BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.9
         (56 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g12840 vacuolar ATP sythase subunit C (DET3)                        71  9e-14
At5g65110 acyl-CoA oxidase (gb|AAC13497.1)                             27  1.5
At4g02850 unknown protein                                              27  2.5
At2g23880 putative non-LTR retroelement reverse transcriptase          25  5.6
At4g24490 Rab geranylgeranyl transferase like protein (fragment)       25  9.6
At1g32390 hypothetical protein                                         25  9.6

>At1g12840 vacuolar ATP sythase subunit C (DET3)
          Length = 375

 Score = 71.2 bits (173), Expect = 9e-14
 Identities = 30/38 (78%), Positives = 35/38 (91%)

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +WVVSLPV +SAS LWNRLQ+ +SKHSFDTP+YRFNIP
Sbjct: 5  YWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIP 42


>At5g65110 acyl-CoA oxidase (gb|AAC13497.1)
          Length = 692

 Score = 27.3 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 1   GAVVWWVVSLPVHNSASELWNR--LQQNVSKHSFDTPLYRFNIPI 43
           GA+ WW+ +  VH   + ++ R  L  + SK   D  ++ F +PI
Sbjct: 218 GAIKWWIGNAAVHGKFATVFARLILPTHDSKGVSDMGVHAFIVPI 262


>At4g02850 unknown protein
          Length = 306

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 18/42 (42%), Positives = 22/42 (51%), Gaps = 4/42 (9%)

Query: 7  VVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP 48
          V  L   +   ++W  LQ   S+  FD PL  F IPI GSEP
Sbjct: 29 VCFLEEDHERDDVW--LQSMASE--FDLPLTCFLIPIPGSEP 66


>At2g23880 putative non-LTR retroelement reverse transcriptase
          Length = 1216

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 13/41 (31%), Positives = 21/41 (50%)

Query: 16  ASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP*TLSAMIS 56
           +SE+W  + +NV K  F T        IS S+P  + + +S
Sbjct: 840 SSEIWTSIAKNVYKDRFSTKWSAVVNYISDSQPDRIQSFLS 880


>At4g24490 Rab geranylgeranyl transferase like protein (fragment)
          Length = 661

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 26  NVSKHSFDTPLYRFNIPISGSE 47
           ++ KHS DT  Y  + P+S SE
Sbjct: 596 HIGKHSVDTTRYLCSSPLSNSE 617


>At1g32390 hypothetical protein
          Length = 192

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 16  ASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP*TLSAMIS 56
           +SE+W  + +NV K  F T        IS S+P  +   +S
Sbjct: 127 SSEIWTSIAKNVYKDGFSTDWSAVVNYISDSQPDCIQNFLS 167


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.327    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,188,551
Number of Sequences: 26719
Number of extensions: 32579
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 6
length of query: 56
length of database: 11,318,596
effective HSP length: 32
effective length of query: 24
effective length of database: 10,463,588
effective search space: 251126112
effective search space used: 251126112
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)