLYTDGSW 1752
D + +I D VE+ L NP S+G++ V ++ W
Sbjct: 1110 PATDTVIKIRDDVVEWFEAQCLDGEGSALNPPLSNGVHFVGSVSENLW 1157
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 454 bits (1169), Expect = e-127
Identities = 299/1037 (28%), Positives = 484/1037 (45%), Gaps = 57/1037 (5%)
Query: 715 NMLNMLEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLAR 774
N NM+ CN DL G+ ++W + + LDR + W+ FP E L
Sbjct: 521 NFTNMINCCNMKDLKSKGNPYSWVGK-RQNETIESCLDRVFINSDWQASFPAFETEFLPI 579
Query: 775 VYSDHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRA----QDGNLQDKLQ 830
SDH+P+++ + + FR+ F V W G +KL
Sbjct: 580 AGSDHAPVIIDIAEEVCTKRGQ-FRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLH 638
Query: 831 RVQEAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQ 890
++ ++ + N + ++ R+ +++H +++ RL +DL + Y D
Sbjct: 639 CCRQELAKWKRRTKTNTAEKIETLKYRVDAAERDHTL-PHQTILRLRQDLNQAYRD---- 693
Query: 891 EEMLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKR 950
EE+ W KSR W+ GDRNT FF+A T +R+ RN+I + G T+ + A+
Sbjct: 694 EELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAEN 753
Query: 951 FYTNLFSLDVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGF 1010
++ +LF+ I+ P + + +L+ V+ +EVR A+ ++ + +APG DGF
Sbjct: 754 YFADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGF 813
Query: 1011 HAYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCN 1070
A FY W ++G D+ MV F++ + ++ T + LIPK+ +P + D RPISLC
Sbjct: 814 TAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCT 873
Query: 1071 VSYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKT-GGGLV 1129
SYK+I+K+L+ R + L ++S Q +F+ G+ DN+++A E++H++ +R+ G V
Sbjct: 874 ASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYV 933
Query: 1130 ALKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQR 1189
A+K D+ KAYDRV W+FL + GF PR V IM V + + VL NGS R
Sbjct: 934 AVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSR 993
Query: 1190 GLRQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQA 1249
G+RQGDPLSPYLF+ C E L+ ++ + ++++KD + ISHL FADD L FC+A
Sbjct: 994 GIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRA 1053
Query: 1250 SKDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYL 1309
S + + + EASG K+N KS ++F + + R++ L L+GI GKYL
Sbjct: 1054 SNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYL 1113
Query: 1310 GLPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLP 1369
GLP GR K + F I+ KV R W N L+ AG+ + K+I +LPV++M LP
Sbjct: 1114 GLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLP 1173
Query: 1370 DSVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVH 1429
+CN ++ ++ WGK + +G LG + + N ALL K
Sbjct: 1174 TLICNEINSLITAFWWGK------------------ENEGDLGFKDLHQFNRALLAKQAW 1215
Query: 1430 SFLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAG-S 1488
L L + Y + + L SY W I + + + G RLG G +
Sbjct: 1216 RILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQT 1275
Query: 1489 SSLWYSNWLGTGKIASRIPFVHITDTTLTVADIWRQGAWNFDRLY---TLLPQEIREEIS 1545
+ +W WL T + R I D + VAD+WR+ +D + L P++ ++++
Sbjct: 1276 TKIWEDPWLPT--LPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPED--QQLA 1331
Query: 1546 SVQIPSIQTGEDRILWREASDDIYSASSAYQFLNEDGLPE----------TGFWKLIWKA 1595
S D W + Y+ S Y L E + IW+
Sbjct: 1332 KSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIWRL 1391
Query: 1596 SAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCPGS--VWV 1653
K++ F+W AL T + ++ +C RC E H++ C + VW
Sbjct: 1392 KITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWR 1451
Query: 1654 RGQL---GRLLPWISDSATFRHWLFG----HLQNRDNTLFCAMAWNLWKWRNSFVFEQVP 1706
RL + R L G +L + + + W LWK RN ++F+Q+
Sbjct: 1452 SANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQLD 1511
Query: 1707 WQPGDVMRRIHLDTVEF 1723
P V ++ + E+
Sbjct: 1512 RFPWKVAQKAEQEATEW 1528
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 449 bits (1156), Expect = e-126
Identities = 308/1016 (30%), Positives = 474/1016 (46%), Gaps = 42/1016 (4%)
Query: 718 NMLEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYS 777
+ML C+ +LG G+ FTW N + K LDR G+ AW FP A+ L + S
Sbjct: 140 HMLLNCSMHELGSTGNSFTWGGNRNDQWVQCK-LDRCFGNPAWFSIFPNAHQWFLEKFGS 198
Query: 778 DHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGNLQDKLQRVQEAAT 837
DH P+L++ + FR+ P V++ SW + + +
Sbjct: 199 DHRPVLVK-FTNDNELFRGQFRYDKRLDDDPYCIEVIHRSWNSA---MSQGTHSSFFSLI 254
Query: 838 EFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDS------ESLARLERDLQKEYGDILYQE 891
E + + H + R++ ++++ D S + ++ L YGD E
Sbjct: 255 ECRRAISVWKHSSDTNAQSRIKRLRKDLDAEKSIQIPCWPRIEYIKDQLSLAYGD----E 310
Query: 892 EMLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRF 951
E+ W QKSR+ W+ GD+NT FFHA R +N++ L E+ T S + A F
Sbjct: 311 ELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDENDQEFTRNSDKGKIASSF 370
