BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0212.11
(511 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g37110 71 2e-12
At4g04440 putative transposon protein 68 1e-11
At2g13930 putative retroelement pol polyprotein 67 2e-11
At2g07550 putative retroelement pol polyprotein 67 2e-11
At4g21360 putative transposable element 67 3e-11
At3g45520 copia-like polyprotein 66 5e-11
At1g47360 polyprotein, putative 66 5e-11
At4g22040 LTR retrotransposon like protein 64 3e-10
At1g57640 64 3e-10
At5g35820 copia-like retrotransposable element 63 4e-10
At2g06840 putative retroelement pol polyprotein 61 1e-09
At4g03810 putative retrotransposon protein 61 2e-09
At2g21460 putative retroelement pol polyprotein 60 2e-09
At2g21310 putative retroelement pol polyprotein 60 3e-09
At2g15700 copia-like retroelement pol polyprotein 60 3e-09
At4g10460 putative retrotransposon 60 4e-09
At2g23330 putative retroelement pol polyprotein 59 5e-09
At4g04280 putative transposon protein 59 8e-09
At1g36620 hypothetical protein 59 8e-09
At3g59720 copia-type reverse transcriptase-like protein 58 1e-08
>At1g37110
Length = 1356
Score = 70.9 bits (172), Expect = 2e-12
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S SGY+ G V+ K+ L +A+ST EAE+I + EA KE + +K L Q
Sbjct: 1210 YAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQ 1269
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
D + + + + L K+ +H +KHIDVR ++IRD +
Sbjct: 1270 DMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVV 1314
Score = 49.7 bits (117), Expect = 4e-06
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 12 NEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL---RYKAILMVEDFRHGKS 68
+EM S N ++ LV PK +K + +W+ KL+S + R+KA L+ + + +
Sbjct: 860 DEMDSLMKNGTWDLVDKPKDRKIIGCRWL--FKLKSGIPGVEPTRFKARLVAKGYTQREG 917
Query: 69 VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
VD E+ VK I I++SLV DLE++Q+DVK F
Sbjct: 918 VDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTF 956
Score = 35.0 bits (79), Expect = 0.098
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
VK+QL F MKD+G A ILGI I RDR+
Sbjct: 1054 VKEQLSTEFEMKDMGGASRILGIDIYRDRK 1083
>At4g04440 putative transposon protein
Length = 570
Score = 67.8 bits (164), Expect = 1e-11
Identities = 38/105 (36%), Positives = 57/105 (54%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +GY+ G V+ KS L IA+ T EAE++ ITEA KE L ++ L +
Sbjct: 437 YAADLDKRRSTTGYVFTVGGNTVSWKSNLQNTIAIPTTEAEYVAITEAVKEALWMQGLLK 496
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
D + + + + L K FH +KHI V+ H+IRD +
Sbjct: 497 DMGVKQDKVLVWSDSQCVISLSKKNMFHERTKHIAVKYHFIRDVI 541
Score = 47.8 bits (112), Expect = 1e-05
Identities = 33/98 (33%), Positives = 50/98 (50%), Gaps = 23/98 (23%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSV 69
M +EM S N ++ +V PK +K RYKA L+ F K +
Sbjct: 189 MNDEMNSLWKNFTWDIVDRPKDQK-------------------RYKARLVARGFTQRKGI 229
Query: 70 DSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
D +E+ VK + I +++S+VA DLE++Q+DVK AF
Sbjct: 230 DYDEVFAPVVKHTSIRVLMSIVAQDDLELEQMDVKTAF 267
Score = 32.0 bits (71), Expect = 0.83
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQE 231
+K+ L + F MKD+G A ILG+ I ++R+E
Sbjct: 365 IKEALSQGFEMKDMGPASRILGVDIIKNRKE 395
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 67.4 bits (163), Expect = 2e-11
Identities = 37/109 (33%), Positives = 63/109 (56%)
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D ++S +GY+ G ++ KS+L + +A+S+ EAE++ +TEA KE L LK + S
Sbjct: 1195 DTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHS 1254
