BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.8
         (105 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g02270 unknown protein                                             145  4e-36
At5g54130 putative protein                                            119  3e-28
At3g18660 unknown protein                                              27  1.3
At1g04020 unknown protein                                              26  3.8
At5g51660 cleavage and polyadenylation specificity factor subunit      25  4.9
At5g11350 unknown protein                                              25  8.4

>At1g02270 unknown protein
          Length = 484

 Score =  145 bits (365), Expect = 4e-36
 Identities = 68/104 (65%), Positives = 83/104 (79%), Gaps = 2/104 (1%)

Query: 2   YQILQYVESYQKENRFKSMSIVLCSDWNGSKLGHVYKFLRTQRFDSSYDTANKYIDSYAD 61
           Y+IL+Y+E+YQKEN+   M I+LC DWNGSK GHVYKFLR+Q F SSYD A++Y DS  D
Sbjct: 235 YKILEYLEAYQKENKLNHMPIILCGDWNGSKRGHVYKFLRSQGFISSYDDAHQYTDS--D 292

Query: 62  LHK*VSHRNPRGNICGVDFICIFNPNQALKPLKTSWAEAVLTII 105
            H+ VSHRN RGNICGVDFI + NP+ + KPL+TSW EAV +II
Sbjct: 293 AHRWVSHRNHRGNICGVDFIWLCNPSDSRKPLRTSWVEAVFSII 336


>At5g54130 putative protein
          Length = 232

 Score =  119 bits (298), Expect = 3e-28
 Identities = 58/82 (70%), Positives = 65/82 (78%), Gaps = 2/82 (2%)

Query: 20  MSIVLCSDWNGSKLGHVYKFLRTQRFDSSYDTANKYIDSYADLHK*VSHRNPRGNICGVD 79
           M I+LC DWNGSK GHVYKFLR+Q F SSYDTA++Y DS  D HK VSHRN RGNIC VD
Sbjct: 1   MPIILCGDWNGSKRGHVYKFLRSQGFVSSYDTAHRYTDS--DAHKWVSHRNHRGNICAVD 58

Query: 80  FICIFNPNQALKPLKTSWAEAV 101
           FI + NPN+  K LKTSW+EAV
Sbjct: 59  FIWLLNPNRYRKLLKTSWSEAV 80


>At3g18660 unknown protein
          Length = 655

 Score = 27.3 bits (59), Expect = 1.3
 Identities = 16/49 (32%), Positives = 26/49 (52%), Gaps = 2/49 (4%)

Query: 35  HVYKFLRT-QRFDSSYDTANKYIDSYADLHK*VSHRNPRGNICGVDFIC 82
           H + +LR+ Q+    YD       +YAD H  +  ++PR  IC +D +C
Sbjct: 568 HQFCYLRSKQKAQLEYDRRQAEAANYADGHWKIRVKDPRFKIC-IDKLC 615


>At1g04020 unknown protein
          Length = 714

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 27  DWNGSKLGHVYKFLRTQRFDSSYDTANKYIDSYAD-----LHK*VSHRNP----RGNICG 77
           DW   +L      L    F+S YD AN   +SY +     +    +   P    R  ICG
Sbjct: 163 DWTEKQLSD---HLLLYEFESEYDAANHTPESYTEQAAKNVRDITASEQPSNAARKRICG 219

Query: 78  VDFICIFNPN 87
             FI   +PN
Sbjct: 220 DSFIQESSPN 229


>At5g51660 cleavage and polyadenylation specificity factor subunit
          Length = 1448

 Score = 25.4 bits (54), Expect = 4.9
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 9/41 (21%)

Query: 24   LCSDWNGSKL---------GHVYKFLRTQRFDSSYDTANKY 55
            +   W G KL          HV KFLR Q   S  D  N++
Sbjct: 1299 MIESWKGLKLLSRAEFHVGAHVSKFLRLQMVSSGADKINRF 1339


>At5g11350 unknown protein
          Length = 754

 Score = 24.6 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 22  IVLCSDWNGSKLGHVYKFLRTQRFDSS 48
           IVLC D+N +    +Y F+  ++ D S
Sbjct: 367 IVLCGDFNCTPKSPLYNFISDRKLDLS 393


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.327    0.139    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,336,204
Number of Sequences: 26719
Number of extensions: 83110
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 6
length of query: 105
length of database: 11,318,596
effective HSP length: 81
effective length of query: 24
effective length of database: 9,154,357
effective search space: 219704568
effective search space used: 219704568
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)