Query: 952 YTNLFSLDVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFH 1011
+ NLF+ + N +E + E L+ V+ EV +A+ S+ APGPDGF
Sbjct: 371 FENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFT 430
Query: 1012 AYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNV 1071
A F++Q+W ++ + + F+ G + T + LIPK+ +P ++ DLRPISLC+V
Sbjct: 431 ALFFQQHWDLVKHQILTEIFGFFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSV 490
Query: 1072 SYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTR-KTGGGLVA 1130
YK+I+K+L R + L +VS Q +F+ R DNI++A E++H++ T + +A
Sbjct: 491 LYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMA 550
Query: 1131 LKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRG 1190
K D+ KAYDRV W FL + GF + + IM V + + SVL NG RG
Sbjct: 551 FKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRG 610
Query: 1191 LRQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQAS 1250
+RQGDPLSP LFVLC E L + + GK ++ V ++HL FADD LL C+A+
Sbjct: 611 IRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKAT 670
Query: 1251 KDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLG 1310
K + + L+ + + SG +NL KS + F K V + + + GIS GKYLG
Sbjct: 671 KQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLG 730
Query: 1311 LPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPD 1370
LP KRD F I EK+ +RL W L++ G+ L KSI +LPV+ M LP
Sbjct: 731 LPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPK 790
Query: 1371 SVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHS 1430
++C + ++ + W R H ++W+ +T K +G G + + N+ALL K
Sbjct: 791 NLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWR 850
Query: 1431 FLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSSS 1490
L EKG L+ + +Y + L+ SY WR IL R+ + G +G G +
Sbjct: 851 VLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKT 910
Query: 1491 -LWYSNWLGTG---KIASRIPFVHITDTTLTVADIWRQGAWNFDRLYTLLPQEIREEISS 1546
+W WL G + +R F+++ + D + WN + L L P + EI
Sbjct: 911 FVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRN-WNLNMLRDLFPWK-DVEIIL 968
Query: 1547 VQIPSIQTGEDRILWREASDDIYSASSAYQFLNED-----------GLPETGFWKLIWKA 1595
Q P + ED W + + +YS + Y+FL++ + IW
Sbjct: 969 KQRP-LFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNL 1027
Query: 1596 SAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCP--GSVWV 1653
K+R FLW A+P + + + C+ C E H+L CP VW
Sbjct: 1028 HTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWA 1087
Query: 1654 RGQLGRLLPWISDSA-TFRHWLFGHLQNRD---NTLFCA--MAWNLWKWRNSFVFE 1703
L S+S T L Q D + F + + W LWK RN+ +FE
Sbjct: 1088 ITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFE 1143
>At4g10830 putative protein
Length = 1294
Score = 442 bits (1136), Expect = e-123
Identities = 271/777 (34%), Positives = 398/777 (50%), Gaps = 11/777 (1%)
Query: 718 NMLEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYS 777
NM+ C+ D+ +G +F+W + V LDRA + FP A +E L S
Sbjct: 523 NMVSTCDLKDIRSIGDRFSWVGERHSH-TVKCCLDRAFINSEGAFLFPFAELEFLEFTGS 581
Query: 778 DHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWR----AQDGNLQDKLQRVQ 833
DH PL L T R RPFRF + P F++ V W Q +L D+++ +
Sbjct: 582 DHKPLFLSLEK-TETRKMRPFRFDKRLLEVPHFKTYVKAGWNKAINGQRKHLPDQVRTCR 640
Query: 834 EAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEM 893
+A + N R +++ L + + +++ ++R+L Y D EE
Sbjct: 641 QAMAKLKHKSNLNSRIRINQLQAALDKAMSSVNRTERRTISHIQRELTVAYRD----EER 696
Query: 894 LWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYT 953
W QKSR W++ GDRNT+FFHA T R N++ + E+G + A+ F+T
Sbjct: 697 YWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFT 756
Query: 954 NLFSLDVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAY 1013
++ + + P + + D L +S E+ +AI + KAPGPDG A
Sbjct: 757 KVYESNGRPVSIIDFAGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTAR 816
Query: 1014 FYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSY 1073
FYK W I+G D+ V F+ + T + +IPK+ NP L D RPI+LCNV Y
Sbjct: 817 FYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLY 876
Query: 1074 KLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRK-TGGGLVALK 1132
K+I+K LV R + L +VS Q +FI GR DN+++A E+MH++ TRK +A+K
Sbjct: 877 KIISKCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVK 936
Query: 1133 IDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLR 1192
D+ KAYDRV W+FL T+ FGF + IM V++ SVL NG + QRG+R
Sbjct: 937 TDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIR 996
Query: 1193 QGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKD 1252
QGDPLSPYLF+LC + L I+N V EG R +R+ G++HL FADD L FCQ++
Sbjct: 997 QGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVR 1056
Query: 1253 QLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLP 1312
+ +K + SG K+N+ KS + F V Q L ++GI GKYLGLP
Sbjct: 1057 NCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLP 1116
