BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0201.13
         (413 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g60170 putative protein                                            377  e-105
At1g58140 hypothetical protein                                        353  7e-98
At1g48710 hypothetical protein                                        353  7e-98
At3g61330 copia-type polyprotein                                      350  8e-97
At2g15650 putative retroelement pol polyprotein                       342  3e-94
At1g32590 hypothetical protein, 5' partial                            306  1e-83
At1g59265 polyprotein, putative                                       306  2e-83
At1g58889 polyprotein, putative                                       306  2e-83
At2g20460 putative retroelement pol polyprotein                       303  1e-82
At1g70010 hypothetical protein                                        300  1e-81
At4g02960 putative polyprotein of LTR transposon                      298  3e-81
At2g16000 putative retroelement pol polyprotein                       298  3e-81
At1g53810                                                             296  1e-80
At1g31210 putative reverse transcriptase                              295  3e-80
At4g10690 retrotransposon like protein                                290  8e-79
At2g16670 putative retroelement pol polyprotein                       290  1e-78
At4g10990 putative retrotransposon polyprotein                        289  2e-78
At4g27210 putative protein                                            289  2e-78
At2g13940 putative retroelement pol polyprotein                       288  3e-78
At3g25450 hypothetical protein                                        286  1e-77

>At3g60170 putative protein
          Length = 1339

 Score =  377 bits (968), Expect = e-105
 Identities = 190/401 (47%), Positives = 274/401 (67%), Gaps = 3/401 (0%)

Query: 11   WRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFL 70
            ++L + SAFL+G + EEVYV QP GF  E + + V+KL+K+LYGLKQAPRAWY R+ ++ 
Sbjct: 932  FQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLRKALYGLKQAPRAWYSRIEAYF 991

Query: 71   LENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMG 130
            L+ EF R   + TLF KT   +ILIV +YVDD+IF  +++++C EF + M  EFEMS +G
Sbjct: 992  LKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLG 1051

Query: 131  ELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVC 190
            ++K+FLGI+V Q+  G +I Q +Y +E+L +F M ES   K P+ P   L K++   KV 
Sbjct: 1052 KMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVD 1111

Query: 191  QKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY 250
            + +++ ++GSL+YLT +RPD+++ V L +RF S+PR +H  A KRILRYLKGT  LG+ Y
Sbjct: 1112 ETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAAKRILRYLKGTVELGIFY 1171

Query: 251  --KKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYI 308
              +K    KL  + D+DYAGD  +R+STSG    + S  + WASK+Q  +ALST EAEYI
Sbjct: 1172 RRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASGAICWASKKQPVVALSTTEAEYI 1231

Query: 309  SAAICSTQMLWMKH*LEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIR 367
            +AA C+ Q +W++  LE     E S   I CDN++ I LSK+P+LH ++KHIEV++H++R
Sbjct: 1232 AAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLR 1291

Query: 368  DYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
            D V   V+ L++  T+ Q ADIFTKPL  ++F  +   L M
Sbjct: 1292 DLVNGDVVKLEYCPTEDQVADIFTKPLKLEQFEKLRALLGM 1332


>At1g58140 hypothetical protein
          Length = 1320

 Score =  353 bits (907), Expect = 7e-98
 Identities = 176/384 (45%), Positives = 250/384 (64%), Gaps = 1/384 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            SAFLNG + EEVY+ QP G+  + + D V +LKK+LYGLKQAPRAW  R+  +  E +F+
Sbjct: 917  SAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFI 976

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
            +   +  L+ K  K+DILI  +YVDD+IF   N S+ +EF + M  EFEM+ +G + Y+L
Sbjct: 977  KCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYL 1036

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GI+V Q   G +I Q  Y KE+LKKF M +S    TPM     L K+++   V    ++ 
Sbjct: 1037 GIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKS 1096

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
            ++GSL YLT +RPDIL++V + +R+   P  TH  A KRILRY+KGT N GL Y  TS+Y
Sbjct: 1097 LVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDY 1156

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
            KL GY D+D+ GD  +RKSTSG   ++G    +W SK+Q  + LST EAEY++A  C   
Sbjct: 1157 KLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCH 1216

Query: 317  MLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
             +W+++ L++  +  E    I+ DN +AI+L+KNP+ H R+KHI+ +YH+IR+ V K  +
Sbjct: 1217 AIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDV 1276

