BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0214.10
         (74 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g46290 eukaryotic translation initiation factor 3 delta subunit     74  1e-14
At2g46280 eukaryotic translation initiation factor 3 delta subunit     74  2e-14
At4g33630 unknown protein                                              27  2.4
At2g47790 unknown protein                                              26  4.1
At3g13300 unknown protein                                              25  9.2
At3g08020 unknown protein                                              25  9.2

>At2g46290 eukaryotic translation initiation factor 3 delta subunit
          Length = 355

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           VL GGQ ASAV+TTDH AG FEAKFYD ILQEE   VKGH G IN +AF  + + + S  
Sbjct: 277 VLGGGQDASAVTTTDHRAGKFEAKFYDTILQEEIGGVKGHFGPINALAFSPDGK-SFSSG 335

Query: 62  VSDGHVLVQFY 72
             DG+V +  +
Sbjct: 336 GEDGYVRLHHF 346


>At2g46280 eukaryotic translation initiation factor 3 delta subunit
          Length = 328

 Score = 73.6 bits (179), Expect = 2e-14
 Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 2   VLRGGQVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDP 61
           VL GGQ ASAV+TTDH AG FEAKFYD ILQEE   VKGH G IN +AF  + + + S  
Sbjct: 250 VLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGK-SFSSG 308

Query: 62  VSDGHVLVQFY 72
             DG+V +  +
Sbjct: 309 GEDGYVRLHHF 319


>At4g33630 unknown protein
          Length = 684

 Score = 26.6 bits (57), Expect = 2.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 7   QVASAVSTTDHHAGNFEAKFYDMILQEEFRDV-----KGHSGLINVMAFIMEE 54
           +VA A + T+   G   + FY  +L+E ++D      K  +GL+   + I E+
Sbjct: 153 KVAIAATATNDAVGKVMSTFYRALLEERYKDAVYLRDKAGAGLVGWWSGISED 205


>At2g47790 unknown protein
          Length = 392

 Score = 25.8 bits (55), Expect = 4.1
 Identities = 14/44 (31%), Positives = 21/44 (46%), Gaps = 7/44 (15%)

Query: 25  KFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDPVSDGHVL 68
           K Y  +  + + + KGHS  +N +AF        SD  +  HVL
Sbjct: 66  KLYSPVTGQYYGECKGHSDTVNQIAF-------SSDSAASPHVL 102


>At3g13300 unknown protein
          Length = 1326

 Score = 24.6 bits (52), Expect = 9.2
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 20  GNFEAKFYDMILQEEFRDVKGHSGLINVMAFIMEERPALSDPVSDGHVLV 69
           GN      +  L+  FR   GHS  +  MAF  E+   L+    DG V V
Sbjct: 218 GNIRVLNINTALRSLFR---GHSQRVTDMAFFAEDVDMLASVSLDGKVFV 264


>At3g08020 unknown protein
          Length = 764

 Score = 24.6 bits (52), Expect = 9.2
 Identities = 13/42 (30%), Positives = 21/42 (49%), Gaps = 1/42 (2%)

Query: 7   QVASAVSTTDHHAGNFEAKFYDMILQEEFRDVKGHSGLINVM 48
           Q A  V   + +A  FE+   D+   +   +  GHSG+ N+M
Sbjct: 107 QAAVTVEAAEDYARRFESGVNDLTSNDHAGEELGHSGM-NIM 147


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,567,415
Number of Sequences: 26719
Number of extensions: 48805
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 6
length of query: 74
length of database: 11,318,596
effective HSP length: 50
effective length of query: 24
effective length of database: 9,982,646
effective search space: 239583504
effective search space used: 239583504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)