BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0192.13
(1558 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04420 putative transposon protein 402 e-111
At2g05930 copia-like retroelement pol polyprotein 311 1e-84
At2g07080 putative gag-protease polyprotein 198 2e-50
At1g48710 hypothetical protein 197 3e-50
At3g61330 copia-type polyprotein 196 1e-49
At1g58140 hypothetical protein 196 1e-49
At1g32590 hypothetical protein, 5' partial 194 3e-49
At3g59720 copia-type reverse transcriptase-like protein 193 7e-49
At3g60170 putative protein 186 1e-46
At2g10610 pseudogene 183 8e-46
At3g25450 hypothetical protein 179 1e-44
At2g05960 putative retroelement pol polyprotein 177 3e-44
At2g05390 putative retroelement pol polyprotein 171 4e-42
At2g17490 putative retroelement pol polyprotein 170 5e-42
At2g15650 putative retroelement pol polyprotein 162 1e-39
At2g13930 putative retroelement pol polyprotein 161 2e-39
At2g12010 pseudogene 153 9e-37
At1g26990 polyprotein, putative 151 3e-36
At2g07550 putative retroelement pol polyprotein 146 1e-34
At2g11230 putative retroelement pol polyprotein 141 3e-33
>At4g04420 putative transposon protein
Length = 1008
Score = 402 bits (1032), Expect = e-111
Identities = 259/797 (32%), Positives = 414/797 (51%), Gaps = 91/797 (11%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M A ++ + + W + WK PV ++G LK +++W E+ +A NS+AL+ I
Sbjct: 28 MRALIRGLGKEAWIATSIGWKAPVIKGEDGEDV--LKTKDQWNDAEEAKAKANSRALSLI 85
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FN V++N F+ I C AK+AW+ L A+EGT+ V+ SR+ +L +QFENL M+E E + E
Sbjct: 86 FNFVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLSMEETENIEE 145
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGS 180
F K+ +A+ + LG+ ++KLV+K+LR L RF+ K TA+ + D +I +E++G
Sbjct: 146 FSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDTDSIDFEEVVGM 205
Query: 181 LQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRK 240
LQ +E+ + +K +A ++ +++ E L + ++++ + F++ MRR ++K
Sbjct: 206 LQAYELEITSGKGGYSKGLALAASAKKNEIQE------LKDTMSMMAKDFSRAMRRVEKK 259
Query: 241 YRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGK-- 298
+N G D+ D+S K +QCHEC+GYGHI++EC + +K K
Sbjct: 260 ----------GFGRNQGT---DRYRDRSSKRDEIQCHECQGYGHIKAECPSLKRKDLKCS 306
Query: 299 ---GMVATWSD------------------DDSEEEEEPQIMGLTG----------KCNSE 327
G+ T D D ++ + E I G +SE
Sbjct: 307 ECNGLGHTKFDCVGSKSKPDKSCSSESESDSNDGDSEDYIKGFVSFVGIIEEKDESSDSE 366
Query: 328 ADSSDGEISEEE---------LAESYKLLLNKW-----EDACEMGKKL--DETVKNLKAE 371
AD D + S +E + E ++ L + W E + +KL E + LK E
Sbjct: 367 ADGEDEDNSADEDSDIEKDVNINEEFRKLYDSWLMLSKEKVAWLEEKLKVQELTEKLKGE 426
Query: 372 ------KQNLLITNGNLQEEIIM-LK*KIEGMIKSVRMLNKGTDVFDLILEAGKEAKGRT 424
K + LI ++ EE L ++ K++ MLN GT D IL AG+ K
Sbjct: 427 LTAANQKNSELIQKCSVAEEKNRELSQELSDTRKNIHMLNSGTKDLDSILAAGRVGKSNF 486
Query: 425 GLGYTD-NSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSYPLSQKEIN 483
GLGY SGT+ + + PT +T F + ++Y+ + + S++ +
Sbjct: 487 GLGYNGAGSGTKTNFVRSEAAAPTKSQTGFRSNYDAVP--ARRVYQN--HDHYQSRRTVT 542
Query: 484 SRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGR---KWQPKNNVTALVAYTSL 540
+ C++CG+HGHI+ YCYR K K +GR + + ++ VAYTS+
Sbjct: 543 G-YECYYCGRHGHIQRYCYRYAARLNKLKRQGKLYPYQGRTSKMYVRREDLYCHVAYTSI 601
Query: 541 RASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRL 600
K+ YFDSG SRHM G + LE+ S VTFG G K KIKG G + ++ P+L
Sbjct: 602 EEGIKKPWYFDSGASRHMVGSQSNLENYTSVKESKVTFGGGDKRKIKGKGDLTKAEKPQL 661
