BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0211.11
(298 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54780 unknown protein 385 e-107
At1g47630 hypothetical protein 32 0.32
At1g62440 putative extensin-like protein (gnl|PID|e1310400 30 1.2
At3g48190 ataxia-telangiectasia mutated protein AtATM 30 1.6
At2g22470 arabinogalactan-protein AGP2 30 1.6
At4g39690 unknown protein 30 2.1
At4g08380 extensin-like protein 30 2.1
At4g00890 30 2.1
At5g60980 ras-GTPase-activating protein SH3-domain binding prote... 29 2.7
At4g18670 extensin-like protein 29 2.7
At4g15160 cell wall protein like 29 2.7
At3g24400 protein kinase, putative 29 2.7
At2g26410 putative SF16 protein {Helianthus annuus} 29 2.7
At5g39960 putative protein 29 3.5
At5g07750 putative protein 29 3.5
At1g26150 Pto kinase interactor, putative 29 3.5
At5g43190 unknown protein 28 4.6
At5g04470 unknown protein 28 4.6
At4g22470 extensin - like protein 28 4.6
At4g13340 extensin-like protein 28 4.6
>At1g54780 unknown protein
Length = 285
Score = 385 bits (990), Expect = e-107
Identities = 207/299 (69%), Positives = 241/299 (80%), Gaps = 15/299 (5%)
Query: 1 MGTIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKN-QTLSLKPS 59
M T+ P PPL+ P P LS P S+SL S+P S K+ T KP
Sbjct: 1 METLLSPRALSPPLN---PKP----LSLHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKPE 53
Query: 60 LASSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGV 119
+WL A+QGLAALA++L L FSP+ G ALASEF++LN+ P K++YVVDDAGV
Sbjct: 54 ----SRNWLIDAKQGLAALALSLTLTFSPV---GTALASEFNILNDGPPKETYVVDDAGV 106
Query: 120 LSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWYPSVEEGNDKG 179
LSRVT+SDLK LLSDLE RKK +NFITVRKLTSKADAFEYADQVLE+WYPS+EEGN+KG
Sbjct: 107 LSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKG 166
Query: 180 IVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATDEKYNEAVLSTAKRLVAAI 239
IVVL+TSQKEGA+TGGPAF++AVGENILDATV+ENLPVLATDEKYNEAV S+AKRLVAAI
Sbjct: 167 IVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAI 226
Query: 240 DGLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSLVVGGLLVVAFVVPMLQYYAYVAKK 298
DG PDPGGP VKD+KRESNF+TKEET++KRGQFSLVVGGLLV+AFVVPM QY+AYV++K
Sbjct: 227 DGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285
>At1g47630 hypothetical protein
Length = 552
Score = 32.3 bits (72), Expect = 0.32
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 25 LLSPPSPLPKS----NSLFCSRPIISSLRKNQTLSLKPSLASSGTSWLSHAQQGLAALAI 80
++SP + +P S NS C P+I + N+ ++P + S T L + + LA+
Sbjct: 297 IISPSAIIPASFLPTNSFPCPSPVIVNKAFNRPTLIRPLPSPSSTLALLSSS---STLAL 353
Query: 81 TLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGV 119
L+ +FS + + ++ A D + K +Y+V GV
Sbjct: 354 LLSSSFSCLSIDSSSSACASDFYAVLKCKLAYLVIAGGV 392
>At1g62440 putative extensin-like protein (gnl|PID|e1310400
Length = 786
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/55 (34%), Positives = 25/55 (44%)
Query: 12 PPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGTS 66
PP S K SPT +L PP P K + F + P S + + + P SS S
Sbjct: 385 PPPPSFKMSPTVRVLPPPPPSSKMSPTFRATPPPPSSKMSPSFRATPPPPSSKMS 439
>At3g48190 ataxia-telangiectasia mutated protein AtATM
Length = 3856
Score = 30.0 bits (66), Expect = 1.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 123 VTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYADQVLERWY 169
V R KGL+ L+ H+ + R LTS+ F+Y + +E Y
Sbjct: 2858 VQRQPFKGLIRSLQQTGCMHVLDLYCRGLTSREGCFQYDPEFIELQY 2904
>At2g22470 arabinogalactan-protein AGP2
Length = 131
Score = 30.0 bits (66), Expect = 1.6
