BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0199.3
(462 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g12390 putative TNP1-like transposon protein 54 2e-07
At3g06910 unknown protein 45 6e-05
At4g15880 unknown protein 44 2e-04
At4g00690 hypothetical protein 42 0.001
At3g32950 TNP1-like protein 41 0.001
At3g29650 TNP1-like protein 41 0.001
At1g33570 En/Spm-like transposon protein, putative 40 0.002
At4g07760 putative transposon protein 40 0.003
At3g42230 putative protein 39 0.005
At5g33250 putative protein 38 0.010
At2g14970 En/Spm-like transposon protein 37 0.018
At2g10000 putative TNP1-like transposon protein 37 0.023
At4g08430 putative protein 37 0.030
At4g08060 putative protein 37 0.030
At1g25250 Indeterminate 1 like Zn finger containing protein 37 0.030
At1g41930 hypothetical protein 36 0.039
At4g09280 putative protein 35 0.067
At2g12220 En/Spm-like transposon protein 35 0.067
At5g45570 putative protein 35 0.11
At5g38230 putative protein 34 0.19
>At2g12390 putative TNP1-like transposon protein
Length = 984
Score = 53.5 bits (127), Expect = 2e-07
Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 34/287 (11%)
Query: 1 MRQELNDLRNLVHELMKNSGQAQKKADVQPGDSPCYSGEGSCPPSPVILPEGINACILYL 60
+++++N+L+ ++ E MKN Q+ A+V GE S S + C L
Sbjct: 654 LQKKVNELQEVI-EKMKNQRQS---AEV---------GENSAARS--VNKRTQPKCFLLD 698
Query: 61 ATPTHRKVASGTMYNNSIDTL-HSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTI 119
++ KVA G + ++ L + C L VKV ++ IE E + P N+FTI
Sbjct: 699 WAGSYAKVAEGCIISSDPGELVNDCRLGPTDVKVLIDTVIEPEAFLWRPA----ANMFTI 754
Query: 120 EDAIGTFVAWPKRL-VSTMTPASSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPV 178
E A+G +AWP + VS ++N TS A+G + ++A G+ ++ V
Sbjct: 755 EKAVGHMIAWPAAMCVSLEEDLQQEDNAGQTSAARGKSPLEAATLVGKFAASVGKSAGSV 814
Query: 179 AQGEKVHEQAKKQVDKGKKDVGQGKRAPGQAKKQADKGTEIQPLGASSKDKLQNCKFVWA 238
+ ++K V GK + A K + T ++ K K +
Sbjct: 815 GKS----AGSEKAVASGKAAASSSQTAAAGYKPSPEISTAKGTKSVATVSKAIAEKSIAK 870
Query: 239 YARSVLKSEDLLKIPMP---------ENILNTNTEEEFVEQIGEEQV 276
++S +K LL +P ++ N + + ++ G +QV
Sbjct: 871 GSKSPVKKSQLLDSQLPLSRSPHKGVAEVIKANQKCKLMDISGRKQV 917
>At3g06910 unknown protein
Length = 502
Score = 45.4 bits (106), Expect = 6e-05
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 345 FAPYNMGDHWVLLVIYTSEFAIEYFDSFDG-EPTDDVHMKNIFDAGLMIYHANSNDVPKK 403
F P +M HW L VI + +Y DSF G EP I DA + D +
Sbjct: 385 FIPIHMNIHWTLAVINIKDQKFQYLDSFKGREP-------KILDALARYFVDEVRDKSEV 437
Query: 404 KVKYIKWRK---MKCPKQKNLTDCGYYVLKYM 432
+ +WR+ P Q+N DCG +++KY+
Sbjct: 438 DLDVSRWRQEFVQDLPMQRNGFDCGMFMVKYI 469
>At4g15880 unknown protein
Length = 489
Score = 43.9 bits (102), Expect = 2e-04
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 345 FAPYNMGDHWVLLVIYTSEFAIEYFDSFDG-EPTDDVHMKNIFDAGLMIYHANSNDVPKK 403
F P + G HW L VI E + Y DS +G +P I +A +N+ K
Sbjct: 372 FVPIHRGVHWTLAVINNRESKLLYLDSLNGVDPM-------ILNALAKYMGDEANEKSGK 424