Query: 601 TDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLS 660
T+V VEGLTANLIS+SQLCD L VSF V C T+E + + G+R+ +NCYMW
Sbjct: 662 TNVYFVEGLTANLISVSQLCDEGLTVSFNSVKCWATNEKNQNTLTGVRTGNNCYMWEEPK 721
Query: 661 KGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGK 720
+CL +++E+ +WH++LGH+N +SM +I++KE +RG+ +LK E V GK
Sbjct: 722 -----ECLRAEKEDPVVWHQRLGHMNARSMSEIVSKEMVRGVQELKHIEKIVYDAYNQGK 776
Query: 721 QTQAPYKKLTHIATSKS 737
Q + +K++ + K+
Sbjct: 777 QIRVQHKRVVGVVERKN 793
>At2g05930 copia-like retroelement pol polyprotein
Length = 916
Score = 311 bits (798), Expect = 1e-84
Identities = 227/772 (29%), Positives = 352/772 (45%), Gaps = 145/772 (18%)
Query: 1 MIAFLKSIDSKTWKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAI 60
M A ++ + + W + WK PV ++G LK E++W E+ +A NS+AL+ I
Sbjct: 40 MRALIRGLGKEAWIATSIGWKAPVIKGEDGEDV--LKTEDQWNDAEEAKATANSRALSLI 97
Query: 61 FNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFE 120
FN V++N F+ I C AK+AW+ L A+EGT+ V+ SR+ +L +QFENL M+E E + E
Sbjct: 98 FNSVNQNQFKQIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFENLTMEETENIEE 157
Query: 121 FHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAI-EEAQDIGNIIVDELIG 179
F K++AI EA ++G D+ +
Sbjct: 158 -----------------------------------FSGKISAIASEAHNLGKKYKDKKL- 181
Query: 180 SLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDR 239
++ L R E K ++ +T D F +V+ F
Sbjct: 182 -VKKLLRCLPSRFESKRTAMGTSLDTNSID--------------------FEEVVGMFQA 220
Query: 240 KYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKG 299
+ +I G K E S+K K ++C EC+G GHI+ +C K +
Sbjct: 221 Y--------ELEITSGKGGYGHIKAECPSLKRKDLKCSECKGLGHIKFDCVGSKSKPDRS 272
Query: 300 MVATWSDDDSEEEEEPQIMGLTG----------KCNSEADSSDGEISEEE---------L 340
+ D ++ + E I G +SEAD D + S +E +
Sbjct: 273 CSSESESDSNDGDSEDYIKGFVSFVGIIEEKDESSDSEADGEDEDNSADEDSDIEKDVKI 332
Query: 341 AESYKLLLNKW-----EDACEMGKKL--DETVKNLKAEKQNLLITNGNLQEEIIMLK*K- 392
E ++ L + W E + +KL E + LK E N L ++ + + K
Sbjct: 333 NEEFRKLYDSWLMLSKEKVAWLEEKLKVQELTEKLKGELTAANQKNSELTQKCSVAEEKN 392
Query: 393 ------IEGMIKSVRMLNKGTDVFDLILEAGKEAKGRTGLGYTD-NSGTEESKKITNTFI 445
+ K + MLN GT D IL AG+ K GLGY SGT+ + +
Sbjct: 393 RELSQELSDTRKKIHMLNSGTKDLDSILAAGRVGKSNFGLGYNGVGSGTKTNFVRSEAGA 452
Query: 446 PTAKKTEFTKTNQVIQHNTPQIYRQMPYSYPLSQKEINSRWRCHHCGKHGHIRPYCYRLY 505
PT +T F + ++Y+ + + S++ + + C++CG+HGH R
Sbjct: 453 PTKSQTGFRSNYDAVPAR--RMYQNHDHYH--SRRTVTG-YECYYCGRHGHFRDIA---- 503
Query: 506 RTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKEDRYFDSGCSRHMTGVKMYL 565
AYTS+ K+ YFDSG SRHMTG + L
Sbjct: 504 -----------------------------TAYTSIEEGIKKPWYFDSGASRHMTGSQSNL 534
Query: 566 EHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLTANLISISQLCDLDLN 625
E+ S VTFG G KGKIKG G + ++ P+LT+V VEGLTANLIS+SQLCD L
Sbjct: 535 ENYTSVKESKVTFGGGDKGKIKGKGDLTKAEKPQLTNVYFVEGLTANLISVSQLCDEGLT 594
Query: 626 VSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWHKKLGHL 685
VSF V C T+E + + G+R+ +NCYMW +CL++++E+ +WH++LGH+
Sbjct: 595 VSFNSVKCWATNEKNQNTLTGVRTGNNCYMWEEPK-----ECLIAEKEDRVVWHQRLGHM 649
Query: 686 NPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKS 737
N +SM +I++KE +RG+ +LK E V GKQ + +K++ + K+
Sbjct: 650 NARSMSEIVSKEMVRGVQELKHIEKIVYDAYNQGKQIRVQHKRVVGVVERKN 701
>At2g07080 putative gag-protease polyprotein
Length = 627
Score = 198 bits (504), Expect = 2e-50
Identities = 148/532 (27%), Positives = 258/532 (47%), Gaps = 68/532 (12%)