Query: 376  LLKFVDTDHQWADIFTKPLAEDRF 399
             L++V T  Q ADIFTKPL  + F
Sbjct: 1277 QLEYVKTHDQVADIFTKPLKREDF 1300


>At1g48710 hypothetical protein
          Length = 1352

 Score =  353 bits (907), Expect = 7e-98
 Identities = 176/384 (45%), Positives = 250/384 (64%), Gaps = 1/384 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            SAFLNG + EEVY+ QP G+  + + D V +LKK+LYGLKQAPRAW  R+  +  E +F+
Sbjct: 949  SAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFI 1008

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
            +   +  L+ K  K+DILI  +YVDD+IF   N S+ +EF + M  EFEM+ +G + Y+L
Sbjct: 1009 KCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYL 1068

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GI+V Q   G +I Q  Y KE+LKKF M +S    TPM     L K+++   V    ++ 
Sbjct: 1069 GIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKS 1128

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
            ++GSL YLT +RPDIL++V + +R+   P  TH  A KRILRY+KGT N GL Y  TS+Y
Sbjct: 1129 LVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDY 1188

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
            KL GY D+D+ GD  +RKSTSG   ++G    +W SK+Q  + LST EAEY++A  C   
Sbjct: 1189 KLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCH 1248

Query: 317  MLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
             +W+++ L++  +  E    I+ DN +AI+L+KNP+ H R+KHI+ +YH+IR+ V K  +
Sbjct: 1249 AIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDV 1308

Query: 376  LLKFVDTDHQWADIFTKPLAEDRF 399
             L++V T  Q ADIFTKPL  + F
Sbjct: 1309 QLEYVKTHDQVADIFTKPLKREDF 1332


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  350 bits (898), Expect = 8e-97
 Identities = 174/384 (45%), Positives = 248/384 (64%), Gaps = 1/384 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            SAFLNG + EEVY+ QP G+  + + D V +LKK LYGLKQAPRAW  R+  +  E +F+
Sbjct: 949  SAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFI 1008

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
            +   +  L+ K  K+DILI  +YVDD+IF   N S+ +EF + M  EFEM+ +G + Y+L
Sbjct: 1009 KCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYL 1068

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GI+V Q   G +I Q  Y KE+LKKF + +S    TPM     L K+++   V    ++ 
Sbjct: 1069 GIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKS 1128

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
            ++GSL YLT +RPDIL++V + +R+   P  TH  A KRILRY+KGT N GL Y  TS+Y
Sbjct: 1129 LVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDY 1188

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
            KL GY D+D+ GD  +RKSTSG   ++G    +W SK+Q  + LST EAEY++A  C   
Sbjct: 1189 KLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCH 1248

Query: 317  MLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
             +W+++ L++  +  E    I+ DN +AI+L+KNP+ H R+KHI+ +YH+IR+ V K  +
Sbjct: 1249 AIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDV 1308

Query: 376  LLKFVDTDHQWADIFTKPLAEDRF 399
             L++V T  Q AD FTKPL  + F
Sbjct: 1309 QLEYVKTHDQVADFFTKPLKRENF 1332


>At2g15650 putative retroelement pol polyprotein
          Length = 1347

 Score =  342 bits (876), Expect = 3e-94
 Identities = 175/407 (42%), Positives = 253/407 (61%), Gaps = 8/407 (1%)

Query: 9    LSWRLR---M*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
            + WRL    + SAFLNG + EEVYV QPPGF  E K + V +L K+LYGLKQAPRAWYER
Sbjct: 937  MKWRLYQMDVKSAFLNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYER 996

Query: 66   LSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFE 125
            + S+ ++N F R   D  L+ K   +D+LIV +YVDD+I    N  L   F + M+ EFE
Sbjct: 997  IDSYFIQNGFARSMNDAALYSKKKGEDVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFE 1056

Query: 126  MSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCI---LEK 182
            M+ +G L YFLG++V+Q   G ++ Q KY  +L+ KF M ES    TP+ P      +E 
Sbjct: 1057 MTDLGLLNYFLGMEVNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEG 1116

Query: 183  EDKSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKG 242
            +DK      K YR ++G LLYL ASRPD++++    +R+ S P   H    KR+LRY+KG
Sbjct: 1117 DDKEFADPTK-YRRIVGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKG 1175

Query: 243  TTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALST 302
            T+N G+++      +L GY D+D+ G   ++KST+G    LG  +  W S +Q T+A ST
Sbjct: 1176 TSNFGVLFTSKETPRLVGYSDSDWGGSLEDKKSTTGYVFTLGLAMFCWQSCKQQTVAQST 1235

Query: 303  AEAEYISAAICSTQMLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEV 361
            AEAEYI+    + Q +W++   ED+ +  +  IPI CDN +AI++ +NP+ H R KHIE+
Sbjct: 1236 AEAEYIAVCAATNQAIWLQRLFEDFGLKFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEI 1295