Query: 404 KVKYIKWRK---MKCPKQKNLTDCGYYVLKYM 432
K+ W P+QKN DCG ++LKY+
Sbjct: 425 KIDANSWDMEFVEDLPQQKNGYDCGMFMLKYI 456
>At4g00690 hypothetical protein
Length = 233
Score = 41.6 bits (96), Expect = 0.001
Identities = 36/114 (31%), Positives = 53/114 (45%), Gaps = 18/114 (15%)
Query: 343 VTFAPYNMGDHWVLLVIYTSEFAIEYFDS-FDGEP--TDDVHMKNIFDAGLMIYHANSND 399
+ F P ++ HW L VI E Y DS F G D+V K+ + D
Sbjct: 115 IIFVPIHIDIHWTLGVINNRERKFVYLDSLFTGAKYLVDEVKQKS----------QKNID 164
Query: 400 VPKKKVKYIKWRKMKCPKQKNLTDCGYYVLKYMRDIIIAGDSQTLQEVVILVIK 453
V ++Y++ R P+Q+N DCG ++LKY+ D G S +V+ VIK
Sbjct: 165 VSSWGMEYVEER----PQQQNGYDCGMFMLKYI-DFYSRGLSLQFSQVIRDVIK 213
>At3g32950 TNP1-like protein
Length = 787
Score = 41.2 bits (95), Expect = 0.001
Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 30/182 (16%)
Query: 81 LHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTIEDAIGTFVAWPKRLVSTMTPA 140
++ PL VKV V+ ++ E + P ++ +ED + +FVAWP VS
Sbjct: 535 VNGLPLGPAAVKVFVDVILQPETFIWRPTM----DVTYLEDCLQSFVAWPAHKVSYENTT 590
Query: 141 ----------SSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQA-K 189
SS + + S +KG +A +++ K E+ +G+ H + +
Sbjct: 591 DSAVQKAPLQSSQSTYPTASASKGKSAAASQQNGATEKSLGEKQQNGATKGKSGHNSSIQ 650
Query: 190 KQVDKGKKDVGQ-----GKRAPGQAKKQADKGTEI---QPLGASSKDKL-------QNCK 234
KG + G G++ P K K T++ PL S + K+ Q CK
Sbjct: 651 VSAAKGSESAGTIAKSLGEKQPTVVPKSPVKKTQLASQTPLRRSPRQKISEGLKANQKCK 710
Query: 235 FV 236
+
Sbjct: 711 LM 712
>At3g29650 TNP1-like protein
Length = 546
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 52 GINACILYLATPTHRKVASGTMYNNS-IDTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVP 110
G CIL ++VA G + ++ D +H PL + KV VE + G+ K + P
Sbjct: 464 GKQKCILLDINNFSQRVAEGKVCSSKPADVVHHVPLGQNASKVWVEVSKIGDAKVWRP-- 521
Query: 111 IEGGNIFTIEDAIGTFVAWP 130
I I DAIGT VAWP
Sbjct: 522 --NSEIQFISDAIGTIVAWP 539
>At1g33570 En/Spm-like transposon protein, putative
Length = 363
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/76 (35%), Positives = 38/76 (49%), Gaps = 5/76 (6%)
Query: 56 CILYLATPTHRKVASGTMY-NNSIDTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGG 114
CI+ +VA G + +N DT+H PL + KV VE + G+ + P
Sbjct: 285 CIMLDYKNGRERVAEGRVCASNPSDTVHHMPLGPNASKVCVEVSKIGDAAVWRP----NS 340
Query: 115 NIFTIEDAIGTFVAWP 130
I TI DA+G+ VAWP
Sbjct: 341 EIQTIADAVGSIVAWP 356
>At4g07760 putative transposon protein
Length = 783
Score = 40.0 bits (92), Expect = 0.003
Identities = 38/142 (26%), Positives = 63/142 (43%), Gaps = 12/142 (8%)
Query: 68 VASGTMYNNSIDTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTIEDAIGTFV 127
+A T N++ ++ PL VK+ V+ ++ E + P N+ +ED + +FV
Sbjct: 517 IACQTQEPNAL--VNGLPLGHVAVKIFVDAVLQPETFIWRPTM----NVTYLEDCLMSFV 570
Query: 128 AWPKRLVSTMTPASS--DNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVH 185
AWP V PA + + TS A+G + ++A G K A P + G+
Sbjct: 571 AWPVNKVIFENPADATYQKSPLQTSAARGKSPLEATTSVG--KSAASVGKSPGSLGKSA- 627
Query: 186 EQAKKQVDKGKKDVGQGKRAPG 207