Query: 24 VKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLINTCTVAKDAWE 83
++ ++G T KP+ WT EE ++ N++A+ AIFNGVD++ F+LI C AK AW+
Sbjct: 32 IRGQEDGFKIT--KPKANWTAEEKLQSKFNARAMKAIFNGVDEDEFKLIQGCKSAKQAWD 89
Query: 84 ILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEK 143
L+ +HEGT+ V+ +RL + TQFE LKM+ +E + +F K+ +AN + +G+ ++K
Sbjct: 90 TLQKSHEGTSSVKRTRLDHIATQFEYLKMEPDEKIVKFSSKISALANEAEVMGKTYKDQK 149
Query: 144 LVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERSEKKNKSIAFVS 203
LV+K+LR L +F + A + I +L+G L+ EM ++ K +K+IAF +
Sbjct: 150 LVKKLLRCLPPKFAAHKAVMRVAGNTDKISFVDLVGMLKLEEMKADQDKVKPSKNIAFNA 209
Query: 204 NTVDDDLSEKE*DENLSEAITLLGRKFNKVMR-----------RFDRKYRPNVTNKQSDI 252
+ + E + + + LL R F K ++ RF R ++ K+
Sbjct: 210 DQGSEQFQE------IKDGMALLARNFGKALKRVEIDGERSRGRFSRSENDDLRKKKEIQ 263
Query: 253 IKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKGMVATWSDDDSEEE 312
G K E K K ++C +C+G GH + EC K + K ++ ++SD +S++E
Sbjct: 264 CYECGGFGHIKPECPITKRKEMKCLKCKGVGHTKFECPNKSKLKEKSLI-SFSDSESDDE 322
Query: 313 EEPQIMGLTGKCNSEA----DSSDGEISEE-ELAESYKLLLNKW----EDACEMGKK--- 360
E + + +S++ +D + EE + Y++L + W +D ++ K+
Sbjct: 323 GEELLNFVAFMASSDSSKFMSDTDSDCDEELNPKDKYRVLYDSWVQLSKDKLKLVKEKLT 382
Query: 361 LDETVKNLKAE-KQNL--LITNGNLQ------------------EEIIMLK*KIEGMIKS 399
L+ + N+ E KQ L + +GN Q + +L+ ++ K
Sbjct: 383 LEAKLANVSTEDKQKLSGITVDGNSQDYYQKKLDCLQKECHRERDRTKLLERELNDKYKQ 442
Query: 400 VRMLNKGTDVFDLILEAGKEAKGRTGLGYTDNSG--TEESKKITNTFIPTAKKTEFTKTN 457
+RMLNKG + D IL G+ + GLGY +G +E ++ N F+ +E
Sbjct: 443 IRMLNKGLESLDKILAMGRTDSQQRGLGYQGYTGKIKKEEGRVIN-FVSGGSTSETVVRQ 501
Query: 458 QVIQHNTPQIYRQMPYSYPLSQKEINSRWR------CHHCGKHGHIRPYCYR 503
I+ ++ S+ ++E R R C HCGK H+R CY+
Sbjct: 502 SYIEP------KKQVKSHVEIKRESVVRTRMVGVICCDHCGKRFHMREQCYK 547
>At1g48710 hypothetical protein
Length = 1352
Score = 197 bits (502), Expect = 3e-50
Identities = 113/367 (30%), Positives = 187/367 (50%), Gaps = 20/367 (5%)
Query: 487 RCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKE 546
+C++CGK GH C P+ K K + K ++ S + +E
Sbjct: 280 KCYNCGKFGHYASECKA---------PSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQE 330
Query: 547 DR---YFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV----NSDSPR 599
+ Y DSG S HM G K + V GD +K ++KG G I+ N D
Sbjct: 331 ENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQF 390
Query: 600 LTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPL 659
+++V + + N++S+ QL + ++ + D+ ++ S + ++ +
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLN-- 448
Query: 660 SKGLITKCL-VSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQI 718
+ I +CL + +EE+ LWH + GHLN ++ + KE +RGLP + +VC C +
Sbjct: 449 IRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLL 507
Query: 719 GKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAE 778
GKQ + + K + KSLEL+H D+ GP++ +S G Y + +DDFSR TWV F+ E
Sbjct: 508 GKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
Query: 779 KSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQ 838
KS+ FE+F++ +++E G I +RSD G EF + +F +YC GI+ + + P + QQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627
Query: 839 NGVVEKK 845
NGV E+K
Sbjct: 628 NGVAERK 634
Score = 115 bits (289), Expect = 2e-25
Identities = 84/304 (27%), Positives = 151/304 (49%), Gaps = 24/304 (7%)
Query: 13 WKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLI 72
W+ + K + P + EG+ + K +++ D+ KAL I+ G+D++ F +
Sbjct: 35 WEIVEKGFIEP---ENEGSLSQTQKDGLRDSRKRDK------KALCLIYQGLDEDTFEKV 85