Query: 423 RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
+ + L K+ H +KHID+R H+IRD + A L+++V+
Sbjct: 1255 QDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLIKVVK 1303
Score = 33.1 bits (74), Expect = 0.37
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQE---TLDVRGTLC*RLLQRS*MENAK 253
+K+ L F MKD+G A ILG+ I+RDR TL G + ++L+ M+NAK
Sbjct: 1031 LKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVK-KVLRSFQMDNAK 1085
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 67.0 bits (162), Expect = 2e-11
Identities = 37/114 (32%), Positives = 63/114 (54%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +G + G ++ KS L R +A ST E+E++ +TEA KE + LK L +
Sbjct: 1211 YAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLK 1270
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
D + + F + L K+ H +KHIDV+ H+IR+ + +E+++
Sbjct: 1271 DFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTVEVLK 1324
Score = 49.3 bits (116), Expect = 5e-06
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKS 68
M E+ S N ++ +V P+ ++ + +WI KL R+KA L+ + + +
Sbjct: 856 MDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEG 915
Query: 69 VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+D +E+ VK I ++LS+VA DLE++Q+DVK AF
Sbjct: 916 IDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTAF 954
Score = 33.9 bits (76), Expect = 0.22
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDR 229
+K LG F MKD+GAA ILG+ I RDR
Sbjct: 1052 LKANLGMRFEMKDLGAAKKILGMEIIRDR 1080
>At4g21360 putative transposable element
Length = 1308
Score = 66.6 bits (161), Expect = 3e-11
Identities = 37/107 (34%), Positives = 60/107 (55%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
+ D D ++S SGY+ G V+ KS L +ALS+ +AEFI +TEA KE + ++ L +
Sbjct: 1164 HAADLDKRRSISGYVFTVGGNTVSWKSSLQHVVALSSTQAEFIALTEAVKEAIWIRGLLE 1223
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIA 464
D L + + L K+ FH +KH++V+ ++IRD + A
Sbjct: 1224 DMGLQPKPATVWCDSQSAICLSKNNAFHDRTKHVEVKFYFIRDIIEA 1270
Score = 50.4 bits (119), Expect = 2e-06
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKS 68
MK E+ S N ++ +V+ PK +K + +W+ +K RYKA L+ F K
Sbjct: 839 MKEEIDSLLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGVEAQRYKARLVARGFTQQKG 898
Query: 69 VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+D E+ VK I I++S V D+E++Q+DVK F
Sbjct: 899 IDYEEVFAPVVKHISIRILMSAVVKDDMELEQMDVKTTF 937
Score = 33.9 bits (76), Expect = 0.22
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQE-TLDVRGT-LC*RLLQRS*MENAK 253
+K+ L F MKD+GAA ILGI I R+R+E TL + T +++QR M +AK
Sbjct: 1035 LKEALSLKFEMKDMGAASRILGIDIIRNRKEGTLRLSQTRYVDKVIQRFRMADAK 1089
>At3g45520 copia-like polyprotein
Length = 1363
Score = 65.9 bits (159), Expect = 5e-11
Identities = 36/105 (34%), Positives = 57/105 (54%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +G + G ++ KS L R +A S+ E E++ +TEA KE + LK L +
Sbjct: 1218 YAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEYMSLTEAVKEAIWLKGLLK 1277
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
D + N F + L K+ H +KHIDV+ H+IR+ +
Sbjct: 1278 DFGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFHFIREII 1322
Score = 33.5 bits (75), Expect = 0.29
Identities = 17/30 (56%), Positives = 21/30 (69%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQ 230
+KK+L F MKD+GAA ILGI I DR+
Sbjct: 1059 LKKELSIKFEMKDLGAAKKILGIEIIIDRE 1088
>At1g47360 polyprotein, putative
Length = 1182
Score = 65.9 bits (159), Expect = 5e-11
Identities = 36/109 (33%), Positives = 59/109 (54%)
