BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.7
(263 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14400 putative retroelement pol polyprotein 78 4e-15
At4g03770 hypothetical protein 75 5e-14
At1g20390 hypothetical protein 72 2e-13
At3g31520 hypothetical protein 70 9e-13
At1g37180 hypothetical protein 67 1e-11
At1g41780 hypothetical protein 66 2e-11
At2g12870 putative retroelement pol polyprotein 65 3e-11
At2g15100 putative retroelement pol polyprotein 60 9e-10
At3g32290 hypothetical protein 57 1e-08
At2g15410 putative retroelement pol polyprotein 51 7e-07
At3g30655 hypothetical protein, 3' partial 50 1e-06
At1g37060 Athila retroelment ORF 1, putative 50 2e-06
At4g08050 49 3e-06
At1g41690 hypothetical protein 48 5e-06
At4g20490 putative protein 47 8e-06
At4g07640 putative athila transposon protein 46 2e-05
At3g30630 hypothetical protein 45 5e-05
At2g07480 F9A16.15 45 5e-05
At2g10670 pseudogene 44 7e-05
At1g38440 hypothetical protein 44 7e-05
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 78.2 bits (191), Expect = 4e-15
Identities = 52/201 (25%), Positives = 100/201 (48%), Gaps = 7/201 (3%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVII----AASDAVKCRMFPS 66
PF+ + S+ I D+ K L L+SY+G DPK +L F + A D C++F
Sbjct: 144 PFTPQITSLRIRDSRK-LNLESYNGLEDPKGYLAAFLIAAGRVDLNEADEDVRYCKLFSE 202
Query: 67 TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYV 126
A+ WFT L GSISNF + S FL Q+S ++ ++ DL+++ Q E+L+ ++
Sbjct: 203 NLCGQALMWFTQLEPGSISNFNELSVVFLKQYSILMDKSISDTDLWNLSQGPNETLRAFI 262
Query: 127 ARYSAASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMEEMRARASTYI-LDEE 184
++ K+ ++ A + GL L ++++ RA+ ++ +++E
Sbjct: 263 TKFKYVLSKLSRISQQSALSALRKGLWYDSRFKEDLILHKLDTIQDALFRANNWMEVEDE 322
Query: 185 DDAFKRKRAKLEKGDTSPEQR 205
++F ++ + + T P ++
Sbjct: 323 KESFAKRDKQAKPAVTFPPKK 343
>At4g03770 hypothetical protein
Length = 464
Score = 74.7 bits (182), Expect = 5e-14
Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 27/216 (12%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAAS-------DAVKCRM 63
PF+ + + I D K L ++ ++G SDPK HL F ++ +A + DA C +
Sbjct: 218 PFTHMISNAIISDPGK-LRIEYFNGSSDPKGHLKLF---IISVARAKFRPEERDAGLCHL 273
Query: 64 FPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLK 123
F K A+ WFT L S+ +F++ S+ FL Q+S + + DL+S+ QQ E L+
Sbjct: 274 FVEHLKGPALNWFTRLKGNSVDSFQELSTLFLKQYSVLIDPSTSDADLWSLSQQPNEPLR 333
Query: 124 EYVARYSAASVKVEDEEPRACALAFKNGL--------------LPGGLNSKLTRKPARSM 169
+++A++ + KVE A K L + GGL K
Sbjct: 334 DFLAKFRSTLAKVEGINDLAALSTLKKALCLRARLSAKFLAREIGGGLTIKDLEAEKGKT 393
Query: 170 EEMRARAS--TYILDEEDDAFKRKRAKLEKGDTSPE 203
E++ A A+ + KR R E D PE
Sbjct: 394 EQVNAVANPEQAAPAANSEGPKRGRGNREADDDEPE 429
>At1g20390 hypothetical protein
Length = 1791
Score = 72.4 bits (176), Expect = 2e-13
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 12/189 (6%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKM----VIIAASDAVKCRMFPS 66
PF+ + +V+I K + L+SY+G +DPK+ L FN + + I DA +C++F
Sbjct: 156 PFTRRITNVSIRGAQK-IKLESYNGRNDPKEFLTSFNVAINRAELTIDNFDAGRCQIFIE 214
Query: 67 TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYV 126
A WF+ L SI +F +S FL ++ + DL+SI Q ESL+ +V
Sbjct: 215 HLTGPAHNWFSRLKPNSIDSFHQLTSSFLKHYAPLIENQTSNADLWSISQGAKESLRSFV 274
Query: 127 ARYS--AASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMEEMRARASTYI-LD 182
R+ ++ V DE A +A +N + +T ++E+ RAS +I L+
Sbjct: 275 DRFKLVVTNITVPDE---AAIVALRNAVWYDSRFRDDITLHAPSTLEDALHRASRFIELE 331