Query: 73 NTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANAS 132
T AK+AWE LR +++G +V+ RLQ L +FE L+MKE E V ++ +V + N
Sbjct: 86 VEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNL 145
Query: 133 FALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERS 192
GE + + +++ K+LRSL +F+ VT IEE +D+ + +++L+GSLQ +E
Sbjct: 146 KRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYE------- 198
Query: 193 EKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRKYRP---NVTNKQ 249
EKK K + ++ ++++E ++ R + R +RP N +
Sbjct: 199 EKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRG 258
Query: 250 SDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKGMVATWSDDDS 309
+ + G DKS V+C+ C +GH SEC K+ + A + ++
Sbjct: 259 ENSSRGRGKGHPKSRYDKSS----VKCYNCGKFGHYASECKAPSNKKFEEK-ANYVEEKI 313
Query: 310 EEEE 313
+EE+
Sbjct: 314 QEED 317
>At3g61330 copia-type polyprotein
Length = 1352
Score = 196 bits (497), Expect = 1e-49
Identities = 112/367 (30%), Positives = 187/367 (50%), Gaps = 20/367 (5%)
Query: 487 RCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKE 546
+C++CGK GH C P+ K K + K ++ S + ++
Sbjct: 280 KCYNCGKFGHYASECKA---------PSNKKFEEKAHYVEEKIQEEDMLLMASYKKDEQK 330
Query: 547 DR---YFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV----NSDSPR 599
+ Y DSG S HM G K + V GD +K ++KG G I+ N D
Sbjct: 331 ENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQF 390
Query: 600 LTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPL 659
+++V + + N++S+ QL + ++ + D+ ++ S + ++ +
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLN-- 448
Query: 660 SKGLITKCL-VSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQI 718
+ I +CL + +EE+ LWH + GHLN ++ + KE +RGLP + +VC C +
Sbjct: 449 IRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLL 507
Query: 719 GKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAE 778
GKQ + + K + K LEL+H D+ GP++ +S G Y + +DDFSR TWV F+ E
Sbjct: 508 GKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
Query: 779 KSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQ 838
KS+ FE+F++ +++E G I +RSD G EF + +F +YC GI+ + + P + QQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627
Query: 839 NGVVEKK 845
NGVVE+K
Sbjct: 628 NGVVERK 634
Score = 114 bits (285), Expect = 4e-25
Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 23/280 (8%)
Query: 13 WKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLI 72
W+ + K + P + EG+ + K +++ D+ KAL I+ G+D++ F +
Sbjct: 35 WEIVEKGFIEP---ENEGSLSQTQKDGLRDSRKRDK------KALCLIYQGLDEDTFEKV 85
Query: 73 NTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANAS 132
T AK+AWE LR +++G +V+ RLQ L +FE L+MKE E V ++ +V + N
Sbjct: 86 VEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNL 145
Query: 133 FALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERS 192
GE + + +++ K+LRSL +F+ VT IEE +D+ + +++L+GSLQ +E
Sbjct: 146 KRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYE------- 198
Query: 193 EKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRKYRP---NVTNKQ 249
EKK K ++ ++++E ++ R + R +RP N +
Sbjct: 199 EKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRG 258
Query: 250 SDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSEC 289
+ + G DKS V+C+ C +GH SEC
Sbjct: 259 ENSSRGRGKGHPKSRYDKSS----VKCYNCGKFGHYASEC 294
>At1g58140 hypothetical protein
Length = 1320
Score = 196 bits (497), Expect = 1e-49
Identities = 112/367 (30%), Positives = 186/367 (50%), Gaps = 20/367 (5%)