Query: 362  KYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
            KYHF+R+   KG++ L++   + Q AD+ TK L+  RF  + + L +
Sbjct: 1296 KYHFVREAEHKGLIQLEYCKGEDQLADVLTKALSVSRFEGLRRKLGV 1342


>At1g32590 hypothetical protein, 5' partial
          Length = 1263

 Score =  306 bits (785), Expect = 1e-83
 Identities = 159/390 (40%), Positives = 237/390 (60%), Gaps = 33/390 (8%)

Query: 11   WRLRM*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFL 70
            ++L + SAFL+G + E+V+V QP GFE E++   V+KLKK+LYGLKQAPRAWY R+  F 
Sbjct: 892  FQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFF 951

Query: 71   LENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMG 130
             +  F +   + TLF K  + D L+V +YVDD+I+  ++  + + F   M  EF M+ +G
Sbjct: 952  GKEGFEKCYCEHTLFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLG 1011

Query: 131  ELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVC 190
            ++KYFLG++V Q   G +I+Q KY  E++KK+ M      K P+ P    +K  K+G V 
Sbjct: 1012 KMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPG---QKLTKAGAV- 1067

Query: 191  QKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY 250
                                        +R+   P E HL AVKRILRY++GT +LG+ Y
Sbjct: 1068 ----------------------------SRYMESPNEQHLLAVKRILRYVQGTLDLGIQY 1099

Query: 251  KKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISA 310
            ++    +L G+ D+DYAGD  +RKSTSG    LG   ++WASK+Q  + LST EAE++SA
Sbjct: 1100 ERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSA 1159

Query: 311  AICSTQMLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 369
            +  + Q +W+++ LE+     E    ++CDN++ I LSKNP+LH R+KHI V+YHF+R+ 
Sbjct: 1160 SYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLREL 1219

Query: 370  VQKGVLLLKFVDTDHQWADIFTKPLAEDRF 399
            V++G + L +  T  Q ADI TK +  + F
Sbjct: 1220 VKEGTIRLDYCTTTDQVADIMTKAVKREVF 1249


>At1g59265 polyprotein, putative
          Length = 1466

 Score =  306 bits (783), Expect = 2e-83
 Identities = 169/400 (42%), Positives = 238/400 (59%), Gaps = 5/400 (1%)

Query: 10   SWRLR---M*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 66
            SW +R   + +AFL G ++++VY+ QPPGF D+ +P++V KL+K+LYGLKQAPRAWY  L
Sbjct: 1058 SWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVEL 1117

Query: 67   SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 126
             ++LL   FV    DT+LF       I+ + +YVDDI+    + +L     + +   F +
Sbjct: 1118 RNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSV 1177

Query: 127  SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKS 186
                EL YFLGI+  + P G ++ Q +Y  +LL + NM+ +    TPM P+  L     +
Sbjct: 1178 KDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGT 1237

Query: 187  GKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 246
                   YRG++GSL YL  +RPDI ++V+  ++F   P E HL A+KRILRYL GT N 
Sbjct: 1238 KLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNH 1297

Query: 247  GLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 306
            G+  KK +   L  Y DAD+AGD+ +  ST+G   +LG + +SW+SK+Q  +  S+ EAE
Sbjct: 1298 GIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1357

Query: 307  YISAAICSTQMLWMKH*LEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHIEVKYHF 365
            Y S A  S++M W+   L +  I  +  P IYCDN  A  L  NP+ HSR KHI + YHF
Sbjct: 1358 YRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHF 1417

Query: 366  IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF-NFILK 404
            IR+ VQ G L +  V T  Q AD  TKPL+   F NF  K
Sbjct: 1418 IRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASK 1457


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  306 bits (783), Expect = 2e-83
 Identities = 169/400 (42%), Positives = 238/400 (59%), Gaps = 5/400 (1%)

Query: 10   SWRLR---M*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 66
            SW +R   + +AFL G ++++VY+ QPPGF D+ +P++V KL+K+LYGLKQAPRAWY  L
Sbjct: 1058 SWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVEL 1117

Query: 67   SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 126
             ++LL   FV    DT+LF       I+ + +YVDDI+    + +L     + +   F +
Sbjct: 1118 RNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSV 1177

Query: 127  SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKS 186
                EL YFLGI+  + P G ++ Q +Y  +LL + NM+ +    TPM P+  L     +
Sbjct: 1178 KDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGT 1237

Query: 187  GKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 246
                   YRG++GSL YL  +RPDI ++V+  ++F   P E HL A+KRILRYL GT N 
Sbjct: 1238 KLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNH 1297