Query: 1313 LLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSV 1372
GR KRD F IIE+V R +SW L+ AG+ + KS+ S+PV+AM LP ++
Sbjct: 1117 EQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNI 1176
Query: 1373 CNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFL 1432
+ ++ ++ N W K R +AWK + SK +G LG R K N+ALL K V +
Sbjct: 1177 VSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMI 1236
Query: 1433 NEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSS 1489
N L+ + + +Y + SIL + + SY W +L D + G +G G +
Sbjct: 1237 NNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKT 1293
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 437 bits (1124), Expect = e-122
Identities = 288/943 (30%), Positives = 463/943 (48%), Gaps = 33/943 (3%)
Query: 727 DLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDHSPLLLRC 786
DL + G+ F+W R + V +RLDRA+ + +W FP E+L SDH PL++
Sbjct: 69 DLKYSGNPFSW-RGMRYDWFVRQRLDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFV 127
Query: 787 HAPTGDRAARPFRFQAAWVSHPSFESVVNTSW-RAQDGNLQDKLQRVQEAATEFNKTVFG 845
R + FRF + +++ +W A D ++ K+ + + + +
Sbjct: 128 DEARVKRRGQ-FRFDNRLRDNDVVNALIQETWTNAGDASVLTKMNQCRREIINWTRLQNL 186
Query: 846 N----IHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEMLWFQKSRE 901
N I + ++ +E L D + ++ L L+ Y EE W Q+SR
Sbjct: 187 NSAELIEKTQKALEEALTA-----DPPNPTTIGALTATLEHAYK----LEEQFWKQRSRV 237
Query: 902 NWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCT--DPSTLQEEAKRFYTNLFSLD 959
W+ GDRNT +FHA T RR +N++ +ED N + + + ++ +F+ +
Sbjct: 238 LWLHSGDRNTGYFHAVTRNRRTQNRL--TVMEDINGVAQHEEHQISQIISGYFQQIFTSE 295
Query: 960 VQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYKQYW 1019
+ + E P + + D L + EEV+ A+ S+ + KAPGPDGF A FY YW
Sbjct: 296 SDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYW 355
Query: 1020 HILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKLITKV 1079
HI+ D+ + F + + T + LIPK P K+ D RPI+LCN+ YK++ K+
Sbjct: 356 HIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKI 415
Query: 1080 LVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKTGGGL-VALKIDLEKA 1138
+ R + +L KL+S Q +F+ GR DN+++ EV+H + T +A+K D+ KA
Sbjct: 416 MTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKA 475
Query: 1139 YDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQGDPLS 1198
YDRV WDFL+ L FGF +D ++ V + + S L NG+ RGLRQGDPLS
Sbjct: 476 YDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLS 535
Query: 1199 PYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQLRLIK 1258
P LF+LC E L+ + VRVS +G ++HL FADD + F ++ + +
Sbjct: 536 PCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLS 595
Query: 1259 HTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLLQGRV 1318
L+ + +ASG +N KS + FS + + ++ ++ I + GKYLGLP GR
Sbjct: 596 EILSRYGKASGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRR 655
Query: 1319 KRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCNHVDK 1378
KRD F II+K+ + SW + L++AG+ + K++L+S+P+++M LP ++C +
Sbjct: 656 KRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQS 715
Query: 1379 MVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNEKGKL 1438
++ W + R VAW +T K G LG R + N++LL KL LN L
Sbjct: 716 LLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESL 775
Query: 1439 WVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSS-SLWYSNWL 1497
+ L KY S S + +L S+ WR I+ R+ + +G G + G S+W WL
Sbjct: 776 LSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWL 835
Query: 1498 GTGKIASRIPFVHITDTTLTVADIWRQGA--WNFDRLYTLLPQEIREEISSVQIPSIQTG 1555
K I L V+ + Q W+++++ +LP I + PS G
Sbjct: 836 SISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILP-NYENLIKQLPAPS-SRG 893
Query: 1556 EDRILWREASDDIYSASSAYQFLNEDG--LPETGF-WKL-IWKASAPEKVRFFLWLVGRD 1611
D++ W Y++ S Y + +P+T F W+ +WK K++ +W +
Sbjct: 894 VDKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQFNWQSNLWKLQTLPKIKHLMWKAAME 953
Query: 1612 ALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRC--PGSVW 1652
ALP + R H++ +A+C RCGA E H+ C VW
Sbjct: 954 ALPVGIQLVRRHISPSAACHRCGA-PESTTHLFFHCEFAAQVW 995
>At3g31420 hypothetical protein
Length = 1491
Score = 422 bits (1085), Expect = e-118
Identities = 298/1052 (28%), Positives = 465/1052 (43%), Gaps = 106/1052 (10%)
Query: 718 NMLEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYS 777
NM+ CNF DL +G +F+W + G V LDR + + W FPE+ + S
Sbjct: 343 NMVRGCNFTDLKSVGDRFSWAGK-RGDHHVTCSLDRTMANNEWHTLFPESETVFMEYGES 401
Query: 778 DHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGN------LQDKLQR 831
DH PL+ A +R F + + F+ VV W ++G+ L KL
Sbjct: 402 DHRPLVTNISAQKEERRGF-FSYDSRLTHKEGFKQVVLNQWHRRNGSFEGDSSLNRKLVE 460
Query: 832 VQEAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQE 891
++A + + K N R + + +L E ++ +DL + Y D E
Sbjct: 461 CRQAISRWKKNNRVNAEERIKIIRHKLDRAIATGTATPRER-RQMRQDLNQAYAD----E 515
