BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0206b.1
(35 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62030 cyclophilin (AtCYP20-3) 58 1e-09
At5g13120 cyclophilin (AtCYP20-2) 57 2e-09
At3g56070 cyclophilin (AtCYP19-3) 54 1e-08
At2g16600 cyclophilin (AtCYP19-1) 53 3e-08
At4g38740 cyclophilin (AtCYP18-3) 52 5e-08
At2g21130 cyclophilin (CYP2) 52 5e-08
At4g34870 cyclophilin (AtCYP18-4) 52 6e-08
At2g29960 cyclophilin (ROC11) 52 6e-08
At3g55920 cyclophilin protein (ROC15) 52 8e-08
At5g58710 cyclophilin (AtCYP20-1) 51 1e-07
At2g38730 cyclophilin (AtCYP22-1) 51 1e-07
At2g36130 cyclophilin protein (AtCYP18-2) 50 3e-07
At2g15790 cyclophilin-40 47 1e-06
At3g44600 cyclophilin (AtCYP71) 46 3e-06
At3g63400 cyclophylin (ROC22) 46 4e-06
At1g01940 cyclophilin (AtCYP18-1) 44 2e-05
At4g34960 cyclophilin (AtCYP21-1) 42 6e-05
At5g67530 cyclophilin (ROC23) 42 8e-05
At4g33060 cyclophilin (AtCYP57) 30 0.24
At1g53720 putative cyclophilin (AtCYP59) 28 0.70
>At3g62030 cyclophilin (AtCYP20-3)
Length = 260
Score = 57.8 bits (138), Expect = 1e-09
Identities = 25/30 (83%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG+LSMANAGPNTNGSQFFI TV
Sbjct: 179 FTLKHTGPGILSMANAGPNTNGSQFFICTV 208
>At5g13120 cyclophilin (AtCYP20-2)
Length = 259
Score = 56.6 bits (135), Expect = 2e-09
Identities = 25/30 (83%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F + HVGPGVLSMANAGPNTNGSQFFI T+
Sbjct: 177 FKLSHVGPGVLSMANAGPNTNGSQFFICTI 206
>At3g56070 cyclophilin (AtCYP19-3)
Length = 176
Score = 54.3 bits (129), Expect = 1e-08
Identities = 23/29 (79%), Positives = 26/29 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F +KH GPG+LSMAN+GPNTNGSQFFI T
Sbjct: 95 FKLKHTGPGILSMANSGPNTNGSQFFICT 123
>At2g16600 cyclophilin (AtCYP19-1)
Length = 173
Score = 53.1 bits (126), Expect = 3e-08
Identities = 23/29 (79%), Positives = 25/29 (85%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F+ KH GPG+LSMANAG NTNGSQFFI T
Sbjct: 96 FIKKHTGPGILSMANAGANTNGSQFFICT 124
>At4g38740 cyclophilin (AtCYP18-3)
Length = 172
Score = 52.4 bits (124), Expect = 5e-08
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F KH GPG+LSMANAG NTNGSQFFI TV
Sbjct: 95 FERKHTGPGILSMANAGANTNGSQFFICTV 124
>At2g21130 cyclophilin (CYP2)
Length = 174
Score = 52.4 bits (124), Expect = 5e-08
Identities = 24/30 (80%), Positives = 25/30 (83%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F KH GPG+LSMANAG NTNGSQFFI TV
Sbjct: 96 FERKHTGPGILSMANAGANTNGSQFFICTV 125
>At4g34870 cyclophilin (AtCYP18-4)
Length = 172
Score = 52.0 bits (123), Expect = 6e-08
Identities = 22/29 (75%), Positives = 25/29 (85%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F+ KH G G+LSMAN+GPNTNGSQFFI T
Sbjct: 95 FIKKHTGAGILSMANSGPNTNGSQFFICT 123
>At2g29960 cyclophilin (ROC11)
Length = 201
Score = 52.0 bits (123), Expect = 6e-08
Identities = 23/30 (76%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPGVLSMAN+G +TNGSQFFI+TV
Sbjct: 123 FKLKHTGPGVLSMANSGEDTNGSQFFITTV 152
>At3g55920 cyclophilin protein (ROC15)
Length = 228
Score = 51.6 bits (122), Expect = 8e-08
Identities = 22/30 (73%), Positives = 27/30 (89%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG LSMAN+GP++NGSQFFI+TV
Sbjct: 150 FKLKHTGPGFLSMANSGPDSNGSQFFITTV 179