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D ++S SGY+ G + KS+L + +ALST E+E++ +TEA KE L LK L +
Sbjct: 1042 DTRRSISGYVFTIGGNTIIWKSKLQKVVALSTTESEYMALTEAVKEALWLKGLANELGFP 1101
Query: 423 RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
+ + + L K+ H +KHID+ H++RD + + LV+
Sbjct: 1102 QKDVEVHCDSQSVIALAKNSVHHENTKHIDIMLHFVRDVITEGKIRLVK 1150
Score = 56.6 bits (135), Expect = 3e-08
Identities = 36/101 (35%), Positives = 54/101 (52%), Gaps = 5/101 (4%)
Query: 8 DVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHG 66
+ MK EM S N + LV+ P+G K + +WI K RYKA L+ + F
Sbjct: 790 EAMKEEMMSMGKNQTLDLVEKPEGVKIIGCRWIFTRKTGIQGVEAPRYKARLVAKGFTQK 849
Query: 67 KSVDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ +D E+ VK I ++S+VA D+E++Q+DVK AF
Sbjct: 850 EGIDYTEIFSPVVKHVSIRYIVSMVAHFDMELQQMDVKTAF 890
>At4g22040 LTR retrotransposon like protein
Length = 1109
Score = 63.5 bits (153), Expect = 3e-10
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 8 DVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGK 67
+ M E++S N +F +V LP GK+AL NKW+ +K S+ RYKA L+V +
Sbjct: 614 EAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKE 673
Query: 68 SVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
VD +E + KMS + + L + A D V Q+DV AF
Sbjct: 674 GVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAF 713
Score = 49.3 bits (116), Expect = 5e-06
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRT 424
++S +GY ++ ++ K++ I+ S+ EAE+ + +E + LK++ D +S
Sbjct: 966 RRSLTGYFVQLGDTPISWKTKKQPTISRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHV 1025
Query: 425 NTC-CFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALI 463
F K L +P H +KH++V CH+IRDA++
Sbjct: 1026 QAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAIL 1065
>At1g57640
Length = 1444
Score = 63.5 bits (153), Expect = 3e-10
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 8 DVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGK 67
+ M E++S N +F +V LP GK+AL NKW+ +K S+ RYKA L+V +
Sbjct: 949 EAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKIKYRSDGAIERYKARLVVLGNCQKE 1008
Query: 68 SVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
VD +E + KMS + + L + A D V Q+DV AF
Sbjct: 1009 GVDYDETFAPVAKMSTVRLFLGVAAARDWHVHQMDVHNAF 1048
Score = 48.9 bits (115), Expect = 7e-06
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRT 424
++S +GY ++ ++ K++ ++ S+ EAE+ + +E + LK++ D +S
Sbjct: 1301 RRSLTGYFVQLGDTPISWKTKKQPTVSRSSAEAEYRAMAFLTQELMWLKRVLYDLGVSHV 1360
Query: 425 NTC-CFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALI 463
F K L +P H +KH++V CH+IRDA++
Sbjct: 1361 QAMRIFSDSKSAIALSVNPVQHERTKHVEVDCHFIRDAIL 1400
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 62.8 bits (151), Expect = 4e-10
Identities = 36/114 (31%), Positives = 61/114 (52%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +G++ G ++ KS L R +ALST EAE++ + EA KE + L+ L
Sbjct: 1197 YATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAA 1256
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVR 471
+ + + L K+ H +KHIDVR H+IR+ + +++V+
Sbjct: 1257 EMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVK 1310
Score = 51.6 bits (122), Expect = 1e-06
Identities = 33/96 (34%), Positives = 51/96 (52%), Gaps = 5/96 (5%)
Query: 13 EMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKSVDS 71
EM S N ++ ++ P+GK+ + KWI K RYKA L+ + F + +D
Sbjct: 845 EMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDY 904
Query: 72 NEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
E+ VK I +LS+V D+E++Q+DVK AF
Sbjct: 905 QEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAF 940
