BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0212.5
         (129 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g62180 putative adenosine-5'-phosphosulfate reductase               93  3e-20
At4g21990 PRH26                                                        91  1e-19
At4g04610 5'-adenylylsulfate reductase                                 90  3e-19
At3g27810 ATMYB3 (Atmyb3)                                              27  2.8
At5g40350 putative transcription factor MYB24                          26  6.3
At5g07980 putative protein                                             26  6.3
At1g25340 putative transcription factor MYB116 (MYB116)                25  8.3

>At1g62180 putative adenosine-5'-phosphosulfate reductase
          Length = 454

 Score = 93.2 bits (230), Expect = 3e-20
 Identities = 62/157 (39%), Positives = 77/157 (48%), Gaps = 50/157 (31%)

Query: 1   CCRVRKVRLLRRELKGVTT*IIGQ*KDQSPGT---------------------NLVKWNL 39
           CCRVRKVR LRR LKG+   I GQ KDQSPGT                     +LVKWN 
Sbjct: 194 CCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPIVQVDPVFEGLDGGVGSLVKWNP 253

Query: 40  VA-ISKAIIYGISLGP*MCL*IH*IRKDTFPLEAL----------------VLREQHERE 82
           +A +  A ++              +R    P+ AL                VL  QHERE
Sbjct: 254 LANVEGADVWNF------------LRTMDVPVNALHAQGYVSIGCEPCTRPVLPGQHERE 301

Query: 83  GNRWWEDAKAKDCGLHKGNVKQDVGAQLNGNGAAMQV 119
           G  WWEDAKAK+CGLHKGN+K++ GA  +   A  ++
Sbjct: 302 GRWWWEDAKAKECGLHKGNIKEEDGAADSKPAAVQEI 338


>At4g21990 PRH26
          Length = 458

 Score = 91.3 bits (225), Expect = 1e-19
 Identities = 62/145 (42%), Positives = 75/145 (50%), Gaps = 30/145 (20%)

Query: 1   CCRVRKVRLLRRELKGVTT*IIGQ*KDQSPGT---------------------NLVKWNL 39
           CCR+RKVR LRR LKG+   I GQ KDQSPGT                     +LVKWN 
Sbjct: 194 CCRIRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNP 253

Query: 40  VAISKAIIYGISLGP*MCL*IH*IRKDTF------PLEALVLREQHEREGNRWWEDAKAK 93
           VA  +       L   M + ++ +    +      P    VL  QHEREG  WWEDAKAK
Sbjct: 254 VANVEGNDVWNFLRT-MDVPVNTLHAAGYVSIGCEPCTRAVLPGQHEREGRWWWEDAKAK 312

Query: 94  DCGLHKGNVKQDV--GAQLNGNGAA 116
           +CGLHKGN+K++    A  N NG A
Sbjct: 313 ECGLHKGNIKENTNGNATANVNGTA 337


>At4g04610 5'-adenylylsulfate reductase
          Length = 465

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 62/140 (44%), Positives = 75/140 (53%), Gaps = 29/140 (20%)

Query: 1   CCRVRKVRLLRRELKGVTT*IIGQ*KDQSPGT---------------------NLVKWNL 39
           CCRVRKVR LRR LKG+   I GQ KDQSPGT                     +LVKWN 
Sbjct: 202 CCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNP 261

Query: 40  VAISKAIIYGISLGP*MCL*IH*IRKDTF------PLEALVLREQHEREGNRWWEDAKAK 93
           VA  +       L   M + ++ +    +      P    VL  QHEREG  WWEDAKAK
Sbjct: 262 VANVEGNDVWNFLRT-MDVPVNTLHAAGYISIGCEPCTKAVLPGQHEREGRWWWEDAKAK 320

Query: 94  DCGLHKGNVKQDV-GAQLNG 112
           +CGLHKGNVK++   A++NG
Sbjct: 321 ECGLHKGNVKENSDDAKVNG 340


>At3g27810 ATMYB3 (Atmyb3)
          Length = 226

 Score = 26.9 bits (58), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (59%)

Query: 64  RKDTFPLEALVLREQHEREGNRWWEDAK 91
           R +  P E L++ E H + GNRW + AK
Sbjct: 75  RGNITPEEQLIIMELHAKWGNRWSKIAK 102


>At5g40350 putative transcription factor MYB24
          Length = 214

 Score = 25.8 bits (55), Expect = 6.3
 Identities = 12/28 (42%), Positives = 16/28 (56%)

Query: 64 RKDTFPLEALVLREQHEREGNRWWEDAK 91
          R +  P E L + E H + GNRW + AK
Sbjct: 72 RGNITPEEQLTIMELHAKWGNRWSKIAK 99


>At5g07980 putative protein
          Length = 1501

 Score = 25.8 bits (55), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (53%), Gaps = 1/37 (2%)

Query: 84  NRWWEDAKAKDCGLHKGNVKQDVGAQLNGNGAAMQVH 120
           + W  ++       H+GN+ QD+GA+   N  + +VH
Sbjct: 496 HEWANNSTGPHANFHRGNMAQDLGAK-TSNTLSGRVH 531


>At1g25340 putative transcription factor MYB116 (MYB116)
          Length = 283

 Score = 25.4 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 64  RKDTFPLEALVLREQHEREGNRWWEDAK 91
           R +  P E L++ E H + GNRW + +K
Sbjct: 73  RGNLTPQEQLLILELHSKWGNRWSKISK 100


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.344    0.153    0.534 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,580,346
Number of Sequences: 26719
Number of extensions: 91356
Number of successful extensions: 397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 10
length of query: 129
length of database: 11,318,596
effective HSP length: 88
effective length of query: 41
effective length of database: 8,967,324
effective search space: 367660284
effective search space used: 367660284
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 54 (25.4 bits)