++KK V GK + A G
Sbjct: 628 -RSKKAVASGKAAASGSQTAAG 648
Score = 35.8 bits (81), Expect = 0.051
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 20/131 (15%)
Query: 1 MRQELNDLRNLVHELMKNSGQAQKKADVQPGDSPCYSGEGSCPPSPVILPEGINACILYL 60
+++++N+++ ++ E MKN Q+ A+V GE S S + C L
Sbjct: 390 LQKKVNEIQEVI-EKMKNQRQS---AEV---------GENSAARS--VNKRTQPKCFLLD 434
Query: 61 ATPTHRKVASGTMYNNSIDTL-HSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTI 119
+ KVA G + ++ D L + C L VK ++ AIE E + N+F I
Sbjct: 435 WAGSDAKVAKGCIISSDPDELVNDCRLGPTDVKFLIDTAIEPEAFLWRLA----ANMFII 490
Query: 120 EDAIGTFVAWP 130
E A+G +AWP
Sbjct: 491 EKAVGHMIAWP 501
>At3g42230 putative protein
Length = 414
Score = 39.3 bits (90), Expect = 0.005
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 56 CILYLATPTHRKVASG-TMYNNSIDTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGG 114
CIL + +VA G M N + ++ PL + K+ +E A GE K + P
Sbjct: 336 CILLDCDDSGEEVAEGRVMSTNPTERVNFVPLGHNASKIMIEVAKIGEAKVWKP----NS 391
Query: 115 NIFTIEDAIGTFVAWPKRLV 134
I I DA+G+ VAWP +
Sbjct: 392 EIVCIADAVGSTVAWPNEKI 411
>At5g33250 putative protein
Length = 279
Score = 38.1 bits (87), Expect = 0.010
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 351 GDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKKVKY--- 407
G+HWV L I ++ I +DS TD MI S+ VP K+ +
Sbjct: 134 GNHWVALDIDLTKKRINVYDSISSLTTDTEMAIQCMFVMTMIAAMLSSFVPSKQRRQCRR 193
Query: 408 ----IKWRKM-KCPKQKNLTDCGYYVLKYMRDIII 437
++W+++ K P+ + DC Y +KY+ +++
Sbjct: 194 SYSKLEWKRITKVPENLDAGDCAIYSIKYIECLVL 228
>At2g14970 En/Spm-like transposon protein
Length = 771
Score = 37.4 bits (85), Expect = 0.018
Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 65/269 (24%)
Query: 1 MRQELNDLRNLVHE---------LMKNSGQAQKKADVQPGDSPCYSGEGSCPPSPVILPE 51
++Q++N+L+ ++ + LM + Q+++ A+V + +GS P
Sbjct: 416 LQQKVNELQEVIDKIKNHVNTCLLMHKANQSRQSAEVGETSAARSVNQGSQPK------- 468
Query: 52 GINACILYLATPTHRKVASGTMYNNSIDTL-HSCPLPSDHVKVSVEFAIEGEEKSYIPVP 110
CIL T V G + ++ D + + L VKV ++ AI E + P
Sbjct: 469 ----CILMDWAGTDATVVEGCIISSDPDEIVNGSRLGPTDVKVLIDTAIVPEAYLWRPAI 524
Query: 111 IEGGNIFTIEDAIGTFVAWPKRLVSTMT---------------PA--------------- 140
N+ +E A+G +AWP + ++ PA
Sbjct: 525 ----NMEIMEKAVGQMIAWPVAMCVSLEEKLNPEDIAQSFVAWPAHKVSYENTTDSAVQK 580
Query: 141 ----SSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQA-KKQVDKG 195
SS + + TS +KG +A +++ K E+ +G+ H + + KG
Sbjct: 581 APLQSSQSTYPTTSASKGKSAAASQQNGATEKSLGEKQQNGATKGKSGHNSSIQVSAAKG 640
Query: 196 KKDVGQ-----GKRAPGQAKKQADKGTEI 219
+ G G++ P K K T++
Sbjct: 641 SESAGTIAKSLGEKQPTVVPKSHVKKTQL 669
>At2g10000 putative TNP1-like transposon protein
Length = 531
Score = 37.0 bits (84), Expect = 0.023
Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 15/127 (11%)
Query: 81 LHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTIEDAIGTFVAWPKRLVSTMTPA 140
++ PL VKV V+ + + + P I +ED + FVAWP V P
