BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0199.2
(160 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05650 En/Spm-like transposon protein 93 5e-20
At2g12390 putative TNP1-like transposon protein 88 2e-18
At2g12220 En/Spm-like transposon protein 82 1e-16
At2g11580 pseudogene 80 4e-16
At4g07330 65 2e-11
At1g31560 putative protein 59 9e-10
At3g30790 hypothetical protein 57 6e-09
At3g32230 hypothetical protein 52 1e-07
At3g42210 putative protein 52 1e-07
At3g30680 hypothetical protein 51 2e-07
At1g35590 CACTA-element, putative 50 4e-07
At1g36470 hypothetical protein 48 2e-06
At4g08010 putative transposon protein 45 1e-05
At5g59640 serine/threonine-specific protein kinase - like 45 2e-05
At2g12990 En/Spm-like transposon protein 43 6e-05
At1g36480 hypothetical protein 41 3e-04
At5g30470 putative protein 32 0.11
At2g41060 putative RNA-binding protein 30 0.56
At5g01480 putative protein 30 0.73
At3g29784 hypothetical protein 30 0.73
>At2g05650 En/Spm-like transposon protein
Length = 531
Score = 93.2 bits (230), Expect = 5e-20
Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 11/163 (6%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+T D +T QN G+ A +M I+S+KD P+ +SY+G + I LDY +F +P+
Sbjct: 33 FHTVSIDRQT--QNCGMLHEATTMCIASSKDNTPMVDVVSYYGRVVDIILLDYNVFYIPI 90
Query: 62 FGCRWVDNNNGVRIDDLGFTQVDLN--RVGYKNDPFILASQAEQVFFVTDPADKKWSMVQ 119
F C+W + NGV+ +D GFT V+LN +V + DP+ILASQA+QVF+ W +
Sbjct: 91 FRCQWANIGNGVKEED-GFTLVNLNQSQVSFARDPYILASQAKQVFYSRADESSNWYVAM 149
Query: 120 LSNKINDNKDYDENQQKSVDKEDDPFKGI--SHSLDDDLIEDD 160
+ + Y +S + + P + +L DDL++DD
Sbjct: 150 RGS----TRRYSAEDAESGNADVGPLPVLVDMDALADDLVDDD 188
>At2g12390 putative TNP1-like transposon protein
Length = 984
Score = 87.8 bits (216), Expect = 2e-18
Identities = 51/116 (43%), Positives = 70/116 (59%), Gaps = 5/116 (4%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+T+ D +T QNSGV A ++ SSAKD V +SY+G I I LDY +F VP+
Sbjct: 133 FHTRTVDKKT--QNSGVYYEATAICRSSAKDTSQVVDLVSYYGCITDIILLDYNVFYVPL 190
Query: 62 FGCRWVDNNNGVRIDDLGFTQVDLN--RVGYKNDPFILASQAEQVFFVTDPADKKW 115
F C W NGV+ +D GFT V+LN +V + P+ILASQA+ VF++ + W
Sbjct: 191 FRCNWAVKGNGVKQED-GFTLVNLNHSQVSFLRGPYILASQAKHVFYLREDGSSPW 245
>At2g12220 En/Spm-like transposon protein
Length = 781
Score = 82.0 bits (201), Expect = 1e-16
Identities = 43/90 (47%), Positives = 57/90 (62%), Gaps = 3/90 (3%)
Query: 28 SSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPVFGCRWVDNNNGVRIDDLGFTQVDLN- 86
SSAKD V +SY+G + I LDY +F VP+F C+W NGV+++D GFT V+LN
Sbjct: 4 SSAKDTAQVVDLVSYYGTVTDIILLDYNVFYVPIFRCQWAVRGNGVKVED-GFTLVNLNH 62
Query: 87 -RVGYKNDPFILASQAEQVFFVTDPADKKW 115
+V + DPFILASQA+QVF+ W
Sbjct: 63 SQVSFLKDPFILASQAKQVFYSRVDDSSSW 92
>At2g11580 pseudogene
Length = 476
Score = 80.5 bits (197), Expect = 4e-16
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+T D +T QNSGV A ++ SS KD V +SY+G I I LDY +F P+