>At5g58710 cyclophilin (AtCYP20-1)
Length = 204
Score = 51.2 bits (121), Expect = 1e-07
Identities = 23/30 (76%), Positives = 26/30 (86%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F +KH GPG LSMANAG +TNGSQFFI+TV
Sbjct: 126 FKLKHTGPGFLSMANAGQDTNGSQFFITTV 155
>At2g38730 cyclophilin (AtCYP22-1)
Length = 199
Score = 50.8 bits (120), Expect = 1e-07
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIS 33
F KH GPG+LSMAN+GPNTNG QFFI+
Sbjct: 121 FTAKHTGPGLLSMANSGPNTNGCQFFIT 148
>At2g36130 cyclophilin protein (AtCYP18-2)
Length = 164
Score = 49.7 bits (117), Expect = 3e-07
Identities = 21/26 (80%), Positives = 24/26 (91%)
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIS 33
+KH G G+LSMANAGPNTNGSQFFI+
Sbjct: 88 LKHTGAGILSMANAGPNTNGSQFFIT 113
>At2g15790 cyclophilin-40
Length = 361
Score = 47.4 bits (111), Expect = 1e-06
Identities = 21/29 (72%), Positives = 25/29 (85%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFIST 34
F +KH G+LSMAN+GPNTNGSQFFI+T
Sbjct: 96 FELKHERKGMLSMANSGPNTNGSQFFITT 124
>At3g44600 cyclophilin (AtCYP71)
Length = 631
Score = 46.2 bits (108), Expect = 3e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFISTV 35
++H P LSMANAGPNTNGSQFFI+TV
Sbjct: 554 LRHDRPFTLSMANAGPNTNGSQFFITTV 581
>At3g63400 cyclophylin (ROC22)
Length = 567
Score = 45.8 bits (107), Expect = 4e-06
Identities = 21/27 (77%), Positives = 22/27 (80%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFI 32
F + H G GVLSMAN GPNTNGSQFFI
Sbjct: 99 FRLDHDGAGVLSMANCGPNTNGSQFFI 125
>At1g01940 cyclophilin (AtCYP18-1)
Length = 160
Score = 43.9 bits (102), Expect = 2e-05
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIS 33
+KH G+LSMAN+GPNTNGSQFFI+
Sbjct: 79 LKHNARGMLSMANSGPNTNGSQFFIT 104
>At4g34960 cyclophilin (AtCYP21-1)
Length = 224
Score = 42.0 bits (97), Expect = 6e-05
Identities = 17/30 (56%), Positives = 25/30 (82%)
Query: 6 FVVKHVGPGVLSMANAGPNTNGSQFFISTV 35
F ++H G+++MAN GP++NGSQFFI+TV
Sbjct: 138 FKIQHSHAGMVAMANTGPDSNGSQFFITTV 167
>At5g67530 cyclophilin (ROC23)
Length = 595
Score = 41.6 bits (96), Expect = 8e-05
Identities = 17/23 (73%), Positives = 21/23 (90%)
Query: 10 HVGPGVLSMANAGPNTNGSQFFI 32
H G GV+SMAN+GP+TNGSQFF+
Sbjct: 424 HSGRGVVSMANSGPHTNGSQFFV 446
>At4g33060 cyclophilin (AtCYP57)
Length = 504
Score = 30.0 bits (66), Expect = 0.24
Identities = 13/21 (61%), Positives = 18/21 (84%), Gaps = 1/21 (4%)
Query: 14 GVLSMANAG-PNTNGSQFFIS 33
G+++MANA PN+NGSQFF +
Sbjct: 97 GIVAMANASSPNSNGSQFFFT 117
>At1g53720 putative cyclophilin (AtCYP59)
Length = 506
Score = 28.5 bits (62), Expect = 0.70
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 8 VKHVGPGVLSMANAGPNTNGSQFFIS 33
+KH G ++MA+ G N N SQF+ +
Sbjct: 86 LKHSKTGTVAMASGGENLNASQFYFT 111
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 806,591
Number of Sequences: 26719
Number of extensions: 15130
Number of successful extensions: 42
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 20
length of query: 35
length of database: 11,318,596
effective HSP length: 11
effective length of query: 24
effective length of database: 11,024,687
effective search space: 264592488
effective search space used: 264592488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0206b.1