Sbjct: 399 VNGLPLGPKAVKVFVDSVKQPDTSLWRPT----AEISYLEDCLMAFVAWPLSKVDFENP- 453
Query: 141 SSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQAKKQVDKGKKDVG 200
SS H +TS + + A + K A + A G K A K + K
Sbjct: 454 SSPTGHNSTS--------EVSRSASKAKSAATASKS--ADGSKTSATASKAASESKSAAM 503
Query: 201 QGKRAPG 207
K A G
Sbjct: 504 SSKSASG 510
Score = 32.3 bits (72), Expect = 0.56
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 20/131 (15%)
Query: 1 MRQELNDLRNLVHELMKNSGQAQKKADVQPGDSPCYSGEGSCPPSPVILPEGINACILYL 60
+++++NDL + + + +A+ GE S S + + C+
Sbjct: 236 LKKQVNDLEDEIIRIKNQRPEAEM-------------GENSAARS--VNRKSHRKCVFVD 280
Query: 61 ATPTHRKVASGTMYNNSIDTL-HSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTI 119
+ T V G + ++ D + + C L +KV VE A + + + P IF +
Sbjct: 281 WSETDENVGEGRILSSDPDDIVNDCRLGPTDLKVLVETAYQPDAFLWRPAH----KIFNM 336
Query: 120 EDAIGTFVAWP 130
++A+G +AWP
Sbjct: 337 KEAVGHIIAWP 347
>At4g08430 putative protein
Length = 808
Score = 36.6 bits (83), Expect = 0.030
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 351 GDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKK----VK 406
G+HWV L I + I +DS TD + MI S+ +P K+
Sbjct: 666 GNHWVALDIDLPKKRINVYDSIPSLTTDTEMVIQCMFVMTMIPAMLSSFIPSKQRRRSYS 725
Query: 407 YIKWRKM-KCPKQKNLTDCGYYVLKYM 432
++W+++ K P+ + DC Y +KY+
Sbjct: 726 KLEWKRITKIPENLDACDCAIYSIKYI 752
>At4g08060 putative protein
Length = 756
Score = 36.6 bits (83), Expect = 0.030
Identities = 34/155 (21%), Positives = 63/155 (39%), Gaps = 20/155 (12%)
Query: 81 LHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTIEDAIGTFVAWPKRLVSTMTPA 140
++ PL VKV V+ ++ E + P ++ +ED + +FVAWP VS
Sbjct: 513 VNGLPLGPAAVKVFVDVILQPETFIWRPTM----DVTYLEDCLQSFVAWPAHKVSYENTT 568
Query: 141 ----------SSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEKVHEQA-K 189
SS + + S +KG +A +++ K ++ +G+ H + +
Sbjct: 569 DSAVQKAPLQSSQSTYPTGSASKGKSAATSQQNGATEKSLGDKQQNGATKGKSGHNSSIQ 628
Query: 190 KQVDKGKKDVGQ-----GKRAPGQAKKQADKGTEI 219
KG + G G++ P K K T++
Sbjct: 629 VSAAKGSESAGTIAKSLGEKQPTVVPKSPVKKTQL 663
>At1g25250 Indeterminate 1 like Zn finger containing protein
Length = 385
Score = 36.6 bits (83), Expect = 0.030
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 172 ERANKPVAQGEKVHEQAKKQVDKGKKDVGQGKRAPGQAKKQADK 215
ERAN+ + E+ ++AK+Q++ +KD + KR +AK + +K
Sbjct: 286 ERANEEARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEK 329
>At1g41930 hypothetical protein
Length = 557
Score = 36.2 bits (82), Expect = 0.039
Identities = 29/117 (24%), Positives = 50/117 (41%), Gaps = 16/117 (13%)
Query: 79 DTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTIEDAIGTFVAWPK----RLV 134
D ++ C L VKV V+ A+ + + PV NI TIE IG +AWP L+
Sbjct: 145 DLVNDCRLGPSDVKVLVDTAMVPDTYLWRPVL----NICTIESVIGKMIAWPASKYVNLI 200
Query: 135 STMTP--------ASSDNNHKATSRAKGITAVQAKKPAGQVKKPAERANKPVAQGEK 183
P AS+ + + S A +++ + + V + + PV + ++
Sbjct: 201 YEQQPGDIAEEKAASTQQSSEGKSTASAQKSLETSQKSAVVSQKSSGPKSPVKKSQR 257
>At4g09280 putative protein