Query: 487 RCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKE 546
+C++CGK GH C P+ K K + K ++ S + +E
Sbjct: 280 KCYNCGKFGHYASECKA---------PSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQE 330
Query: 547 DR---YFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV----NSDSPR 599
+ Y DSG S HM G K + V GD +K ++KG G I+ N D
Sbjct: 331 ENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQF 390
Query: 600 LTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPL 659
+++V + + N++S+ QL + ++ + D+ ++ S + ++ +
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLN-- 448
Query: 660 SKGLITKCL-VSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQI 718
+ I +CL + +EE+ LWH + GHLN ++ + KE +RGLP + +VC C +
Sbjct: 449 IRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLL 507
Query: 719 GKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAE 778
GKQ + + K + K LEL+H D+ GP++ +S G Y + +DDFSR TWV F+ E
Sbjct: 508 GKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
Query: 779 KSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQ 838
KS+ FE+F++ +++E G I +RSD G EF + +F +YC GI+ + + P + QQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627
Query: 839 NGVVEKK 845
NGV E+K
Sbjct: 628 NGVAERK 634
Score = 116 bits (290), Expect = 1e-25
Identities = 85/304 (27%), Positives = 151/304 (48%), Gaps = 24/304 (7%)
Query: 13 WKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLI 72
W+ + K + P + EG+ + K +++ D+ KAL I+ G+D++ F +
Sbjct: 35 WEIVEKGFIEP---ENEGSLSQTQKDGLRDSRKRDK------KALCLIYQGLDEDTFEKV 85
Query: 73 NTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANAS 132
T AK+AWE LR +++G +V+ RLQ L +FE L+MKE E V ++ +V + N
Sbjct: 86 VEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNL 145
Query: 133 FALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERS 192
GE + + +++ K+LRSL +F+ VT IEE +D+ + +++L+GSLQ +E
Sbjct: 146 KRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYE------- 198
Query: 193 EKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRKYRP---NVTNKQ 249
EKK K V ++ ++++E ++ R + R +RP N +
Sbjct: 199 EKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRG 258
Query: 250 SDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKGMVATWSDDDS 309
+ + G DKS V+C+ C +GH SEC K+ + A + ++
Sbjct: 259 ENSSRGRGKGHPKSRYDKSS----VKCYNCGKFGHYASECKAPSNKKFEEK-ANYVEEKI 313
Query: 310 EEEE 313
+EE+
Sbjct: 314 QEED 317
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 194 bits (493), Expect = 3e-49
Identities = 119/388 (30%), Positives = 189/388 (48%), Gaps = 23/388 (5%)
Query: 488 CHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKED 547
C C K GH + C W+ V M+ ++ + + K+
Sbjct: 212 CFKCHKMGHYKAEC-------PSWEKEANYVEME-------EDLLLMAHVEQIGDEEKQI 257
Query: 548 RYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKI---VNSDSPRLTDVL 604
+ DSGCS HM G + + + V GD + ++G GK+ V+ ++DV
Sbjct: 258 WFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISDVY 317
Query: 605 LVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDN--CYMWSPLSKG 662
V GL NL S+ QL L C V + E+ +++ N +++ + K
Sbjct: 318 FVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKS 377
Query: 663 LIT---KCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKI-EEGKVCGECQI 718
T +CL + +WHK+ GHLN + ++ + KE ++GLPK + EE VC C
Sbjct: 378 KETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLK 437
Query: 719 GKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAE 778