Query: 892 EMLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRF 951
E+ W KSR W+ GDRNT++FH+ T RR RN++ + DG+ C + + A +
Sbjct: 516 EIYWQTKSRSRWLNAGDRNTRYFHSTTKTRRCRNRLLSVQDSDGDICRGDENIAKVAINY 575
Query: 952 YTNLFSL--DVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDG 1009
+ +L+ + +R + + I E + L+ PV+ E+ ++ S+ + P PDG
Sbjct: 576 FDDLYKSTPNTSLRYADVFQGFQQKITDEINEDLIRPVTELEIEESVFSVAPSRTPDPDG 635
Query: 1010 FHAYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLC 1069
F A FY+Q+W + + + V F+ + T L LIPKV+ PT + RPI+LC
Sbjct: 636 FTADFYQQFWPDIKQKVIDEVTRFFERSELDERHNHTNLCLIPKVETPTTIAKFRPIALC 695
Query: 1070 NVSYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKT-GGGL 1128
NVSYK+I+K+LVNR + L ++ Q +F+ GR +N I+A EV + + RK
Sbjct: 696 NVSYKIISKILVNRLKKHLGGAITENQAAFVPGRLITNNAIIAHEVYYALKARKRQANSY 755
Query: 1129 VALKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQ 1188
+ALK D+ KAYDR+ WDFL T+ GF + ++ IM V SVL NGS + +
Sbjct: 756 MALKTDITKAYDRLEWDFLEETMRQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPE 815
Query: 1189 RGLRQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQ 1248
RG+R GDPLSPYLF+LC E L+ I+ K + +R+S G ISHL FADD + F
Sbjct: 816 RGIRHGDPLSPYLFILCAEVLSHMIKQAEINKKLKGIRLSTQGPFISHLLFADDSIFFTL 875
Query: 1249 ASKDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKY 1308
A++ IK +R + L+GI GKY
Sbjct: 876 ANQRSCTAIKEP---------------------------DTKRRMRHLLGIHNEGGEGKY 908
Query: 1309 LGLPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWL 1368
LGLP + K++ F IIEKV + W L++ G+ L K++ ++PV++M L
Sbjct: 909 LGLPEQFNKKKKELFNYIIEKVKDKTQGWSKKFLSQGGKEVLLKAVALAMPVYSMNIFKL 968
Query: 1369 PDSVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLV 1428
VC +D ++ W G + H WK ++ K +G LG + N ALLGK
Sbjct: 969 TKEVCEEIDSLLARFWWSSGNETKGMHWFTWKRMSIPKKEGGLGFKELENFNLALLGKQT 1028
Query: 1429 HSFLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGS 1488
L L + L +Y +++ S+VW+ IL R+ + G +G GS
Sbjct: 1029 WHLLQHPNCLMARVLRGRYFPETNVMNAVQGRRASFVWKSILHGRNLLKKGLRCCVGDGS 1088
Query: 1489 -SSLWYSNWLGTGKIASRIPFVHITDTTLTVADIWRQGAWNFDRLYTLLPQEIREEISSV 1547
+ W WL + R P+ ++E +
Sbjct: 1089 LINAWLDPWLPLH--SPRAPY--------------------------------KQEDAPE 1114
Query: 1548 QIPSIQTGEDRIL-WREASDDIYSASSAYQFLNEDGLPET----------GFWKLIWKAS 1596
Q+ T D ++ W D +Y+ SAY LP T +L+WK
Sbjct: 1115 QLLVCSTARDDLIGWHYTKDGMYTVKSAYWLATH--LPGTTGTHPPPGDIKLKQLLWKTK 1172
Query: 1597 APEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRC--PGSVWVR 1654
K++ F W + A+ T H+ + C RC E ++H+ C + W
Sbjct: 1173 TAPKIKHFCWKILSGAIATGEMLRYRHINKQSICKRCCRDEETSQHLFFECDYAKATWRG 1232
Query: 1655 GQLGRLLPWISDSATFRHWLFGHL-------QNRDNTLFCAMAWNLWKWRNSFVFEQ--V 1705
L L+ DS F + N L + W LW+ RN F+Q +
Sbjct: 1233 AGLPNLI--FQDSIVTLEEKFRAMFTFNPSTTNYWRQLPFWILWRLWRSRNILTFQQKHI 1290
Query: 1706 PWQPGDVMRRIHLDTVEFHRLAQGTQRSNPIA 1737
PW+ ++ D +E+ + Q NP++
Sbjct: 1291 PWEV--TVQLAKQDALEWQDIEDRVQVINPLS 1320
>At2g11240 pseudogene
Length = 1044
Score = 397 bits (1020), Expect = e-110
Identities = 248/842 (29%), Positives = 420/842 (49%), Gaps = 30/842 (3%)
Query: 723 CNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDHSPL 782
C+ DL G+ +W + + V RLDRAL + AW +P + +L SDH PL
Sbjct: 4 CDLYDLRHSGNFLSWRGKRHDH-VVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDHRPL 62
Query: 783 LLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGNLQDKLQRVQEAATEFNKT 842
L + FR+ ++ ++V +W D ++ + +++ E K
Sbjct: 63 LTHFDLSKKKKKG-VFRYDRRLKNNDEVTALVQEAWNLYDTDIVE--EKISRCRLEIVKW 119
Query: 843 VFGNIHRRKRRVERRLQGIQQEHDWRD--SESLARLERDLQKEYGDILYQEEMLWFQKSR 900
++ +E Q +++ +D E L+ + +L Y EE W Q+SR
Sbjct: 120 SRAKQQSSQKLIEENRQKLEEAMSSQDHNQELLSTINTNLLLAYK----AEEEYWKQRSR 175
Query: 901 ENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNLFSLDV 960
+ W+ GD+N+ +FHA T R NK + EDG + + + ++ LFS +
Sbjct: 176 QLWLALGDKNSGYFHAITRGRTVINKFSVIEKEDGVPEYEEAGILNVISEYFQKLFSANE 235
Query: 961 QVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYKQYWH 1020
R I E P I E+ EE++SA S+ + KAPGPDGF A F++ W
Sbjct: 236 GARAATIKEAIKPFISPEQNP--------EEIKSACFSIHADKAPGPDGFSASFFQSNWM 287
Query: 1021 ILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKLITKVL 1080
+G ++ + S F + P + T + LIPK+ + ++ D RPI+LC V YK+I+K+L
Sbjct: 288 TVGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLL 347
Query: 1081 VNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKTGGG----LVALKIDLE 1136
R +P+L +++S Q +F+ R + DN+++ E +H + K+ G +A+K ++
Sbjct: 348 SRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYL---KSLGAEKRCFMAVKTNMS 404
Query: 1137 KAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQGDP 1196
KAYDR+ WDF++ + + GF + I+ + T + S L NGS + +RGLRQGDP
Sbjct: 405 KAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDP 464
Query: 1197 LSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQLRL 1256