Query: 247  GLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 306
            G+  KK +   L  Y DAD+AGD+ +  ST+G   +LG + +SW+SK+Q  +  S+ EAE
Sbjct: 1298 GIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1357

Query: 307  YISAAICSTQMLWMKH*LEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHIEVKYHF 365
            Y S A  S++M W+   L +  I  +  P IYCDN  A  L  NP+ HSR KHI + YHF
Sbjct: 1358 YRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHF 1417

Query: 366  IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF-NFILK 404
            IR+ VQ G L +  V T  Q AD  TKPL+   F NF  K
Sbjct: 1418 IRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASK 1457


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  303 bits (775), Expect = 1e-82
 Identities = 160/397 (40%), Positives = 240/397 (60%), Gaps = 6/397 (1%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEK----KPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 72
            +AFLNG + E +Y+  P G+ D K     P+ V +LKKS+YGLKQA R W+ + S+ LL 
Sbjct: 1058 NAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLA 1117

Query: 73   NEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGEL 132
              F +   D TLF +    + +++ +YVDDI+  S  +   +  +E ++A F++  +G L
Sbjct: 1118 LGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPL 1177

Query: 133  KYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQK 192
            KYFLG++V +T EG  + Q KY  ELL   +ML+   +  PM P   L K D      ++
Sbjct: 1178 KYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKE 1237

Query: 193  LYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKK 252
            +YR ++G L+YLT +RPDI F+V+   +F S PR  HL AV ++L+Y+KGT   GL Y  
Sbjct: 1238 MYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSA 1297

Query: 253  TSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAI 312
              +  L GY DAD+      R+ST+G   F+GS+L+SW SK+Q T++ S+AEAEY + A+
Sbjct: 1298 EDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALAL 1357

Query: 313  CSTQMLWMKH*LEDYQILESNIPI-YCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQ 371
             S +M W+   L   ++  S +PI Y D+TAA+ ++ NP+ H R KHIE+  H +R+ + 
Sbjct: 1358 ASCEMAWLSTLLLALRV-HSGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLD 1416

Query: 372  KGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
             G L L  V T  Q ADI TKPL   +F  +L  +++
Sbjct: 1417 NGQLKLLHVKTKDQVADILTKPLFPYQFAHLLSKMSI 1453


>At1g70010 hypothetical protein
          Length = 1315

 Score =  300 bits (768), Expect = 1e-81
 Identities = 158/397 (39%), Positives = 237/397 (58%), Gaps = 5/397 (1%)

Query: 17   SAFLNGYISEEVYVHQPPGFE----DEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 72
            +AFLNG + EE+Y+  P G+     D   P+ V +LKKSLYGLKQA R WY + SS LL 
Sbjct: 912  NAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSSTLLG 971

Query: 73   NEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGEL 132
              F++   D T F K      L V +Y+DDII  S N +        M++ F++  +GEL
Sbjct: 972  LGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGEL 1031

Query: 133  KYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQK 192
            KYFLG+++ ++ +G +I Q KY  +LL +   L    +  PM P+ +   +     V   
Sbjct: 1032 KYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVG 1091

Query: 193  LYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKK 252
             YR +IG L+YL  +RPDI F+V+  A+F   PR+ HL AV +IL+Y+KGT   GL Y  
Sbjct: 1092 PYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSA 1151

Query: 253  TSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAI 312
            TSE +L  Y +ADY   R  R+STSG C FLG +L+ W S++Q  ++ S+AEAEY S ++
Sbjct: 1152 TSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSV 1211

Query: 313  CSTQMLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQ 371
             + +++W+ + L++ Q+ L     ++CDN AAI ++ N + H R KHIE   H +R+ + 
Sbjct: 1212 ATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVRERLL 1271

Query: 372  KGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
            KG+  L  ++T+ Q AD FTKPL    F+ ++  + +
Sbjct: 1272 KGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  298 bits (764), Expect = 3e-81
 Identities = 164/400 (41%), Positives = 238/400 (59%), Gaps = 5/400 (1%)

Query: 10   SWRLR---M*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERL 66
            SW +R   + +AFL G +++EVY+ QPPGF D+ +PD+V +L+K++YGLKQAPRAWY  L
Sbjct: 1041 SWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVEL 1100

Query: 67   SSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 126
             ++LL   FV    DT+LF       I+ + +YVDDI+    +  L K   + +   F +
Sbjct: 1101 RTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSV 1160

Query: 127  SMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKS 186
                +L YFLGI+  + P+G ++ Q +YT +LL + NML +    TPM  +  L     +
Sbjct: 1161 KEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGT 1220