Score = 33.5 bits (75), Expect = 0.29
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQE 231
+K+ L F MKD+G A ILG+ ITR+R++
Sbjct: 1038 LKESLNREFEMKDLGPARKILGMEITRNREQ 1068
>At2g06840 putative retroelement pol polyprotein
Length = 1102
Score = 61.2 bits (147), Expect = 1e-09
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 4/104 (3%)
Query: 4 KK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDF 63
K+ D M+ E+++ N ++ + LP GKKA+ +KW+ +K S+ T R+KA L+V
Sbjct: 629 KEWCDAMQKEIEALEANHTWDVTDLPHGKKAISSKWVYKLKFNSDGTLERHKARLVVMGN 688
Query: 64 RHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ +D E + KM+ + ++L++ A D +V Q+DV AF
Sbjct: 689 HQKEGIDFKETFAPVAKMTTVRLLLAVAAAKDWDVFQMDVHNAF 732
Score = 42.7 bits (99), Expect = 5e-04
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRT 424
++S S Y++ ++ K++ ++ S+ EAE+ + KE LK L + T
Sbjct: 963 RRSLSAYVLYLGDTPISWKTKKQDTVSSSSAEAEYRAMAYTLKEIKWLKALMTTLGVDHT 1022
Query: 425 NTCC-FVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLL 467
F + + +P FH +KHI+ CH +RDA+ +++
Sbjct: 1023 QPILLFCDSQAAIHIAANPVFHERTKHIEKDCHQVRDAVTDKVI 1066
>At4g03810 putative retrotransposon protein
Length = 964
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/106 (33%), Positives = 58/106 (53%), Gaps = 4/106 (3%)
Query: 2 DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVE 61
D+ K ++ K+EM+S N + LV LP G K +E KWI K++ + YKA L+ +
Sbjct: 453 DSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAK 512
Query: 62 DFRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
++ +D +E + + I I+L+ A D E+ Q+DVK AF
Sbjct: 513 GYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAF 558
Score = 46.2 bits (108), Expect = 4e-05
Identities = 36/108 (33%), Positives = 51/108 (46%), Gaps = 3/108 (2%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
+ D D +S SG+ GG V+ KS +A ST EAE+I +EA KE + ++K
Sbjct: 814 FQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFIT 873
Query: 418 D--*VLSRTNTCCFVIVKVRFILR-KSPTFHSTSKHIDVRCHWIRDAL 462
+ V S + I + K P H SKHI R H IR+ +
Sbjct: 874 ELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREII 921
Score = 37.0 bits (84), Expect = 0.026
Identities = 19/29 (65%), Positives = 21/29 (71%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDR 229
VK LG F MKD+G A +ILGIRI RDR
Sbjct: 655 VKTWLGSCFSMKDMGEAAYILGIRIYRDR 683
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 60.5 bits (145), Expect = 2e-09
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 363 DFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLS 422
D ++S +G + G ++ KS R +ALST EAE++ +TEA KE + +K L ++
Sbjct: 1193 DRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYE 1252
Query: 423 RTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
+ + F + L K+ H +KHIDVR +IRD +
Sbjct: 1253 QKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDII 1292
Score = 56.6 bits (135), Expect = 3e-08
Identities = 36/99 (36%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKS 68
M EM+S N ++ +VK P+ +K + ++WI KL R+KA L+ + + K
Sbjct: 833 MNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKG 892
Query: 69 VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+D +E+ VK I I++S+VA DLE++Q+DVK AF
Sbjct: 893 IDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAF 931
Score = 35.8 bits (81), Expect = 0.058
Identities = 16/31 (51%), Positives = 24/31 (76%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQE 231
+K++L + F MKD+GAA ILG+ I R+R+E
Sbjct: 1029 LKEELSQRFDMKDLGAAKRILGMEIIRNREE 1059
>At2g21310 putative retroelement pol polyprotein