LSP+LF++C E L+ + +G +RVSK ++HL FADD + FC++ +
Sbjct: 465 LSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKT 524
Query: 1257 IKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLLQG 1316
L + EASG +N KS + FS+ + E ++GI LGKYLGLP + G
Sbjct: 525 FLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFG 584
Query: 1317 RVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCNHV 1376
R KRD F I++++ R SW + L+ AG+ + KS+L+S+P + M L S+C +
Sbjct: 585 RKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRI 644
Query: 1377 DKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNEKG 1436
+ + W + + +AW + ++K +G LG + N+ALL KL +
Sbjct: 645 QSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPS 704
Query: 1437 KLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSSSL-WYSN 1495
+ V+ L KY ++ S L + S+ WRGI +D + G +G+G +L W
Sbjct: 705 CVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEP 764
Query: 1496 WLGTGKIASRIPFVHITDTTLTVADIWRQ--GAWNFDRLYTLLPQEIREEISSVQIPSIQ 1553
WL ++ + ++TVA + Q +W+ ++++ L P + + + +I S++
Sbjct: 765 WLSLSTSSTPMGPALEQFKSMTVAQLICQTTKSWDREKVWDLSP--FKTTLQASRITSMK 822
Query: 1554 TG 1555
G
Sbjct: 823 QG 824
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 388 bits (996), Expect = e-107
Identities = 268/890 (30%), Positives = 415/890 (46%), Gaps = 54/890 (6%)
Query: 862 QQEHDWRDSESLARLERDLQKE-----------------YGDILYQEEMLWFQKSRENWV 904
++E+D+ + +L R+L KE GD +EE W KSR+ W+
Sbjct: 15 KRENDFNAKSRITKLRRELDKEKSATFPSWTQISLLQDVLGDAYREEEDFWRLKSRDKWM 74
Query: 905 RFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNLFSLDVQVRR 964
GD+N+KFF A R N + L E+GN T + A F+ +LFS
Sbjct: 75 VGGDKNSKFFQATVKANRVSNSLRFLVDENGNEQTVNREKGKIAVTFFEDLFSSSYPSSM 134
Query: 965 NRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYKQYWHILGE 1024
+ ++E + + L V+ +E+ A+ S+ + APGPDGF A F+++ W ++
Sbjct: 135 DSVLEGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQRQWPLVKN 194
Query: 1025 DLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKLITKVLVNRF 1084
+ + FQ G + T L LIPK+ P ++ D+RPISLC+V YK+I+K+L R
Sbjct: 195 QIISDIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARL 254
Query: 1085 RPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTR-KTGGGLVALKIDLEKAYDRVN 1143
+ L +VSP Q +F+ R DNIILA E++H + T K + K D+ KAYDRV
Sbjct: 255 KKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVE 314
Query: 1144 WDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQGDPLSPYLFV 1203
W FL+ L GF ++ +M V + + SVL NG RGLRQGDPLSP+LFV
Sbjct: 315 WPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFV 374
Query: 1204 LCMERLAIQIQNLVEE-GKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQLRLIKHTLA 1262
LC E L I I N E+ GK ++ + G ++HL FADD LL C+AS+ + I H L+
Sbjct: 375 LCTEAL-IHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLS 433
Query: 1263 DFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLLQGRVKRDH 1322
+ SG +N EKS + F V + ++ + GI GKYLGLP K+
Sbjct: 434 QYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVL 493
Query: 1323 FATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCNHVDKMVRN 1382
F I EK+ +RL+ W L++ G+ L KSI + PV+AM L ++C + ++ +
Sbjct: 494 FGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMD 553
Query: 1383 CIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNEKGKLWVQA 1442
W + + H + + + K G G + + N+ALL K + L Q
Sbjct: 554 FWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQI 613
Query: 1443 LSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSSS-LWYSNWLGTGK 1501
L +Y + L+ SY W+ IL R+ + G +G G ++ +W NW+ K
Sbjct: 614 LKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDK 673
Query: 1502 IASRIPFVHITDTTLTVADIWRQGA--WNFDRLYTLLP-QEIREEISSVQIPSIQTGEDR 1558
+ D L V+ + + WN + L L P +EI +I Q P + + +D
Sbjct: 674 PRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEI--QIICQQRP-MASRQDS 730
Query: 1559 ILWREASDDIYSASSAYQFLN-----------EDGLPETGFWKLIWKASAPEKVRFFLWL 1607
W + +Y+ S Y + E+ + IW ++ K++ FLW
Sbjct: 731 FCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWK 790
Query: 1608 VGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCPGSVWVRGQLGRLLPWISDS 1667
V + A+ + + C C E H+L +CP + Q+ L P S +
Sbjct: 791 VLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCP----LARQVWALTPMQSPN 846
Query: 1668 ATFRHWLFGHLQ----NRDNTLFCA--------MAWNLWKWRNSFVFEQV 1705
F +F ++ N NT + W LWK RN +FE +
Sbjct: 847 HGFGDSIFTNVNHVIGNCHNTELSPHLRYVSPWIIWILWKNRNKRLFEGI 896
>At3g45550 putative protein
Length = 851
Score = 381 bits (979), Expect = e-105
Identities = 262/819 (31%), Positives = 393/819 (46%), Gaps = 54/819 (6%)
Query: 948 AKRFYTNLFSLD-VQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPG 1006
A++F+T++F+ + +QV + + ++ +L E+ AI + KAPG
Sbjct: 10 AQKFFTDIFTTNGIQVSPIDFADFPS-SVTNIINSELTQDFRDSEIFEAICQIGDDKAPG 68