Query: 187  GKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNL 246
                   YRG++GSL YL  +RPD+ ++V+  +++   P + H  A+KR+LRYL GT + 
Sbjct: 1221 KLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDH 1280

Query: 247  GLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAE 306
            G+  KK +   L  Y DAD+AGD  +  ST+G   +LG + +SW+SK+Q  +  S+ EAE
Sbjct: 1281 GIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAE 1340

Query: 307  YISAAICSTQMLWMKH*LEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHIEVKYHF 365
            Y S A  S+++ W+   L +  I  S+ P IYCDN  A  L  NP+ HSR KHI + YHF
Sbjct: 1341 YRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHF 1400

Query: 366  IRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRF-NFILK 404
            IR+ VQ G L +  V T  Q AD  TKPL+   F NF  K
Sbjct: 1401 IRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRK 1440


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  298 bits (764), Expect = 3e-81
 Identities = 156/396 (39%), Positives = 239/396 (59%), Gaps = 4/396 (1%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEK----KPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 72
            +AFLNG + EE+++  P G+ + K      + V +LK+S+YGLKQA R W+++ SS LL 
Sbjct: 1051 NAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLS 1110

Query: 73   NEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGEL 132
              F +   D TLF K Y  + +IV +YVDDI+  S +++   + +E +   F++  +G+L
Sbjct: 1111 LGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDL 1170

Query: 133  KYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQK 192
            KYFLG++V +T  G  I Q KY  ELL+   ML       PM P   + K+D       +
Sbjct: 1171 KYFLGLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIE 1230

Query: 193  LYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKK 252
             YR ++G L+YLT +RPDI F+V+   +F S PR THLTA  R+L+Y+KGT   GL Y  
Sbjct: 1231 QYRRIVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSA 1290

Query: 253  TSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAI 312
            +S+  L G+ D+D+A  +  R+ST+    F+G +L+SW SK+Q T++ S+AEAEY + A+
Sbjct: 1291 SSDLTLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALAL 1350

Query: 313  CSTQMLWMKH*LEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQK 372
             + +M+W+   L   Q       +Y D+TAAI ++ NP+ H R KHI++  H +R+ +  
Sbjct: 1351 ATCEMVWLFTLLVSLQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDN 1410

Query: 373  GVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
            G L L  V T+ Q ADI TKPL   +F  +   +++
Sbjct: 1411 GELKLLHVRTEDQVADILTKPLFPYQFEHLKSKMSI 1446


>At1g53810 
          Length = 1522

 Score =  296 bits (759), Expect = 1e-80
 Identities = 158/419 (37%), Positives = 243/419 (57%), Gaps = 17/419 (4%)

Query: 9    LSWRLR---M*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
            L W L+   + +AFL+G ++E VY+ QP GF D+ KPDHV  L KSLYGLKQ+PRAW++R
Sbjct: 1016 LKWELKQMDVKNAFLHGDLTETVYMRQPAGFVDKSKPDHVCLLHKSLYGLKQSPRAWFDR 1075

Query: 66   LSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFE 125
             S+FLLE  F+    D +LF  +  +D++++ +YVDD++    N          +  EF 
Sbjct: 1076 FSNFLLEFGFICSLFDPSLFVYSSNNDVILLLLYVDDMVITGNNSQSLTHLLAALNKEFR 1135

Query: 126  MSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDK 185
            M  MG++ YFLGIQ+     G ++ Q KY ++LL   +M   +   TP+     L++   
Sbjct: 1136 MKDMGQVHYFLGIQIQTYDGGLFMSQQKYAEDLLITASMANCSPMPTPL--PLQLDRVSN 1193

Query: 186  SGKVCQ--KLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGT 243
              +V      +R + G L YLT +RPDI F+V+   +    P  +    +KRILRY+KGT
Sbjct: 1194 QDEVFSDPTYFRSLAGKLQYLTLTRPDIQFAVNFVCQKMHQPSVSDFNLLKRILRYIKGT 1253

Query: 244  TNLGLMYKKT---------SEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKR 294
             ++G+ Y            S+Y LS Y D+DYA  +  R+S  G C F+G N++SW+SK+
Sbjct: 1254 VSMGIQYNSNSSSVVSAYESDYDLSAYSDSDYANCKETRRSVGGYCTFMGQNIISWSSKK 1313

Query: 295  QSTIALSTAEAEYISAAICSTQMLWMKH*LEDYQILESNIP-IYCDNTAAISLSKNPILH 353
            Q T++ S+ EAEY S +  ++++ WM   L +  +   + P ++CDN +A+ L+ NP  H
Sbjct: 1314 QPTVSRSSTEAEYRSLSETASEIKWMSSILREIGVSLPDTPELFCDNLSAVYLTANPAFH 1373