Sbjct: 30 FHTITVDKKT--QNSGVYYEATAICRSSGKDTSQVVDLVSYYGCITDIILLDYNVFYFPL 87
Query: 62 FGCRWVDNNNGVRIDDLGFTQVDLN--RVGYKNDPFILASQAEQVFFVTDPADKKW 115
F C W N V+ +D GFT V+LN + + DP+ILASQA+QVF++ + W
Sbjct: 88 FRCNWAVKGNEVKQED-GFTLVNLNHSQDSFLRDPYILASQAKQVFYLREDDSSPW 142
>At4g07330
Length = 318
Score = 64.7 bits (156), Expect = 2e-11
Identities = 43/146 (29%), Positives = 78/146 (52%), Gaps = 12/146 (8%)
Query: 4 TKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELD-YTIFQVPVF 62
TK + D T Q SGV + A++ +S+ D P +++Y+G + + EL+ Y +F+V +F
Sbjct: 80 TKRELDLKT-QYSGVYVAAETTSYASSCDSNPRTRTVAYYGNLIEVMELNNYEVFKVVLF 138
Query: 63 GCRWVDNN--NGVRIDDLGFTQVDLNRVGYKND-----PFILASQAEQVFFVTDPADKKW 115
C+W D + G +ID G V+ + + D P+ILA Q + V++V DP++ W
Sbjct: 139 KCKWADTHTKRGYKIDAYGHHMVNFLCLLHTGDNEEDVPYILAFQTKMVYYVQDPSETDW 198
Query: 116 SMVQLSNKINDNKDYDENQQKSVDKE 141
+++ I + YD + ++ E
Sbjct: 199 ---KIAFHIQPREIYDMGDSEQLNDE 221
>At1g31560 putative protein
Length = 1431
Score = 59.3 bits (142), Expect = 9e-10
Identities = 33/80 (41%), Positives = 48/80 (59%), Gaps = 3/80 (3%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+T+ + + QNSGV A ++ SSAKD V +SY+ + I LDY +F VP+
Sbjct: 702 FHTRSLERES--QNSGVYYEATTICRSSAKDTSQVVDLVSYYRTVTDIILLDYNVFYVPI 759
Query: 62 FGCRWVDNNNGVRIDDLGFT 81
F C+W NGV+++D GFT
Sbjct: 760 FRCQWAVRGNGVKVED-GFT 778
>At3g30790 hypothetical protein
Length = 953
Score = 56.6 bits (135), Expect = 6e-09
Identities = 34/91 (37%), Positives = 51/91 (55%), Gaps = 5/91 (5%)
Query: 36 VHGSMSYFGVIELIWELDYT---IFQVPVFGCRWVDN--NNGVRIDDLGFTQVDLNRVGY 90
V G ++G+I+ I E++Y + +F C W D + GVR ++LG V+ N+
Sbjct: 860 VEGETEFYGIIQQILEVEYPGLLNLKCVIFKCDWFDPVIDRGVRKNNLGVVDVNANKTYS 919
Query: 91 KNDPFILASQAEQVFFVTDPADKKWSMVQLS 121
K +PFILASQA QV F++ P + V LS
Sbjct: 920 KFEPFILASQARQVSFLSYPRVRSQREVWLS 950
>At3g32230 hypothetical protein
Length = 1169
Score = 52.4 bits (124), Expect = 1e-07
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 1 TFYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYT---IF 57
TF+T R N G+ + + G ++GV++ I E++Y
Sbjct: 968 TFHTYSHGSRRATTNYGIYVPS---------------GDSDFYGVLQQIIEVEYPGLLNL 1012
Query: 58 QVPVFGCRWVDNN--NGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQVFFVTDP 110
+ +F C W D GVR+++LG V+ NR K +P++LASQAEQV F+ P
Sbjct: 1013 KCILFKCDWYDPIIWRGVRVNNLGVVDVNANRRYGKFEPYVLASQAEQVSFLPYP 1067
>At3g42210 putative protein
Length = 173
Score = 52.0 bits (123), Expect = 1e-07
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 64 CRWVDNNNGVRIDDLGFTQVDL--NRVGYKNDPFILASQAEQVFFVTDPADKKWSMV 118
C W + NGV+ +D GFT V+L N+ + DP+ILASQA+QVF+ + WS+V
Sbjct: 65 CNWANKGNGVKEED-GFTLVNLHLNQSAFLKDPYILASQAKQVFYSVEDDSLPWSVV 120
>At3g30680 hypothetical protein
Length = 1116
Score = 51.2 bits (121), Expect = 2e-07