Query: 1007 PDGFHAYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPI 1066
PDG A FYKQ W I+G D+ V F++ + T + +IPK+ NP L D RPI
Sbjct: 69 PDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPI 128
Query: 1067 SLCNVSYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRK-TG 1125
+LCNV YK+I+K +VNR + L+ +VS Q +FI GR DN+++A E+MH++ RK
Sbjct: 129 ALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVS 188
Query: 1126 GGLVALKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSF 1185
+A+K D+ KAYDRV WDFL T+ FGF + + IM V++ SVL NGS
Sbjct: 189 KTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYI 248
Query: 1186 PLQRGLRQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLL 1245
RG+RQGDPLSPYLF+LC + L+ I+ G R VR+ I+HL FADD L
Sbjct: 249 SPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLF 308
Query: 1246 FCQASKDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNL 1305
FCQA+ + +K + SG K+N++KS + F V Q L L+ I
Sbjct: 309 FCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGG 368
Query: 1306 GKYLGLPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQS 1365
GKYLGLP GR K++ F II++V R ASW L+ AG+ L KS+ ++PV+AM
Sbjct: 369 GKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSC 428
Query: 1366 LWLPDSVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLG 1425
LP + + ++ ++ N W K N R VAWK + SK +G LG R K N+ALL
Sbjct: 429 FKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLA 488
Query: 1426 KLVHSFLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLG 1485
K + L+ + + +Y K SI+ + R SY W +L + G +G
Sbjct: 489 KQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIG 548
Query: 1486 AGSSSLWYSNWLGTGKIA-SRIPFVHITD---TTLTVADIWR----QGAWNFDRLYTLLP 1537
G + LG + S P +TD L++ ++++ W+ +L T +
Sbjct: 549 DGKTIR-----LGIDNVVDSHPPRPLLTDEQHNGLSLDNLFQHRGHSRCWDNAKLQTFVD 603
Query: 1538 QEIREEISSVQIPSIQTGEDRILWREASDDIYSASSAYQFLNED---GLP-------ETG 1587
Q + I + + S ++ DR++W S Y+ S Y D +P
Sbjct: 604 QSDHDYIKRIYL-STRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVD 662
Query: 1588 FWKLIWKASAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRC 1647
IW K++ FLW + ALPT + + C RC E H L C
Sbjct: 663 LKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTC 722
Query: 1648 PGSVWVRGQLGRLLPW-ISDSATFRHWLFGH------------LQNRDNT-----LFCAM 1689
P + + W +SD+ +R + + LQN T + +
Sbjct: 723 PFAT---------MAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLIPFWL 773
Query: 1690 AWNLWKWRNSFVFEQVPWQPGDVMRRIHLDTVEFHRLAQ 1728
W +WK RN+ VF + P + R +T E+ Q
Sbjct: 774 LWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQ 812
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 379 bits (974), Expect = e-105
Identities = 289/1023 (28%), Positives = 447/1023 (43%), Gaps = 67/1023 (6%)
Query: 718 NMLEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYS 777
NML C+ +G G+ FTW N + K LDR G+ W F ++ L ++ S
Sbjct: 125 NMLLNCDMHQMGSSGNSFTWGGTRNDQWIQCK-LDRCFGNSEWFTMFSNSHQWFLEKLGS 183
Query: 778 DHSPLLLRCHAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDGNLQDKLQRVQEAAT 837
H P+L+ + F + + P + +SW GN +
Sbjct: 184 HHRPVLVN-FVNDQEVFRGQFCYDKRFAEDPQCAASTLSSWI---GNGISDVSSSMLRMV 239
Query: 838 EFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERD--LQKEYGDILYQEEMLW 895
+ K + G + R+ ++ E D S+ R +Q + G +EE W
Sbjct: 240 KCRKAISGWKKNSDFNAQNRILRLRSELDEEKSKQYPCWSRISVIQTQLGVAFREEESFW 299
Query: 896 FQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNL 955
KS++ W+ GDRN+KFF A R +N + L E+GN T A ++ NL
Sbjct: 300 RLKSKDKWLFGGDRNSKFFQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENL 359
Query: 956 FSLDVQVRRNRIMENQTPTIPMEERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFY 1015
F ++ + E +L V+ E+ SA+ S+ AP +
Sbjct: 360 FMSSYPANSQSALDGFKTRVSEEMNQELTQAVTELEIHSAVFSINVESAP--EKLECCQG 417
Query: 1016 KQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCNVSYKL 1075
Y ILG F+ G E T L LIPK NP ++ D+RPISLC+V YK+
Sbjct: 418 SDYIEILG---------FFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKI 468
Query: 1076 ITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTR-KTGGGLVALKID 1134
I+K+L + + L +VSP Q +F R DNI++A E++H++ T K + K D
Sbjct: 469 ISKILSFKLKKHLPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTD 528
Query: 1135 LEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGLRQG 1194
+ KAYDRV W FL+ L GF + + IM V + SVL NG +RG+RQG
Sbjct: 529 MSKAYDRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQG 588
Query: 1195 DPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASKDQL 1254
DP+SP+LFVLC E L +Q K ++ + G ++HL F DD L C+A+K
Sbjct: 589 DPISPFLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDC 648
Query: 1255 RLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGLPLL 1314
+ L+ + SG +N+EKS + F V + +R + GI GKYLGLP