Query: 354  SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNMDFCP 412
            +R KH +V +H+IR+ V    L++K +    Q ADIFTK L  + F  +   L +DF P
Sbjct: 1374 ARTKHFDVDHHYIRERVALKTLVVKHIPGHLQLADIFTKSLPFEAFTRLRFKLGVDFPP 1432


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  295 bits (755), Expect = 3e-80
 Identities = 153/397 (38%), Positives = 236/397 (58%), Gaps = 3/397 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            +AFL+G + E V+++QP GF D +KP HV +L K++YGLKQAPRAW++  S+FLL+  FV
Sbjct: 971  NAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFV 1030

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
              K D +LF       IL + +YVDDI+   ++QSL ++  + ++  F M  +G  +YFL
Sbjct: 1031 CSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFL 1090

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GIQ++    G ++HQ+ Y  ++L++  M +     TP+     L+  +         +R 
Sbjct: 1091 GIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQQ--LDNLNSELFAEPTYFRS 1148

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
            + G L YLT +RPDI F+V+   +    P  +    +KRILRY+KGT  +GL  K+ S  
Sbjct: 1149 LAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTL 1208

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
             LS Y D+D+AG +  R+ST+G C  LGSNL+SW++KRQ T++ S+ EAEY +    + +
Sbjct: 1209 TLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAARE 1268

Query: 317  MLWMKH*LEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
            + W+   L D  I +     +YCDN +A+ LS NP LH+R+KH +  YH+IR+ V  G++
Sbjct: 1269 ITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLI 1328

Query: 376  LLKFVDTDHQWADIFTKPLAEDRFNFILKNLNMDFCP 412
              + +    Q AD+FTK L    F  +   L +   P
Sbjct: 1329 ETQHISATFQLADVFTKSLPRRAFVDLRSKLGVSGSP 1365


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  290 bits (743), Expect = 8e-79
 Identities = 151/384 (39%), Positives = 232/384 (60%), Gaps = 3/384 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            +AFL+  + E V++ QPPGFED  +PD+V KLKK++Y LKQAPRAW+++ SS+LL+  F+
Sbjct: 1031 NAFLHDELKETVFMTQPPGFEDPSRPDYVCKLKKAIYDLKQAPRAWFDKFSSYLLKYGFI 1090

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
                D +LF      D++ + +YVDD+I    N  L ++   ++  EF M  MG L YFL
Sbjct: 1091 CSFSDPSLFVYLKGRDVMFLLLYVDDMILTGNNDVLLQQLLNILSTEFRMKDMGALHYFL 1150

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GIQ     +G ++ Q KYT +LL    M + +   TP+    +L+  +K        +R 
Sbjct: 1151 GIQAHYHNDGLFLSQEKYTSDLLVNAGMSDCSSMPTPLQ-LDLLQGNNKPFPE-PTYFRR 1208

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
            + G L YLT +RPDI F+V+   +    P  +    +KRIL YLKGT  +G+     ++ 
Sbjct: 1209 LAGKLQYLTLTRPDIQFAVNFVCQKMHAPTMSDFHLLKRILHYLKGTMTMGINLSSNTDS 1268

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
             L  Y D+D+AG +  R+ST G C FLG N++SW++KR  T++ S+ EAEY + +  +++
Sbjct: 1269 VLRCYSDSDWAGCKDTRRSTGGFCTFLGYNIISWSAKRHPTVSKSSTEAEYRTLSFAASE 1328

Query: 317  MLWMKH*LEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
            + W+   L++  + +  IP +YCDN +A+ LS NP LHSR+KH +V Y+++R+ V  G L
Sbjct: 1329 VSWIGFLLQEIGLPQQQIPEMYCDNLSAVYLSANPALHSRSKHFQVDYYYVRERVALGAL 1388

Query: 376  LLKFVDTDHQWADIFTKPLAEDRF 399
             +K +    Q ADIFTK L +  F
Sbjct: 1389 TVKHIPASQQLADIFTKSLPQAPF 1412


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  290 bits (741), Expect = 1e-78
 Identities = 150/385 (38%), Positives = 231/385 (59%), Gaps = 2/385 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            +AFL+G + EEVY+  PPGFE    P+ V +L+K+LYGLKQAPR W+E+L++ L    F 
Sbjct: 935  NAFLHGDLREEVYMKLPPGFE-ASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQ 993

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
            +   D +LF        + + IYVDD+I    +Q   ++F E + + F M  +G LKYFL
Sbjct: 994  QSLADYSLFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFL 1053