Query: 183 EEDDAFKRK 191
EE RK
Sbjct: 332 EEKLILARK 340
>At3g31520 hypothetical protein
Length = 528
Score = 70.5 bits (171), Expect = 9e-13
Identities = 46/149 (30%), Positives = 76/149 (50%), Gaps = 11/149 (7%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAAS-------DAVKCRM 63
PF+ + + I D K L ++ ++G SDPK HL F ++ +A + DA C +
Sbjct: 226 PFTHRISNAIISDPGK-LRIEYFNGSSDPKRHLKSF---IISVARTKFRPEERDAGLCHL 281
Query: 64 FPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLK 123
F K A+ WF+ L S+ +F++ S+ FL Q+S + + DL+S+ QQ E L+
Sbjct: 282 FVEHLKGPALCWFSRLEGNSMDSFQELSTLFLKQYSVLIDLGTSDADLWSLSQQPNEPLR 341
Query: 124 EYVARYSAASVKVEDEEPRACALAFKNGL 152
+++A+ + KVE A A K L
Sbjct: 342 DFLAKLRSTLAKVEGINDVAALSALKKAL 370
>At1g37180 hypothetical protein
Length = 661
Score = 67.0 bits (162), Expect = 1e-11
Identities = 38/145 (26%), Positives = 64/145 (43%), Gaps = 5/145 (3%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAAS----DAVKCRMFPS 66
PF+ + + I + + L Y+G DP +HL F + + DA C++F
Sbjct: 298 PFTPRISKLRIRE-FRDFKLPVYNGKGDPNEHLTSFQVIVRRVPLEPYEEDAGLCKLFSE 356
Query: 67 TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYV 126
A+ WFT L GSI NF+ S+ F+ Q+ +T L+++ Q + L+ Y+
Sbjct: 357 NLSGPALTWFTQLEEGSIDNFKQLSTAFIKQYGYFIKSDITEAHLWNLSQSADDPLRTYI 416
Query: 127 ARYSAASVKVEDEEPRACALAFKNG 151
+ V++ A KNG
Sbjct: 417 IVFKEIMVQIPSLSDSTAQFALKNG 441
>At1g41780 hypothetical protein
Length = 246
Score = 66.2 bits (160), Expect = 2e-11
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIA----ASDAVKCRMFPS 66
PF+ + + AI+ + + L ++ +SG SDPK HL F + SDA C +F
Sbjct: 125 PFTRKISN-AIISDPEKLRIEYFSGSSDPKGHLKSFKISVARAKFKPEESDAGLCHLFVE 183
Query: 67 TFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYV 126
K + WF+ L S+ +F++ S+ FL Q+S + + DL+S+ QQ E L +++
Sbjct: 184 HLKGPVLDWFSRLEGNSVDSFQELSTLFLKQYSVLIDPGTSDVDLWSLSQQPNEPLSDFL 243
Query: 127 ARY 129
++
Sbjct: 244 TKF 246
>At2g12870 putative retroelement pol polyprotein
Length = 411
Score = 65.5 bits (158), Expect = 3e-11
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 14/191 (7%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVK--------CR 62
PF+ + S I D K L +D ++G S PK HL F +I AA D K C
Sbjct: 61 PFTRKISSAIISDPGK-LRIDYFNGSSYPKGHLKSF----IIYAARDKFKPEERDAGLCH 115
Query: 63 MFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESL 122
+F K + F L + +F + S+ FL QFS + +DL+S+ QQ E L
Sbjct: 116 LFVEHLKGPVLVLFLRLEGNFVDSFEELSTLFLKQFSVLIDPGTLDSDLWSLSQQPNEPL 175
Query: 123 KEYVARYSAASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMEEMRARASTYIL 181
+ + ++ + VE A A K L +L +++ + RAS Y+
Sbjct: 176 MDLLTKFRSTLASVEGIIDVAALSALKEALWYKSEFRKELNLSKPQTICDALHRASDYVS 235
Query: 182 DEEDDAFKRKR 192
EE+ KR
Sbjct: 236 HEEEMELLSKR 246
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 60.5 bits (145), Expect = 9e-10
Identities = 38/126 (30%), Positives = 58/126 (45%), Gaps = 13/126 (10%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAA--------SDAVKCR 62
PF+ + + I + + L Y+G D K+HL F +IA DA C+
Sbjct: 157 PFTPRISKLRIRE-FRDFKLPVYNGKGDLKEHLTSFQ----VIAGRVPLEPHEEDAGLCK 211
Query: 63 MFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESL 122
+F A+ WFT L GSI NF+ S+ F+ Q+ N +T L++ Q E L
Sbjct: 212 LFSENLFGLALTWFTQLEEGSIDNFKQLSTAFIKQYEYFINSDITEAHLWNFSQSADEPL 271
Query: 123 KEYVAR 128
+ Y+ R
Sbjct: 272 RTYIYR 277
>At3g32290 hypothetical protein
Length = 612
Score = 57.0 bits (136), Expect = 1e-08