Length = 838
Score = 60.1 bits (144), Expect = 3e-09
Identities = 36/102 (35%), Positives = 52/102 (50%)
Query: 361 DNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*V 420
D D +S +GY G +V+ +S L +ALS+ EAE+I +TEA KE LK L +
Sbjct: 696 DRDRSRSTTGYTFTVGGNIVSWRSCLQPVVALSSTEAEYIALTEAAKEAYWLKDLMNELG 755
Query: 421 LSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDAL 462
+ + L K+ H +KHI R H+IRDA+
Sbjct: 756 FKQGAVDIHCDSQSAIALAKNAVHHERTKHIQRRFHYIRDAI 797
Score = 35.8 bits (81), Expect = 0.058
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQETL 233
+K++L F MKD+G A ILG+ ITR+R+E +
Sbjct: 534 LKERLSSEFEMKDLGPARKILGMEITRNREENI 566
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 60.1 bits (144), Expect = 3e-09
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y D D ++S +GY+ K G ++ KS L +ALST EAE++ +TEA KE + LK L
Sbjct: 1060 YATDLDRRRSVTGYVFKVGGNTISWKSSLQSVVALSTTEAEYMALTEAVKEAIWLKGLCS 1119
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVR 454
+ + N + L K+ H ++HID +
Sbjct: 1120 ELGFKQDNVMVHCDSQSALALAKNSVHHERTEHIDTK 1156
Score = 55.5 bits (132), Expect = 7e-08
Identities = 35/101 (34%), Positives = 57/101 (55%), Gaps = 5/101 (4%)
Query: 8 DVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHG 66
+ MK EM S + ++ L++ P+ +K + KWI +K RYKA L+ + F
Sbjct: 750 NAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQ 809
Query: 67 KSVDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ +D NE+ VK I ++LSL+ +D E++Q+DVK AF
Sbjct: 810 EGIDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAF 850
>At4g10460 putative retrotransposon
Length = 1230
Score = 59.7 bits (143), Expect = 4e-09
Identities = 33/119 (27%), Positives = 62/119 (51%)
Query: 358 YVVDNDFKKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQ 417
Y + + ++S SG + G + L+S L + + +S+ +A ++ +TEA KE + LK L Q
Sbjct: 1085 YAANLENRRSISGMVFTLGGSTINLRSCLQKVVVMSSTKAGYMSLTEAVKEAIWLKGLLQ 1144
Query: 418 D*VLSRTNTCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLELVRFVQMV 476
D + F + L K+ H +KHID++ H IR+ + ++E+ + +V
Sbjct: 1145 DFGYEQKTVEIFCDSQSAIALSKNNVHHDRTKHIDIKYHKIREVIADGVVEVKKICTLV 1203
Score = 42.0 bits (97), Expect = 8e-04
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 14 MKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKSVDSN 72
M S N ++ +VK P G++ + KWI K + R+KA L+ + + + +D
Sbjct: 760 MDSLLKNHTWTVVKKPVGERVIGCKWIFKRKPGTPGIEQPRFKARLVSKGYAQREGIDYT 819
Query: 73 E----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ +VK I I+L++VA + E++Q+DVK AF
Sbjct: 820 DIFSPVVKHVSIRILLAIVAEENYELEQLDVKTAF 854
Score = 38.9 bits (89), Expect = 0.007
Identities = 21/39 (53%), Positives = 28/39 (70%), Gaps = 5/39 (12%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQETLDVRGTL 239
+K++L E F MKD+GAA ILG+ I+RDR V+GTL
Sbjct: 952 LKQKLSEKFEMKDLGAAKRILGMEISRDR-----VKGTL 985
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 59.3 bits (142), Expect = 5e-09
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 4 KK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDF 63
K+ + M E+ + N ++ + LP GKKA+ +KW+ +K S+ T R+KA L+V
Sbjct: 997 KEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYNSDGTLERHKARLVVMGN 1056
Query: 64 RHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ VD E + K++ + +L++ A D EV Q+DV AF
Sbjct: 1057 HQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEVHQMDVHNAF 1100
Score = 45.4 bits (106), Expect = 7e-05
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 365 KKSASGYLIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VLSRT 424