Sbjct: 649 EQMMLCLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPEN 708
Query: 1315 QGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDSVCN 1374
K+D F I EK+ + L+ W + L++ G+ L KSI +LPV+ M LP +C
Sbjct: 709 LSGSKQDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCT 768
Query: 1375 HVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSFLNE 1434
+ ++ + W + H + K +T K+ G G + + N+ALL K ++
Sbjct: 769 KLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSD 828
Query: 1435 KGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAG-SSSLWY 1493
+ Q +Y + L SY WR IL R+ ++ G +G G +++W
Sbjct: 829 SKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWI 888
Query: 1494 SNWLGTGKIASRIPF-------VHITDTTLTVADIWRQGAWNFDRLYTLLPQEIREEISS 1546
WL G SR P +H+ + L + + R WN +L T L E ++
Sbjct: 889 DKWLFDGH--SRRPMNLHSLMNIHMKVSHL-IDPLTRN--WNLKKL-TELFHEKDVQLIM 942
Query: 1547 VQIPSIQTGEDRILWREASDDIYSASSAYQ----------FLNEDGLPETG-FWKLIWKA 1595
Q P I + ED W ++ +Y+ S Y+ F D P + +W
Sbjct: 943 HQRPLI-SSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSL 1001
Query: 1596 SAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCP--GSVWV 1653
K++ F+W + AL + + T C+ C +E H+L +CP VW
Sbjct: 1002 ETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWA 1061
Query: 1654 RGQLGRLLPWISDSAT-FRHWLFGH----LQNRDN--------TLFCAMAWNLWKWRNSF 1700
L I AT F +F + +QN N T+ + W +WK RN
Sbjct: 1062 -------LSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKT 1114
Query: 1701 VFE 1703
+F+
Sbjct: 1115 LFQ 1117
>At1g25430 hypothetical protein
Length = 1213
Score = 358 bits (918), Expect = 2e-98
Identities = 272/1037 (26%), Positives = 463/1037 (44%), Gaps = 62/1037 (5%)
Query: 720 LEACNFIDLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDH 779
L A DL + G+ FTW + + VAK++DR L + +W FP + + +SDH
Sbjct: 173 LLAAELSDLRYKGNTFTWWNKSH-TTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDH 231
Query: 780 SPLLLRCHA---PTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDG------NLQDKLQ 830
+ C T +A RPF+F + + F ++V +W + + KL+
Sbjct: 232 ----VSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLK 287
Query: 831 RVQEAATEFNKTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQ 890
+++ +F++ + + +R + L G Q + A E + ++++ +
Sbjct: 288 ALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERKWHILTAA 347
Query: 891 EEMLWFQKSRENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKR 950
EE + QKSR +W GD NTK+FH R N I L+ +G + +
Sbjct: 348 EESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCAS 407
Query: 951 FYTNLFSLDVQVRRNRIMENQTPTIPMEERD------KLVAPVSLEEVRSAIMSMKSFKA 1004
++ +L +V +ME + + R +L + S E++R+A+ S+ K+
Sbjct: 408 YFGSLLGDEVDPY---LMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKS 464
Query: 1005 PGPDGFHAYFYKQYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLR 1064
GPDGF A F+ W I+G ++ + F +G + AT +VLIPK+ NPT D R
Sbjct: 465 CGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFR 524
Query: 1065 PISLCNVSYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIH-TRK 1123
PIS N YK+I ++L +R + LL ++S Q +F+ GR +N++LA +++H + +
Sbjct: 525 PISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNI 584
Query: 1124 TGGGLVALKIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLP 1183
+ G+ LK+DL+KA+D V W+F+ A L P + ++ I + TP +V NG
Sbjct: 585 SPRGM--LKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGG 642
Query: 1184 SFPLQRGLRQGDPLSPYLFVLCMERLAIQIQNLVEEG--KWRPVRVSKDGVGISHLFFAD 1241
F +GLRQGDPLSPYLFVL ME + + + E G + P + ISHL FAD
Sbjct: 643 FFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHP---KASNLSISHLMFAD 699
Query: 1242 DVLLFCQASKDQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISR 1301
DV++F L I TL DF SG+KVN +KS + + + + + + G
Sbjct: 700 DVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGL--NQLESNANAAYGFPI 757
Query: 1302 ASNLGKYLGLPLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVH 1361
+ +YLGLPL+ +++ + ++EK+ R SW N L+ AGR+ L S++
Sbjct: 758 GTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINF 817
Query: 1362 AMQSLWLPDSVCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNE 1421
M + LP ++ + +W V+W + K++G LGLR + N+
Sbjct: 818 WMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNK 877
Query: 1422 ALLGKLVHSFLNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFG 1481
L +L+ K LW ++ GS E S+ W+ +L R
Sbjct: 878 TLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLV 937
Query: 1482 PRLGAG-SSSLWYSNWLGTGKIASRI----PFVHITDTTLTVADIWRQGAWNFDRLYTLL 1536
++G G + WY NW G + I P VA + + W +
Sbjct: 938 CKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAP 997
Query: 1537 PQEIREEISSVQIPS-IQTGEDRILWREAS--DDIYSASSAYQFLNEDGLPETGFWKLIW 1593
+ I + + +V +PS Q DR W +SA+ ++ + ++ + IW
Sbjct: 998 AKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQGFSAAKTWEAIRPKATVKS-WASSIW 1056
