BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0209.4
         (342 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g80070 hypothetical protein                                         30  1.9
At4g38780 splicing factor - like protein                               29  4.2
At2g38510 hypothetical protein                                         28  5.5

>At1g80070 hypothetical protein
          Length = 2382

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 12/44 (27%), Positives = 22/44 (49%)

Query: 128 PRHPTRVGRDIELTSDKTKWQDAMADRFSRKTKLAWIESQRQDL 171
           P  PT    + +L     KW    + R+  K K  ++E+Q++D+
Sbjct: 42  PVEPTPEEAEAKLEEKARKWMQLNSKRYGDKRKFGFVETQKEDM 85


>At4g38780 splicing factor - like protein
          Length = 2352

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 124 PSGR--PRHPTRVGRDIELTSDKTKWQDAMADRFSRKTKLAWIESQRQDL 171
           PS R  P  PT    + +L      W    + R+  K K  ++E+Q++D+
Sbjct: 34  PSNRNTPTVPTPEDAEAKLEKKARTWMQLNSKRYGDKRKFGFVETQKEDM 83


>At2g38510 hypothetical protein
          Length = 486

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 24/105 (22%)

Query: 186 CVDIASHRVDVSARTILVSTLGILAKVP-------------SLGG----RIRPLGVGGAL 228
           C  + + +  V+A  IL+ T GIL  VP             +LGG    R +   V G +
Sbjct: 257 CGLLGNPKASVAAMGILIQTTGILYVVPFAISSAIATRVGHALGGGQPTRAQCTTVIGLI 316

Query: 229 PIWRSGLASSSFATAIRAIMASSVCGVGGVEPLEPVAVDLVSTIL 273
                GLA++ F TA+R++        G +   EP  + L+S  L
Sbjct: 317 LAVAYGLAAAVFVTALRSVW-------GKMFTDEPEILGLISAAL 354


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,406,849
Number of Sequences: 26719
Number of extensions: 304899
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 3
length of query: 342
length of database: 11,318,596
effective HSP length: 100
effective length of query: 242
effective length of database: 8,646,696
effective search space: 2092500432
effective search space used: 2092500432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)