Length = 275
Score = 35.4 bits (80), Expect = 0.067
Identities = 27/97 (27%), Positives = 43/97 (43%), Gaps = 10/97 (10%)
Query: 351 GDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNI-----FDAGL--MIYHANSNDVPKK 403
G+HWV L + I+ +D GE TDD+ K + F + MI ++V
Sbjct: 141 GNHWVTLHVNLLRSHIDCYDCIVGEHTDDIDGKMLEVCRPFTRMIPQMINELFPSEVRTP 200
Query: 404 KVKYIKWR---KMKCPKQKNLTDCGYYVLKYMRDIII 437
+ +R K K P+ DCG Y LK + +++
Sbjct: 201 QYDQFSFRRRDKKKVPQNHIRGDCGVYALKILEYLLL 237
>At2g12220 En/Spm-like transposon protein
Length = 781
Score = 35.4 bits (80), Expect = 0.067
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 42/149 (28%)
Query: 79 DTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGGNIFTIEDAIGTFVAWPKRLV---- 134
D ++ C L +KV VE A + + P P N++TI +A+G +AWP
Sbjct: 546 DVVNDCRLGPVDLKVLVEAANTPDAFLWRPAP----NMYTITEAVGQMIAWPASKCVLVE 601
Query: 135 ----------------------------------STMTPASSDNNHKATSRAKGITAVQA 160
S++ P+ S + A +++ + +
Sbjct: 602 KDIEIEDIVPLAFISWPVHKVVFENLPSASGNQKSSLQPSGSASKSSAGAKSAASKSTSS 661
Query: 161 KKPAGQVKKPAERANKPVAQGEKVHEQAK 189
K A + P E AN P + +K ++++
Sbjct: 662 KSSASGSETPLENANAPSSTNQKTLQKSQ 690
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/77 (32%), Positives = 35/77 (44%), Gaps = 5/77 (6%)
Query: 56 CILYLATPTHRKVASGTMYNNSI-DTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGG 114
C L T R VA G N +H PL + VKV V+ + K + P
Sbjct: 703 CKLMDITGKKRVVAEGRWATNDPKQKVHFVPLGDNVVKVWVDIVKVSDVKVWRP----SD 758
Query: 115 NIFTIEDAIGTFVAWPK 131
+ +EDA+GT +AWP+
Sbjct: 759 EVEIMEDALGTAIAWPE 775
>At5g45570 putative protein
Length = 921
Score = 34.7 bits (78), Expect = 0.11
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 351 GDHWVLLVIYTSEFAIEYFDSFDGEPTDDVHMKNIFDAGLMIYHANSNDVPKKK----VK 406
G+HWV L I + + +DS TD MI S+ +P K+
Sbjct: 779 GNHWVALDIDLTNKRVNVYDSIPSLTTDTEMAIQCMFVMTMIPAMLSSFIPSKQRRRSYS 838
Query: 407 YIKWRKM-KCPKQKNLTDCGYYVLKYM 432
++W+++ K P+ + DC Y +KY+
Sbjct: 839 KLEWKRITKIPENLDPGDCAIYSIKYI 865
>At5g38230 putative protein
Length = 493
Score = 33.9 bits (76), Expect = 0.19
Identities = 26/76 (34%), Positives = 35/76 (45%), Gaps = 5/76 (6%)
Query: 56 CILYLATPTHRKVASGTMYN-NSIDTLHSCPLPSDHVKVSVEFAIEGEEKSYIPVPIEGG 114
C+L T VA G + + N D +H PL D KV V+ G K + P
Sbjct: 415 CMLLDCDGTGEIVAEGRVCSTNPEDKVHFIPLGPDARKVWVQVIKIGCAKVWRP----NS 470
Query: 115 NIFTIEDAIGTFVAWP 130
+ + DA+GT VAWP
Sbjct: 471 EVEFVSDALGTTVAWP 486
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,381,969
Number of Sequences: 26719
Number of extensions: 463879
Number of successful extensions: 1420
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 95
length of query: 462
length of database: 11,318,596
effective HSP length: 103
effective length of query: 359
effective length of database: 8,566,539
effective search space: 3075387501
effective search space used: 3075387501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0199.3