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 3 TIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRK-NQTLSLKPSLA 61
T+ PP LPP+++ PSP + SPP P+ + + P S + QT + P +
Sbjct: 30 TVTPPPTALPPVTAETPSP---IASPPVPVNEPTPAPTTSPTTSPVASPPQTDAPAPGPS 86
Query: 62 SSGTSWLSHAQQGLAALAITLALNFSPIFLSGNALA 97
+ T S A A A + FL G A+A
Sbjct: 87 AGLTPTSSPAPGPDGAADAPSAAWANKAFLVGTAVA 122
>At4g39690 unknown protein
Length = 650
Score = 29.6 bits (65), Expect = 2.1
Identities = 46/193 (23%), Positives = 78/193 (39%), Gaps = 24/193 (12%)
Query: 85 NFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHIN 144
N S + + G A+A F V + D Y+ + LS SD L LE + H+N
Sbjct: 71 NSSKVVIGGVAIAGAFLVAYQTGYLDQYLGKEQQKLSERIHSD--ALTEKLE--EAHHLN 126
Query: 145 FIT-VRKLTSKADAFEYADQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTGGP-AFVQAV 202
+ V T K E QV + EG I + Q E ++ ++ +
Sbjct: 127 VPSGVEDSTEKDGKVETQPQVT---HSEASEGVQSDIEL----QPESDLSSDRFTYISSN 179
Query: 203 GENILDATVAE----NLPVLATDEK-----YNEAVLSTAKRLVAAIDGLPDPGGPQVKDN 253
E TV + NLP+ A+++ ++S A+ + ++ +P PG + N
Sbjct: 180 QEETPQETVIDRAEINLPISASEDSGAKPDMPSEIISEAESV--KLEAVPKPGDSPIIVN 237
Query: 254 KRESNFRTKEETE 266
+ S+ + ETE
Sbjct: 238 AQSSSVHRESETE 250
>At4g08380 extensin-like protein
Length = 437
Score = 29.6 bits (65), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPL 32
PP++ PP SS PSP+ SPP P+
Sbjct: 410 PPYVYNPPPSSPPPSPSYSYSSPPPPI 436
>At4g00890
Length = 431
Score = 29.6 bits (65), Expect = 2.1
Identities = 29/117 (24%), Positives = 48/117 (40%), Gaps = 8/117 (6%)
Query: 8 HMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGTSW 67
H + P+ P+ L S SP+P ++ P SS T S KPSL +
Sbjct: 278 HQSKSPMPPPSPTAQISLSSLKSPIPSPATITAPPPPFSSPLSQTTPSPKPSLPQIEPNQ 337
Query: 68 LSHAQQGLAALAITLALNFSPIFLSGNALASEFDVLNEVPAKDSYVVDDAGVLSRVT 124
+ L + SP N + + +++N++PAK+ V + G L + T
Sbjct: 338 IKSPSPKLT----NTESHASP---EQNLVKPDANLMNKIPAKNE-VPKNRGTLEKKT 386
>At5g60980 ras-GTPase-activating protein SH3-domain binding protein
- like
Length = 460
Score = 29.3 bits (64), Expect = 2.7
Identities = 20/91 (21%), Positives = 41/91 (44%), Gaps = 13/91 (14%)
Query: 100 FDVLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFE 159
+ +L++ P D+ L TR D+ G ++ + T++ + K + +
Sbjct: 24 YHILHQSPGLVHRFYQDSSFL---TRPDVTGAVTTVT----------TMQAINDKILSLK 70
Query: 160 YADQVLERWYPSVEEGNDKGIVVLVTSQKEG 190
Y D E +E +++G++VLVT + G
Sbjct: 71 YEDYTAEIETADAQESHERGVIVLVTGRLTG 101
>At4g18670 extensin-like protein
Length = 839
Score = 29.3 bits (64), Expect = 2.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSP 31
PPH +LPP P+PT +SPP P
Sbjct: 718 PPHYSLPP-----PTPTYHYISPPPP 738
>At4g15160 cell wall protein like
Length = 428
Score = 29.3 bits (64), Expect = 2.7
Identities = 11/28 (39%), Positives = 16/28 (56%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLP 33
PP++ PP ++KP P +PP P P
Sbjct: 108 PPYVKPPPPPTVKPPPPPTPYTPPPPTP 135
Score = 28.1 bits (61), Expect = 6.0
Identities = 11/29 (37%), Positives = 16/29 (54%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPK 34
PP++ PP ++KP P + PP P K
Sbjct: 92 PPYVKPPPPPTVKPPPPPYVKPPPPPTVK 120
>At3g24400 protein kinase, putative
Length = 694
Score = 29.3 bits (64), Expect = 2.7
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 6 PPHMT-LPPL--SSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLAS 62
PP +T PPL S + PSPT PPSP S L S P S LR + P+ S
Sbjct: 110 PPAITPSPPLTPSPLPPSPTTPSPPPPSPSIPSPPLTPSPPPSSPLRPSSPPPPSPATPS 169
Query: 63 S 63
+
Sbjct: 170 T 170
Score = 28.5 bits (62), Expect = 4.6
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKS 35
PP T+PP+ PSP L PSPLP S