GKQ + K + +++ L+L+H D+ GP+ S GKRY+ +DDFSR W ++E
Sbjct: 438 GKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSE 497
Query: 779 KSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQ 838
KS+TF+ F+E +++RE G +V +RSD G E+ + +F EYC + GIK + +A T QQ
Sbjct: 498 KSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQ 557
Query: 839 NGVVEKKTGLCKNLQG*CFMQRKFPTIF 866
NGV E+K N+ M+ P F
Sbjct: 558 NGVAERKNRSVMNMTRCMLMEMSVPRKF 585
Score = 91.7 bits (226), Expect = 3e-18
Identities = 51/142 (35%), Positives = 82/142 (56%)
Query: 48 EEALGNSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQF 107
E+ + + K N +F +DK + + I +KD WE ++ ++G RV+ ++LQ L F
Sbjct: 20 EKTVKDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSF 79
Query: 108 ENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQ 167
E L+MK ET+ + +V ++ N LGE M + K+V KILR+L ++F V AIEE+
Sbjct: 80 EVLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESN 139
Query: 168 DIGNIIVDELIGSLQTFEMSLN 189
+I + VD L SL E +L+
Sbjct: 140 NIKELTVDGLQSSLMVHEQNLS 161
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 193 bits (490), Expect = 7e-49
Identities = 111/367 (30%), Positives = 185/367 (50%), Gaps = 20/367 (5%)
Query: 487 RCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKE 546
+C++CGK GH C P+ K K + K ++ S + +E
Sbjct: 280 KCYNCGKFGHYASECKA---------PSNKKFKEKANYVEEKIQEEDMLLMASYKKDEQE 330
Query: 547 DR---YFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV----NSDSPR 599
+ Y DSG S HM G K + V GD +K ++KG G I+ N D
Sbjct: 331 ENHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQF 390
Query: 600 LTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPL 659
+++V + + N++S+ QL + ++ + D+ ++ S + ++ +
Sbjct: 391 ISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLN-- 448
Query: 660 SKGLITKCL-VSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQI 718
+ I +CL + +EE+ LWH + GHLN ++ + KE +RGLP + +VC C +
Sbjct: 449 IRNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLL 507
Query: 719 GKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAE 778
G Q + + K + K LEL+H D+ GP++ +S G Y + +DDFSR TWV F+ E
Sbjct: 508 GNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKE 567
Query: 779 KSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQ 838
KS+ FE+F++ +++E G I +RSD G EF + +F +YC GI+ + + P + QQ
Sbjct: 568 KSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQ 627
Query: 839 NGVVEKK 845
NGV E+K
Sbjct: 628 NGVAERK 634
Score = 117 bits (294), Expect = 4e-26
Identities = 86/304 (28%), Positives = 151/304 (49%), Gaps = 24/304 (7%)
Query: 13 WKSIVKRWKHPVKSDKEGTSTTELKPEEEWTKEEDEEALGNSKALNAIFNGVDKNMFRLI 72
W+ + K + P + EG+ + K +++ D+ KAL I+ G+D++ F +
Sbjct: 35 WEIVEKGFIEP---ENEGSLSQTQKDGLRDSRKRDK------KALCLIYQGLDEDTFEKV 85
Query: 73 NTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANAS 132
T AK+AWE LR +++G +V+ RLQ L +FE L+MKE E V ++ +V + N
Sbjct: 86 VEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNL 145
Query: 133 FALGEPMSEEKLVRKILRSLSKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERS 192
GE + + +++ K+LRSL +F+ VT IEE +D+ + +++L+GSLQ +E
Sbjct: 146 KRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYE------- 198
Query: 193 EKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFNKVMRRFDRKYRP---NVTNKQ 249
EKK K V ++ ++++E ++ R + R +RP N +
Sbjct: 199 EKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRG 258
Query: 250 SDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECATFLKKQGKGMVATWSDDDS 309