Query: 1594 KASAPEKVRFFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCPGS--V 1651
A K F +W+ + L T + + +C+ C E +H+L C S V
Sbjct: 1057 FKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQV 1116
Query: 1652 W------------VRGQLGRLLPWISDSATFRHWLFGHLQNRDNTLFCAMAWNLWKWRNS 1699
W + LL W+ S+ L + ++ + +NLW+ RN+
Sbjct: 1117 WRLVFRRICPRQRLFSSWSELLSWVRQSSPEAPPLLRKIVSQ------VVVYNLWRQRNN 1170
Query: 1700 FVFEQVPWQPGDVMRRI 1716
+ + P + + +
Sbjct: 1171 LLHNSLRLAPAVIFKLV 1187
>At1g31100 hypothetical protein
Length = 1090
Score = 345 bits (885), Expect = 1e-94
Identities = 281/1026 (27%), Positives = 451/1026 (43%), Gaps = 88/1026 (8%)
Query: 727 DLGFMGSKFTWERRVNGRRAVAKRLDRALGDVAWRLCFPEAYVEHLARVYSDHSPLLLRC 786
DL F G+ FTW + + R VAK+LDR L + +W FP AY +SDH+ +
Sbjct: 91 DLVFKGNTFTWWNK-SATRPVAKKLDRILVNESWCSRFPSAYAVFGEPDFSDHASCGVII 149
Query: 787 HAPTGDRAARPFRFQAAWVSHPSFESVVNTSWRAQDG------NLQDKLQRVQEAATEFN 840
+ P R RPFRF + +P F S+V W + + + KL+ ++ F+
Sbjct: 150 N-PLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSSMFKMSKKLKALKNPIRTFS 208
Query: 841 KTVFGNIHRRKRRVERRLQGIQQEHDWRDSESLARLERDLQKEYGDILYQEEMLWFQKSR 900
F N+ +R + + Q + + A LE + Q+++ ++ EE + Q+SR
Sbjct: 209 MENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQRKWLILVKAEESFFCQRSR 268
Query: 901 ENWVRFGDRNTKFFHAQTVVRRKRNKIHGLFLEDGNWCTDPSTLQEEAKRFYTNLFSLDV 960
W+ GD NT +FH R+ N IH + ++G ++E +++NL +V
Sbjct: 269 VTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLGGEV 328
Query: 961 QVRRNRIMENQTPTIPM----EERDKLVAPVSLEEVRSAIMSMKSFKAPGPDGFHAYFYK 1016
I E+ +P +++ +L S ++++SA S S K GPDGF F+K
Sbjct: 329 GPPM-LIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFK 387
Query: 1017 QYWHILGEDLHHMVASAFQNGGANPELLATLLVLIPKVDNPTKLKDLRPISLCN-----V 1071
+ W ++G ++ V+ F + + AT LVLIPK+ N +K+ D RPIS CN
Sbjct: 388 ETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPIS-CNDFGPIT 446
Query: 1072 SYKLITKVLVNRFRPLLHKLVSPLQGSFILGRGTRDNIILAQEVMHTIHTRKTGGGLVAL 1131
YK+I ++L NR + LL +++SP Q +F+ GR +N++LA E++ + R+ L
Sbjct: 447 LYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLATELVQG-YNRQNIDPRGML 505
Query: 1132 KIDLEKAYDRVNWDFLRATLYDFGFPPRTVDLIMWGVRTPAVSVLWNGSKLPSFPLQRGL 1191
K+DL KA+D + WDF+ + L G P R V I + TP SV NG+ F RGL
Sbjct: 506 KVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGL 565
Query: 1192 RQGDPLSPYLFVLCMERLAIQIQNLVEEGKWRPVRVSKDGVGISHLFFADDVLLFCQASK 1251
RQG+PLSP+LFVL ME + + + + G + + ISHL FADD+++F
Sbjct: 566 RQGNPLSPFLFVLAMEVFSSLLNSRFQAG-YIHYHPKTSPLSISHLMFADDIMVFFDGGS 624
Query: 1252 DQLRLIKHTLADFCEASGMKVNLEKSRMLFSKVVGQRRQRELSGLVGISRASNLGKYLGL 1311
L I L DF SG+ +N EK+ + L+GL I AS + + L +
Sbjct: 625 SSLHGISEALEDFAFWSGLVLNREKTHLY------------LAGLDRI-EASTIARKLRI 671
Query: 1312 PLLQGRVKRDHFATIIEKVNTRLASWKNNLLNKAGRVCLAKSILSSLPVHAMQSLWLPDS 1371
+ ++EK+ R SW L+ AGRV L S++S + + + LP
Sbjct: 672 A---------EYGPLLEKLAKRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKG 722
Query: 1372 VCNHVDKMVRNCIWGKGGNARSWHLVAWKDVTQSKAKGRLGLRSARKNNEALLGKLVHSF 1431
++ + +W + + VAW +V K +G G +
Sbjct: 723 CVKRIEALCARFLWSGNIDVKKGAKVAWSEVCLPKEEGGSGY-----------------Y 765
Query: 1432 LNEKGKLWVQALSQKYIKSGSILTEELRPGGSYVWRGILKARDSVSDGFGPRLGAGSS-S 1490
+EK LW ++ S + S+ WR +L+ R LG G S
Sbjct: 766 FSEKESLWAAWHKFHNFRNKSFWEIDESATDSWTWRSLLRLRTVAGRFLFSVLGDGKKIS 825
Query: 1491 LWYSNWLGTGKI----ASRIPFVHITDTTLTVADIWRQGAWNFDRLYTLLPQEIREEISS 1546
W+ NW G + S P VAD W T + +++
Sbjct: 826 FWFDNWSPLGPLFKLFGSSGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHLTT 885
Query: 1547 VQIPSIQTGEDRILWREASDDI----YSASSAYQFLNEDGLPETGFWKLIWKASAPEKVR 1602
+ +P + D +W DD +SA+ ++ + P + K +W + K
Sbjct: 886 IALPCFDSSPDTFVW--IVDDFTCHGFSAARTWEAMRPK-KPVKDWTKSVWFKGSVPKHA 942
Query: 1603 FFLWLVGRDALPTNAKRHRHHLATTASCIRCGAVVEDAEHVLRRCPGS--VWVRGQLGRL 1660
F +W+ + LPT + + TT C C + E +H+L C S +W + RL
Sbjct: 943 FNMWVSHLNRLPTRQRLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIW-KLVFFRL 1001
Query: 1661 LPWISDSATFRHWLFGHLQNRDNTLFC----------AMAWNLWKWRNSFVFEQVPWQPG 1710
P A F W R N+ A ++LWK RN+ + + P
Sbjct: 1002 TP---SQAIFNSWAELLSWTRINSSKAPSLLRKIAAQASVFHLWKQRNNVLHNSIFISPA 1058
Query: 1711 DVMRRI 1716
V I
Sbjct: 1059 TVFHFI 1064
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.336 0.145 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,661,655
Number of Sequences: 26719
Number of extensions: 1690906
Number of successful extensions: 5864
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5332
Number of HSP's gapped (non-prelim): 186
length of query: 1904
length of database: 11,318,596
effective HSP length: 114
effective length of query: 1790
effective length of database: 8,272,630
effective search space: 14808007700
effective search space used: 14808007700
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0228a.4