Sbjct: 59 PPPTTVPPIPPSTPSPPPPL--TPSPLPPS 86
>At2g26410 putative SF16 protein {Helianthus annuus}
Length = 516
Score = 29.3 bits (64), Expect = 2.7
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 3 TIFPPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKN---QTLSLKPS 59
++ P+ PPL P P LL PPSP P + + I +++ Q L+L +
Sbjct: 48 SVHRPYPPPPPLPDFAPQP---LLPPPSPPPPPPAYTINTRIYGESKESKNRQALALASA 104
Query: 60 LASSGTSWLSHA 71
+A+ +HA
Sbjct: 105 VAAEAAVVAAHA 116
>At5g39960 putative protein
Length = 614
Score = 28.9 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 105 EVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRK---KFHINFITV--RKLTSKADAFE 159
E + Y+VD AG L R R LS ++SRK + H+ + + ++ +
Sbjct: 354 EFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAHVIALVLDAEEIIKAKCSMT 413
Query: 160 YADQVLERWYPSVEEGNDKGIVVLV 184
+++ V+ R +VEEG +G+VV+V
Sbjct: 414 HSEVVIAR--RAVEEG--RGLVVIV 434
>At5g07750 putative protein
Length = 1289
Score = 28.9 bits (63), Expect = 3.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKP 58
PP PP +S++ + LL PP P P P +S+R+N L P
Sbjct: 790 PPPPPPPPFASVRRNSETLLPPPPPPPP---------PPFASVRRNSETLLPP 833
Score = 28.5 bits (62), Expect = 4.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 2 GTIFPPHMTLP-PLSSIKPSPTRLLLSPPSPLPKSNSLFCSR---PIISSLRKNQTLSLK 57
GT+ PP P P SS +P+ +L PP P P S++ S P I S + T S
Sbjct: 706 GTVLPPPPPPPLPFSSERPNSGTVL--PPPPSPPWKSVYASALAIPAICSTSQAPTSSPT 763
Query: 58 P 58
P
Sbjct: 764 P 764
>At1g26150 Pto kinase interactor, putative
Length = 760
Score = 28.9 bits (63), Expect = 3.5
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSL 38
PP T P S P T L PP P P S SL
Sbjct: 50 PPETTNTPAQSSPPPETPLSSPPPEPSPPSPSL 82
>At5g43190 unknown protein
Length = 403
Score = 28.5 bits (62), Expect = 4.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 31 PLPKSNSLFCSRPIISSLRKNQTLSLKPSLASS 63
PLP+S SL C+ ++SS SL PS SS
Sbjct: 124 PLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSS 156
>At5g04470 unknown protein
Length = 127
Score = 28.5 bits (62), Expect = 4.6
Identities = 18/73 (24%), Positives = 30/73 (40%)
Query: 11 LPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKPSLASSGTSWLSH 70
+PP ++ P P PPS C R +++SL K + + K + +S +
Sbjct: 43 IPPTTATTPPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNKDEIERFFSSVYNQ 102
Query: 71 AQQGLAALAITLA 83
AIT+A
Sbjct: 103 TMASSTTTAITVA 115
>At4g22470 extensin - like protein
Length = 375
Score = 28.5 bits (62), Expect = 4.6
Identities = 18/55 (32%), Positives = 25/55 (44%), Gaps = 2/55 (3%)
Query: 6 PPHMTLPPLSSIKP--SPTRLLLSPPSPLPKSNSLFCSRPIISSLRKNQTLSLKP 58
PP +T PP +I P SP ++PP PL + +P+ L QT P
Sbjct: 107 PPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPP 161
>At4g13340 extensin-like protein
Length = 760
Score = 28.5 bits (62), Expect = 4.6
Identities = 14/38 (36%), Positives = 18/38 (46%), Gaps = 1/38 (2%)
Query: 6 PPHMTLPPLSSIKPSPTRLLLSPPSPLPKSNSLFCSRP 43
PP PP+ S P P PP P P ++C+RP
Sbjct: 501 PPPPPPPPVYSPPPPPV-YSSPPPPPSPAPTPVYCTRP 537
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.133 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,482,207
Number of Sequences: 26719
Number of extensions: 284959
Number of successful extensions: 1193
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 114
length of query: 298
length of database: 11,318,596
effective HSP length: 99
effective length of query: 199
effective length of database: 8,673,415
effective search space: 1726009585
effective search space used: 1726009585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0211.11