+ + G DKS V+C+ C +GH SEC K+ K A + ++
Sbjct: 259 ENSSRGRGKGHPKSRYDKSS----VKCYNCGKFGHYASECKAPSNKKFKEK-ANYVEEKI 313
Query: 310 EEEE 313
+EE+
Sbjct: 314 QEED 317
>At3g60170 putative protein
Length = 1339
Score = 186 bits (471), Expect = 1e-46
Identities = 115/386 (29%), Positives = 190/386 (48%), Gaps = 21/386 (5%)
Query: 488 CHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYTSLRASSKED 547
C+ C GH + Y P+ W+ ++ + L+AY +++++
Sbjct: 252 CYKCHNLGHFQ------YECPE-WEKNANYAELE------EEEELLLMAYVEQNQANRDE 298
Query: 548 RYF-DSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKI---VNSDSPRLTDV 603
+F DSGCS HMTG K + ++ V G+ + + G G + VN + + +V
Sbjct: 299 VWFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEV 358
Query: 604 LLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGL 663
V L NL+S+ QL + L + C+V ++ +M S + +
Sbjct: 359 YYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQK 418
Query: 664 ITKCLVSKE---EETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGK 720
+ CL ++E +E LWH + GHLN + +K + K+ + GLP LK + ++C C GK
Sbjct: 419 NSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATK-EICAICLTGK 477
Query: 721 QTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKS 780
Q + K T +S L+L+H D+ GP+ S GKRY+ +DDF+R TWV F+ EKS
Sbjct: 478 QHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKS 537
Query: 781 DTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNG 840
+ F F+ +++E G + +R+D G EF +++F E+C GI + +A T QQNG
Sbjct: 538 EAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNG 597
Query: 841 VVEKKTGLCKNLQG*CFMQRKFPTIF 866
V E+K N +R+ P +F
Sbjct: 598 VAERKNRTIMNAVRSMLSERQVPKMF 623
Score = 92.4 bits (228), Expect = 2e-18
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
Query: 38 PEEEWTKEEDEEA-LGNSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVR 96
P E + EEA L + K N +F +D+ + I + +K WE ++ ++G+T+V+
Sbjct: 52 PVSEAQRSAVEEAKLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVK 111
Query: 97 VSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLSKRF 156
++LQ L +FE L MKE E + F + + N GE M + +V KILRSL+ +F
Sbjct: 112 RAQLQALRKEFELLAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKF 171
Query: 157 DMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLN 189
+ V +IEE+ D+ + +DEL GSL E LN
Sbjct: 172 NYVVCSIEESNDLSTLSIDELHGSLLVHEQRLN 204
>At2g10610 pseudogene
Length = 531
Score = 183 bits (464), Expect = 8e-46
Identities = 103/303 (33%), Positives = 167/303 (54%), Gaps = 10/303 (3%)
Query: 549 YFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSD---SPR-LTDVL 604
Y D+G S HMTG + Y + + + FGD ++ IKG G I D PR + DV
Sbjct: 173 YLDNGASNHMTGDRRYFDKMDHSITGKIRFGDDSRIDIKGKGTIAFIDLNGKPRVMLDVY 232
Query: 605 LVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLI 664
+ L +N+IS+ Q + + + D+ ++++ RS ++ Y + GL
Sbjct: 233 FIPELKSNIISLGQATESGCEIKLKDGYLTMHDQEGKLLVKAERSRNSLYK---VKMGLR 289
Query: 665 TK-CL-VSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQT 722
+ CL ++ + LWH ++GH++ ++K +I KE I+G P L IE +VCG C +GKQT
Sbjct: 290 KEACLYLTSTSMSSLWHARMGHVSLITLKSMIDKELIQGAPSLVIES-EVCGSCLLGKQT 348
Query: 723 QAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDT 782
+ + + T +K LEL+H DL GP+ ++ G RY+FV +DD+SR+ W + EK D
Sbjct: 349 RQSFPQATVFRATKKLELIHGDLCGPITPKTSVGNRYIFVLIDDYSRYMWTVLLKEKGDA 408
Query: 783 FEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVV 842
F F+ +++E G I +D G EF + +F+ +C + GI+ +AP T QQNG V