Identities = 47/165 (28%), Positives = 81/165 (48%), Gaps = 14/165 (8%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+T+ N GV + ++ SS D+ +G+++ VIEL +E ++ +
Sbjct: 918 FHTQTHGAGRKTCNYGVCVKGENYADSS--DEADFYGTLT--DVIELEYE-GIVNLRITL 972
Query: 62 FGCRWVDNN--NGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQVFFVTDPADKK----W 115
F C+W D G R + G V R K +PFILASQA+QV ++ P KK W
Sbjct: 973 FKCKWYDPKIGRGTRRNHGGVVDVLSTRKYNKYEPFILASQADQVCYIPYPYTKKPKNIW 1032
Query: 116 -SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIED 159
S+++++ + N + Y+ + EDD + + + +DL+ D
Sbjct: 1033 LSVLKVNPRGNISGQYENTDPTLLQTEDD--EAVLQTTIEDLVID 1075
>At1g35590 CACTA-element, putative
Length = 1180
Score = 50.4 bits (119), Expect = 4e-07
Identities = 47/165 (28%), Positives = 81/165 (48%), Gaps = 14/165 (8%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+T+ N GV + ++ SS D+ +G+++ VIEL +E ++ +
Sbjct: 982 FHTQTHGAGRKTCNYGVCVKGENYADSS--DEADFYGTLT--DVIELEYE-GIVNLRITL 1036
Query: 62 FGCRWVDNN--NGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQVFFVTDPADKK----W 115
F C+W D G R + G V R K +PFILASQA+QV ++ P KK W
Sbjct: 1037 FKCKWYDPKIGRGTRRNHGGVVDVLSTRKYNKYEPFILASQADQVCYIPYPYTKKPKNIW 1096
Query: 116 -SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIED 159
S+++++ + N + Y+ + EDD + + + +DL+ D
Sbjct: 1097 LSVLKVNPRGNISGQYENTDPTLLQTEDD--EPVLQTTIEDLVID 1139
>At1g36470 hypothetical protein
Length = 753
Score = 48.1 bits (113), Expect = 2e-06
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 42 YFGVIELIWELDY---TIFQVPVFGCRWVDNN--NGVRIDDLGFTQVDLNRVGYKNDPFI 96
++G + I EL+Y ++ +F C+W D G R G + R K +PFI
Sbjct: 587 FYGTLTDIIELEYEGIVNLRITLFKCKWYDPKIGRGTRRSHSGVVDILSTRKYNKYEPFI 646
Query: 97 LASQAEQVFFVTDPADKK----W-SMVQLSNKINDNKDYDENQQKSVDKEDD 143
L SQA+QV ++ P KK W ++++++ + N + +Y+ N + E+D
Sbjct: 647 LGSQADQVCYIPYPYTKKPKNIWLNVLKVNPRGNISGEYENNDPTLLQTEND 698
>At4g08010 putative transposon protein
Length = 270
Score = 45.4 bits (106), Expect = 1e-05
Identities = 44/166 (26%), Positives = 82/166 (48%), Gaps = 14/166 (8%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+TK R N GV + ++ SS D+ +G++ + +IEL +E ++ +
Sbjct: 71 FHTKNHGVRRKTCNYGVCVKRENYVDSS--DEADFYGTL--YDIIELQYE-GIVNLKITL 125
Query: 62 FGCRWVDN--NNGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQVFFVTDPADKK----W 115
F +W D G R G V +R K +PFILAS A+QV ++ P KK W
Sbjct: 126 FKYKWYDPVIGRGTRRSHGGVVDVLSSRKYNKYEPFILASHADQVCYIPYPYTKKPKSIW 185
Query: 116 -SMVQLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDDLIEDD 160
++++++ + N +Y+ N + ++D + + + +DL+ D+
Sbjct: 186 LNVLKVNPRGNIYGEYENNDPTLLQTKND--EAVLLTTIEDLVLDN 229
>At5g59640 serine/threonine-specific protein kinase - like
Length = 986
Score = 44.7 bits (104), Expect = 2e-05
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 42 YFGVIELIWELDY---TIFQVPVFGCRWVDNN--NGVRIDDLGFTQVDLNRVGYKNDPFI 96
++G++ I+EL Y +V VF C W D+ G+R + G ++ R + DPF+