++S S Y++ ++ K++ ++ S+ EAE+ + KE LK L +D + +
Sbjct: 1353 RRSLSAYVVYLGDSPISWKTKKQDTVSYSSAEAEYRAMAYTLKELKWLKALLKDLGVHHS 1412
Query: 425 NTCCFVIVKVRFI-LRKSPTFHSTSKHIDVRCHWIRDALIARLL 467
+ I + +P FH +KHI+ CH +RDA++ +L+
Sbjct: 1413 SPMKLHCDSEAAIHIAANPVFHERTKHIESDCHKVRDAVLDKLI 1456
>At4g04280 putative transposon protein
Length = 1104
Score = 58.5 bits (140), Expect = 8e-09
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 10 MKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSL-RYKAILMVEDFRHGKS 68
M EM S N ++ +V PK +K + W+ KL L RYKA L+ F H +
Sbjct: 694 MIEEMDSLLKNATWDIVDKPKNQKVISCHWLYKKKLGIPGVELPRYKARLVARGFSHREG 753
Query: 69 VDSNEM----VKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+D E+ VK + I I+LSL+ D+E++Q+DVK AF
Sbjct: 754 IDYQEVFSPVVKHTSIRILLSLMVKEDMELEQMDVKTAF 792
Score = 57.8 bits (138), Expect = 1e-08
Identities = 69/230 (30%), Positives = 100/230 (43%), Gaps = 38/230 (16%)
Query: 201 VKKQLGESFFMKDIGAA*HILGIRITRDRQETLDVRGTLC*-------RLLQRS*MENAK 253
+KK L F MKD+GAA LGI I R+R E GTLC R++Q+ M+ AK
Sbjct: 854 LKKVLSREFEMKDMGAASRKLGIDIIRNRSE-----GTLCLSQTSYLERVIQKFRMDGAK 908
Query: 254 R*ALILLLTLN*VLNRGLQIKLKIRYATSSLCICCW*FDVCNGVHKTRYSACCW*NQEMS 313
V+N + K+ + D G K YS+ MS
Sbjct: 909 ------------VVNTPIGAHFKLSSVHND--------DERVGSEKVPYSSVVGSLMFMS 948
Query: 314 NKSG*R--ALECCEIDFEVSLWF*LLIV*GFVLEVISLPMGLD*F*YVVDNDFKKSASGY 371
+ A++ + S+ L+ GF +V G + D D S SGY
Sbjct: 949 KQGEVHWTAVKWLLRYLKWSIGLNLMYTKGFDFKV----QGYCDSDHAADLDKNMSISGY 1004
Query: 372 LIKFVGGVVALKSRLHRCIALSTFEAEFIDITEACKEFL*LKKLFQD*VL 421
+ G +V+ KS L +ALST EAE+I +T+A KE + ++ L D +L
Sbjct: 1005 VFTVGGNIVSWKSCLQPVVALSTTEAEYIALTKAVKEAMWIRNLLDDMML 1054
>At1g36620 hypothetical protein
Length = 1152
Score = 58.5 bits (140), Expect = 8e-09
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 13 EMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVEDFRHGKSVDSN 72
E+ + D ++ + KLP+G KA+ +KW+ +K SN T RYKA L+ + +D
Sbjct: 954 EVDALEDQGTWDITKLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQKEGIDFT 1013
Query: 73 E----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ +VKM + ++L + A D E+ Q+DV AF
Sbjct: 1014 KTFAPVVKMQTVRLLLDVAAAKDWELHQMDVHNAF 1048
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 57.8 bits (138), Expect = 1e-08
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 2 DNKK*MDVMKNEMKSWHDNCSFHLVKLPKGKKALENKWICMVKLESNSTSLRYKAILMVE 61
+ K + M E+KS N ++ L LP G KA+ KW+ K S RYKA L+ +
Sbjct: 846 EKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAK 905
Query: 62 DFRHGKSVDSNE----MVKMSFIEIVLSLVATLDLEVKQIDVKAAF 103
+ +D +E + ++ + +++SL A ++ Q+DVK+AF
Sbjct: 906 GYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAF 951
Score = 38.9 bits (89), Expect = 0.007
Identities = 19/44 (43%), Positives = 26/44 (58%)
Query: 426 TCCFVIVKVRFILRKSPTFHSTSKHIDVRCHWIRDALIARLLEL 469
T FV K L K+P FH SKHID R H+IR+ + + ++L
Sbjct: 1187 TKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQL 1230
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.367 0.164 0.593
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,379,011
Number of Sequences: 26719
Number of extensions: 277567
Number of successful extensions: 1723
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1448
Number of HSP's gapped (non-prelim): 210
length of query: 511
length of database: 11,318,596
effective HSP length: 104
effective length of query: 407
effective length of database: 8,539,820
effective search space: 3475706740
effective search space used: 3475706740
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0212.11