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GI+V ++  G YI Q KY  +++ +  +L    A  P+     L           + YR 
Sbjct: 1054 GIEVARSTTGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRR 1113

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
            ++G L+YL  +R D+ FSVH+ ARF  +PRE H  A  R++RYLK     G+  +++ ++
Sbjct: 1114 LVGRLIYLAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDF 1173

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
            +++G+CD+D+AGD   R+S +G     G + +SW +K+Q T++ S+AEAEY + +  +++
Sbjct: 1174 QITGWCDSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASE 1233

Query: 317  MLWMKH*LEDYQILESNIPIY-CDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
            +LW+K  L    +      I  CD+ +AI ++ NP+ H R KHIE+ YHF+RD   KGV+
Sbjct: 1234 LLWLKQLLFSLGVSHVQPMIMCCDSKSAIYIATNPVFHERTKHIEIDYHFVRDEFVKGVI 1293

Query: 376  LLKFVDTDHQWADIFTKPLAEDRFN 400
              + V T  Q ADIFTKPL  D F+
Sbjct: 1294 TPRHVGTTSQLADIFTKPLGRDCFS 1318


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  289 bits (740), Expect = 2e-78
 Identities = 148/385 (38%), Positives = 233/385 (60%), Gaps = 9/385 (2%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDE------KKPDHVFKLKKSLYGLKQAPRAWYERLSSFL 70
            +AFL+G + EE+Y+  P G+          KP  V +L KSLYGLKQA R WY+RLSS  
Sbjct: 636  NAFLHGELDEEIYMSLPQGYTPPTGISLPSKP--VCRLLKSLYGLKQASRQWYKRLSSVF 693

Query: 71   LENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMG 130
            L   F++   D T+F K     I++V +YVDD++  S + S  +   E++++EF++  +G
Sbjct: 694  LGANFIQSPADNTMFVKVSCTSIIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLG 753

Query: 131  ELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVC 190
              ++FLG+++ ++ EG  + Q KY + LL+   +     +  PM P   L KE  +    
Sbjct: 754  PARFFLGLEIARSSEGISVCQRKYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPN 813

Query: 191  QKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY 250
               YR ++G LLYL  +RPDI F+VH  ++F S P + H+ A  ++LRYLKG    GLMY
Sbjct: 814  ATSYRELVGRLLYLCITRPDITFAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMY 873

Query: 251  KKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISA 310
              +SE  L+G+ DAD+   +  R+S +G C +LG++L++W SK+QS ++ S+ E+EY S 
Sbjct: 874  SASSELCLNGFSDADWGTCKDSRRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSL 933

Query: 311  AICSTQMLWMKH*LEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDY 369
            A  + +++W++  L+D  + +     ++CDN +A+ L+ NP+ H R KHIE+  H +RD 
Sbjct: 934  AQATCEIIWLQQLLKDLHVTMTCPAKLFCDNKSALHLATNPVFHERTKHIEIDCHTVRDQ 993

Query: 370  VQKGVLLLKFVDTDHQWADIFTKPL 394
            ++ G L    V T +Q ADI TKPL
Sbjct: 994  IKAGKLKTLHVPTGNQLADILTKPL 1018


>At4g27210 putative protein
          Length = 1318

 Score =  289 bits (739), Expect = 2e-78
 Identities = 154/409 (37%), Positives = 243/409 (58%), Gaps = 6/409 (1%)

Query: 9    LSWRLR---M*SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYER 65
            L+W ++   + +AFL+G + E VY+ QP GF D  KPDHV  L KS+YGLKQ+PRAW+++
Sbjct: 814  LNWDIKQMDVKNAFLHGDLKETVYMTQPAGFVDPSKPDHVCLLHKSIYGLKQSPRAWFDK 873

Query: 66   LSSFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDD-IIFGSANQSLCKEFSEMMQAEF 124
             S+FLLE  F   K D +LF   + ++++++ +YVDD +I G+++Q+L    +  +  EF
Sbjct: 874  FSTFLLEFGFFCSKSDPSLFIYAHNNNLILLLLYVDDMVITGNSSQTLTSLLA-ALNKEF 932

Query: 125  EMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKED 184
             M+ MG+L YFLGIQV +   G ++ Q KY ++LL   +M   T   TP+          
Sbjct: 933  RMTDMGQLHYFLGIQVQRQQNGLFMSQQKYAEDLLIAASMEHCTPLPTPLPVQLDRVPHQ 992

Query: 185  KSGKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTT 244
            +        +R + G L YLT +RPDI F+V+   +    P  +    +KRILRY+KGT 
Sbjct: 993  EELFSDPTYFRSIAGKLQYLTLTRPDIQFAVNFVCQKMHQPTISDFHLLKRILRYIKGTI 1052