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 11 PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAASDAVKCRMFPSTFKS 70
PF+ + + I D K L ++ ++G SDPK HL K II S
Sbjct: 164 PFTHMISNAIISDPGK-LRIEYFNGSSDPKGHL-----KSFII----------------S 201
Query: 71 TAMAWFTTLPR---GSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGESLKEYVA 127
A A F R S+ +F++ S+ FL Q+S + + DL+S+ QQ E L++++A
Sbjct: 202 VARAKFRQEERDAGNSVDSFQELSTLFLKQYSVLIDLGTSDADLWSLSQQPNEPLRDFLA 261
Query: 128 RYSAASVKVEDEEPRACALAFKNGL-LPGGLNSKLTRKPARSMEEMRARASTYILDEEDD 186
++ + KVE A A K L +L ++ + RAS Y+ EE+
Sbjct: 262 KFRSTLAKVEGINDVAALSALKKALWYKSEFRKELNLSKPLTIRDALHRASDYVSHEEEM 321
Query: 187 AFKRKRAKLEK 197
KR + K
Sbjct: 322 ELVAKRHEPSK 332
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 50.8 bits (120), Expect = 7e-07
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 2 EADSVAEFR---PFSEDVESVAILDNMKALVLDSYSGDSDPKDHLLYFNTKMVIIAASD- 57
E D V E PF+ + V I ++ + L +Y G DP+ L + + SD
Sbjct: 225 EVDKVLEETQRSPFTSCISDVRIR-HISKIKLANYEGLVDPRPFLTSVSIAIGRAHFSDE 283
Query: 58 ---AVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSI 114
A C++F A+ WF+ L SI + ++ FL + + + DL+++
Sbjct: 284 DRDAGSCQLFVKHLSGAALTWFSRLEANSIDSVHALTTSFLKNYGVFMEKGASNVDLWTM 343
Query: 115 RQQEGESLKEYVARYSAASVKVEDEEPRACALAFKNGLLPGGLNSKLTR--KPARSMEEM 172
Q ESL+ ++ R+ V + A A A +N L G +S+ T KP
Sbjct: 344 AQTAKESLRSFIGRFKEIVTSVATPDDAAIA-ALRNALWHGD-SSRCTTLCKPFHRQGSA 401
Query: 173 RA-------RASTYILDEEDDAFKRKRAKLEK------GDTSP 202
+A + + + DA K KL+K GDT+P
Sbjct: 402 KAPIAKEKPKEGHHESRQHYDADYAKEEKLKKGTSYYVGDTAP 444
>At3g30655 hypothetical protein, 3' partial
Length = 660
Score = 50.1 bits (118), Expect = 1e-06
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 38 DPKDHL-----LYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSS 92
DP DHL LY TK+ ++ D K R+FP + A W TLP+ SI+ + D
Sbjct: 61 DPLDHLDEFERLYGLTKINGVS-EDGFKLRLFPFSLGDKAHLWEKTLPQNSITAWDDCKK 119
Query: 93 KFLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARYSAASVK 135
FL +F +N N++ Q++ ES E R+ K
Sbjct: 120 AFLAKFFSNSRTARLRNEISGFTQKQNESFGEAWERFKGYQTK 162
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 49.7 bits (117), Expect = 2e-06
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 38 DPKDHLLYFNTKMVII----AASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
DP DHL F+ + + D K R+FP + A W +LP+GSI+++ D
Sbjct: 61 DPLDHLDEFDRLCSLTKINRVSEDGFKLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKA 120
Query: 94 FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARYSAASVKVEDEE 140
FL +F +N ND+ Q E+ E R+ + E
Sbjct: 121 FLAKFFSNSRTARLRNDISGFTQTNNETFYEAWERFKGYQTQCPHHE 167
>At4g08050
Length = 1428
Score = 48.9 bits (115), Expect = 3e-06
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 38 DPKDHLLYF----NTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
DP DHL F N + + D K R+FP + A W L SI+ + D+
Sbjct: 61 DPLDHLDEFDRLCNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLSHDSITTWDDYKKA 120
Query: 94 FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
FL +F +N N++Y Q+ GES E R+
Sbjct: 121 FLSKFFSNARTARLRNEIYGFSQKTGESFCEAWERF 156
>At1g41690 hypothetical protein
Length = 371
Score = 48.1 bits (113), Expect = 5e-06
Identities = 30/102 (29%), Positives = 44/102 (42%), Gaps = 4/102 (3%)
Query: 38 DPKDHLLYFNTKMVII----AASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
DP DHL F + + D K R+FP + A W TLP+GSI+ + D
Sbjct: 61 DPLDHLDEFERLCSLTKINGVSEDGFKLRLFPFSLGDKAHLWEKTLPQGSITTWDDCKKA 120