Sbjct: 763 FYGILREIYELHYPGHVDLKVVVFKCDWYDSKVGRGIRRNKSGIIDINAKRHYEEYDPFV 822
Query: 97 LASQAEQVFFVTDPADKKWSMVQLSNKINDNKDYDENQQKSVD 139
LASQA+Q D S+V++ + + Y + Q + +D
Sbjct: 823 LASQADQ-------HDNDDSIVEVDSLQIETLSYLDAQPEDLD 858
>At2g12990 En/Spm-like transposon protein
Length = 209
Score = 43.1 bits (100), Expect = 6e-05
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 64 CRWVDN--NNGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQVFFVTDPADKKWSMVQLS 121
C W D + GVR ++LG V+ N+ K +PFILASQA QV F++ P + V LS
Sbjct: 68 CDWFDLVIDRGVRKNNLGVVDVNANKTYAKFEPFILASQAGQVSFLSYPRVRSQREVWLS 127
>At1g36480 hypothetical protein
Length = 334
Score = 40.8 bits (94), Expect = 3e-04
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 38 GSMSYFGVIELIWELDY---TIFQVPVFGCRWVDNN--NGVRIDDLGFTQVDLNRVGYKN 92
G ++GV+ I E+ Y + VF C D GVRI+ G V++ + K
Sbjct: 54 GEHDFYGVLREILEIHYHGPVHLHIVVFKCDRYDTTIGEGVRINRSGIIDVNVAKSYGKY 113
Query: 93 DPFILASQAEQVFFVTDPADKKWSMVQLSNKINDNKDYDE 132
DPFIL SQA+ +TD D+ ++DN+D +E
Sbjct: 114 DPFILVSQADHT--LTDLRDQ-------VEDLDDNEDEEE 144
>At5g30470 putative protein
Length = 398
Score = 32.3 bits (72), Expect = 0.11
Identities = 27/104 (25%), Positives = 47/104 (44%), Gaps = 7/104 (6%)
Query: 2 FYTKEQDDRTTMQNSGVTLIAQSMHISSAKDKKPVHGSMSYFGVIELIWELDYTIFQVPV 61
F+T+ N GV L ++ + A D + +++ +IEL +E ++ +
Sbjct: 154 FHTQSHGAGRKTCNYGVCLKGENY--TDASDAADFYANLT--DIIELEYE-GVVSLKITL 208
Query: 62 FGCRWVDNN--NGVRIDDLGFTQVDLNRVGYKNDPFILASQAEQ 103
F C W D G R + G V +R YK +PFIL + ++
Sbjct: 209 FKCSWYDPKLGRGTRRSNSGVVDVLSSRKYYKYEPFILGTYGKK 252
>At2g41060 putative RNA-binding protein
Length = 451
Score = 30.0 bits (66), Expect = 0.56
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 119 QLSNKINDNKDYDENQQKSVDKEDDPFKGISHSLDDD--LIEDD 160
+L ++ N+ + E QQ+ +KED + + + DDD ++E D
Sbjct: 6 KLESESNETSEPTEKQQQQCEKEDPEIRNVDNQRDDDEQVVEQD 49
>At5g01480 putative protein
Length = 413
Score = 29.6 bits (65), Expect = 0.73
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 5 KEQDDRTTMQNSGVTLIAQSMH-ISSAKDKKPVH 37
K++D + T + G+ I +S + IS+A+D+KPVH
Sbjct: 21 KDKDGKVTTISGGIHYIIKSSYFISNAEDEKPVH 54
>At3g29784 hypothetical protein
Length = 155
Score = 29.6 bits (65), Expect = 0.73
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 43 FGVIELIWELDYTIF---QVPVFGCRWVDNNNGVRI 75
+G++E I +L+Y F ++ +F C+W D+ G RI
Sbjct: 22 YGIVETIIKLEYPGFVNLKITLFYCQWFDSKVGKRI 57
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,894,834
Number of Sequences: 26719
Number of extensions: 162051
Number of successful extensions: 634
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 54
length of query: 160
length of database: 11,318,596
effective HSP length: 91
effective length of query: 69
effective length of database: 8,887,167
effective search space: 613214523
effective search space used: 613214523
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0199.2