Query: 245  NLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAE 304
             +G+ Y + S   L  Y D+D+   +  R+S  G C F+G+NLVSW+SK+  T++ S+ E
Sbjct: 1053 TMGISYSRDSPTLLQAYSDSDWGNCKQTRRSVGGLCTFMGTNLVSWSSKKHPTVSRSSTE 1112

Query: 305  AEYISAAICSTQMLWMKH*LEDYQILESNIP-IYCDNTAAISLSKNPILHSRAKHIEVKY 363
            AEY S +  ++++LW+   L + +I   + P ++CDN +A+ L+ NP  H+R KH ++ +
Sbjct: 1113 AEYKSLSDAASEILWLSTLLRELRIPLPDTPELFCDNLSAVYLTANPAFHARTKHFDIDF 1172

Query: 364  HFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNMDFCP 412
            HF+R+ V    L++K +    Q ADIFTK L  + F  +   L +   P
Sbjct: 1173 HFVRERVALKALVVKHIPGSEQIADIFTKSLPYEAFIHLRGKLGVTLSP 1221


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  288 bits (738), Expect = 3e-78
 Identities = 152/393 (38%), Positives = 234/393 (58%), Gaps = 2/393 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            +AFL+G + EEVY+  PPGF     PD V +L+KSLYGLKQAPR W+++LS  LL   FV
Sbjct: 1103 NAFLHGDLEEEVYMKLPPGFR-HSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFV 1161

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
            +   D +LF  T  +  L V IYVDD++    +  + ++F + +   F M  +G+LKYFL
Sbjct: 1162 QSYEDYSLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFL 1221

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GI+V + PEG ++ Q KY  +++     L S  A TP+     L  +D       K YR 
Sbjct: 1222 GIEVSRGPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRR 1281

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
            ++G LLYL  +RP++ +SVH+ A+F  +PRE H  A  R++RYLKG+   G++     + 
Sbjct: 1282 LVGRLLYLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDL 1341

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
             L  YCD+D+      R+S S     LG + +SW +K+Q T++ S+AEAEY + +    +
Sbjct: 1342 TLEVYCDSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKE 1401

Query: 317  MLWMKH*LEDYQILESN-IPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
            + W++  L++  I +S    +YCD+ AAI ++ NP+ H R KHIE   H +RD V+ G++
Sbjct: 1402 IKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGII 1461

Query: 376  LLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 408
              + V T  Q AD+FTK L  ++F +++  L +
Sbjct: 1462 TTQHVRTTEQLADVFTKALGRNQFLYLMSKLGV 1494


>At3g25450 hypothetical protein
          Length = 1343

 Score =  286 bits (733), Expect = 1e-77
 Identities = 148/384 (38%), Positives = 240/384 (61%), Gaps = 1/384 (0%)

Query: 17   SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 76
            +AFL+G + E+VYV QP GF +++  + V+KL K+LYGL+QAPRAW  +L+  L E +F 
Sbjct: 931  TAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFE 990

Query: 77   RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFL 136
            +   + +L+ K   ++IL+V +YVDD++   +N  +   F + M  +FEMS +G+L Y+L
Sbjct: 991  KCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYL 1050

Query: 137  GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDKSGKVCQKLYRG 196
            GI+V Q+ +G  + Q +Y K++L++  M +     TPM  +  L K     ++ +  YR 
Sbjct: 1051 GIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRR 1110

Query: 197  MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 256
             IG L YL  +RPD+ ++V + +R+  +PRE+H  A+K+ILRYL+GTT+ GL +KK    
Sbjct: 1111 NIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENA 1170

Query: 257  KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 316
             L GY D+ +  D  + KST G+  +L    ++W S++Q  + LS+ EAE+++A   + Q
Sbjct: 1171 GLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQ 1230

Query: 317  MLWMKH*LEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYVQKGVL 375
             +W++  L +    E   + I  DN +AI+L+KNP+ H R+KHI  +YHFIR+ V+ G +
Sbjct: 1231 AIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQI 1290

Query: 376  LLKFVDTDHQWADIFTKPLAEDRF 399
             ++ V    Q ADI TK L + +F
Sbjct: 1291 EVEHVPGVRQKADILTKALGKIKF 1314


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,333,273
Number of Sequences: 26719
Number of extensions: 387998
Number of successful extensions: 1299
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 150
length of query: 413
length of database: 11,318,596
effective HSP length: 102
effective length of query: 311
effective length of database: 8,593,258
effective search space: 2672503238
effective search space used: 2672503238
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)