Query: 94 FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARYSAASVK 135
FL +F + N++ Q++ ES E R+ K
Sbjct: 121 FLAKFFSYSRTARLRNEISGFTQKQSESFCEAWERFKGYQTK 162
>At4g20490 putative protein
Length = 853
Score = 47.4 bits (111), Expect = 8e-06
Identities = 22/69 (31%), Positives = 37/69 (52%)
Query: 61 CRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSKFLVQFSANKNQPVTINDLYSIRQQEGE 120
C++F A+ F+ L SI NF S+ FL Q+ + +DL+S+ Q+ GE
Sbjct: 222 CQLFVEGLTGNALTCFSRLEANSIDNFTQLSTAFLKQYRVFIQPGASSSDLWSMTQENGE 281
Query: 121 SLKEYVARY 129
+L +Y+ R+
Sbjct: 282 TLNDYLGRF 290
>At4g07640 putative athila transposon protein
Length = 866
Score = 45.8 bits (107), Expect = 2e-05
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 38 DPKDHLLYF----NTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
DP DHL F N + ++D K R+FP + A W LP SI + D
Sbjct: 61 DPLDHLDEFDRLCNLTKINGVSADGFKLRLFPFSLGDKAHIWEKNLPHDSIITWDDCKKA 120
Query: 94 FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
FL +F +N N++ Q+ GES E R+
Sbjct: 121 FLSKFFSNARTARLRNEISGFSQKTGESFCEAWERF 156
>At3g30630 hypothetical protein
Length = 785
Score = 44.7 bits (104), Expect = 5e-05
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 38 DPKDHLLYF----NTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
D DHL F N V + D K R+FP A W +P SI + D
Sbjct: 61 DLLDHLDEFDRLCNLTKVNGVSEDGFKLRLFPFFLGDKAHIWEKNMPHDSIITWVDCKKA 120
Query: 94 FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
FL +F +N IN++ S Q+ GES E R+
Sbjct: 121 FLAKFFSNAKTARLINEISSFSQKTGESFCEAWERF 156
>At2g07480 F9A16.15
Length = 1012
Score = 44.7 bits (104), Expect = 5e-05
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 38 DPKDHLLYFNTKMVII----AASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
DP DHL F+ + + ++ K R+FP + A W TLP SI + D
Sbjct: 56 DPLDHLDNFDRLCSLTKINGVSEESFKLRLFPFSLGDKAHLWEKTLPVKSIDTWDDCKKA 115
Query: 94 FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARYSAASVKVEDEE 140
FL +F +N + +++ Q+ ES E R+ + + E
Sbjct: 116 FLAKFFSNSRKARLRSEISGFNQKNSESFSEAWERFKGYTTQCPHHE 162
>At2g10670 pseudogene
Length = 929
Score = 44.3 bits (103), Expect = 7e-05
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 38 DPKDHL-----LYFNTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSS 92
DP DHL L TK+ ++ D K R+FP + A W TLP+ SI+ + D
Sbjct: 93 DPLDHLDELERLCGLTKINGVS-EDGFKLRLFPFSLGDKAHLWEKTLPKNSITTWDDCKM 151
Query: 93 KFLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARYSAASVK 135
FL +F +N N++ ++ ES E R+ K
Sbjct: 152 AFLAKFFSNSRTARLRNEISGFTLKQNESFCEAWERFKGYQTK 194
>At1g38440 hypothetical protein
Length = 263
Score = 44.3 bits (103), Expect = 7e-05
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 38 DPKDHLLYF----NTKMVIIAASDAVKCRMFPSTFKSTAMAWFTTLPRGSISNFRDFSSK 93
DP DHL F N + + D K R+FP + A W LP SI+ + D
Sbjct: 14 DPLDHLDEFDRLYNLTKINGVSEDGFKLRLFPFSLGDKAHIWEKNLPHDSITTWDDCKKA 73
Query: 94 FLVQFSANKNQPVTINDLYSIRQQEGESLKEYVARY 129
FL +F +N N++ Q+ ES E R+
Sbjct: 74 FLSKFFSNARTARLRNEISGFSQKTSESFCEAWERF 109
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,432,081
Number of Sequences: 26719
Number of extensions: 224387
Number of successful extensions: 691
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 61
length of query: 263
length of database: 11,318,596
effective HSP length: 97
effective length of query: 166
effective length of database: 8,726,853
effective search space: 1448657598
effective search space used: 1448657598
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0192.7