Sbjct: 409 FFKFKNFKALVEKESGEKIQTFITDRGGEFVSGEFNSFCERTGIRRHLTAPYTPQQNGEV 468
Query: 843 EKK 845
E++
Sbjct: 469 ERR 471
Score = 56.6 bits (135), Expect = 1e-07
Identities = 31/113 (27%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 106 QFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSL-SKRFDMKVTAIE 164
+F LKMK+ + +F + +++ S ALG + E +LV+K L+S+ KR+ V A+E
Sbjct: 3 EFHRLKMKDSHKIDDFAGMLSEISVKSAALGVIIEESRLVKKFLKSVPRKRYIHIVAALE 62
Query: 165 EAQDIGNIIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DE 217
+ D+ I D+++G L+ +E + + + + + +++D E E +E
Sbjct: 63 QVLDLNAITFDDIVGRLKVYEERVYDEDDPEEDQSKLLYSSMDSSKRESEGEE 115
>At3g25450 hypothetical protein
Length = 1343
Score = 179 bits (453), Expect = 1e-44
Identities = 105/313 (33%), Positives = 166/313 (52%), Gaps = 7/313 (2%)
Query: 538 TSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKI--VNS 595
T L + Y D+G S HMTG + + + V FGD + IKG G I ++
Sbjct: 282 TELESCINNAWYLDNGASNHMTGNRAWFCKLDEMITGKVRFGDDSCINIKGKGSIPFISK 341
Query: 596 DSPR--LTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNC 653
R L DV + L +N++S+ Q + ++ + + D +++ RS +
Sbjct: 342 GGERKILFDVYYIPDLKSNILSLGQATESGCDIRMREDYLTLHDREGNLLIKAQRSRNRL 401
Query: 654 YMWSPLSKGLITKCL-VSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKV 712
Y S + +KCL ++ E+ +WH +LGH++ +++K +I KE + G+ +E +
Sbjct: 402 YKVSLEVEN--SKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSSVPQEKET 459
Query: 713 CGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTW 772
CG C GKQ + + K T ++ LEL+H DL GP+ + KRYVFV +DD SR+ W
Sbjct: 460 CGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMW 519
Query: 773 VSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSA 832
+ EKS+ F F+E +++E G I R+D G EF + +F E+C KEGI +A
Sbjct: 520 SILLKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTA 579
Query: 833 PITTQQNGVVEKK 845
P T QQNGVVE++
Sbjct: 580 PYTPQQNGVVERR 592
Score = 90.1 bits (222), Expect = 9e-18
Identities = 63/236 (26%), Positives = 124/236 (51%), Gaps = 25/236 (10%)
Query: 47 DEEALGNSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQ 106
DEE ++AL +F + +++ + + WE ++ + G RV+ +RLQ L +
Sbjct: 56 DEEKNDMARAL--LFQSIPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQTLMAE 113
Query: 107 FENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSL-SKRFDMKVTAIEE 165
F+ LKMK+ ET+ ++ ++ ++ + ALGE + E K+V+K L+SL K++ V A+E+
Sbjct: 114 FDKLKMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVAALEQ 173
Query: 166 AQDIGNIIVDELIGSLQTFEMSL---NERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEA 222
D+ +++ G ++T+E + ++ E + K + V V DDL E+E +E +++
Sbjct: 174 VLDLKTTTFEDIAGRIKTYEDRVWDDDDSHEDQGKLMTEVEEEVVDDLEEEE-EEVINKE 232
Query: 223 ITLLGRKFNKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHE 278
I K + +V ++ +I+ K+KEED + +A+ + HE
Sbjct: 233 I----------------KAKSHVIDRLLKLIRLQEQ--KEKEEDDTHEAESLMMHE 270
>At2g05960 putative retroelement pol polyprotein
Length = 1200
Score = 177 bits (450), Expect = 3e-44
Identities = 102/309 (33%), Positives = 165/309 (53%), Gaps = 8/309 (2%)
Query: 542 ASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV----NSDS 597
A S + Y D+G S HMTG + + + V FGD ++ I+G G I+ N +
Sbjct: 251 ACSDKAWYLDNGASNHMTGNRDWFCKLDEMVTGKVKFGDDSRIDIRGKGSILFLTKNGEP 310
Query: 598 PRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWS 657
L +V + L +N+IS+ Q + +V + D + +++ RS + Y
Sbjct: 311 KTLANVYYIPDLKSNIISLGQATEAGCDVRLKDNYLTLHDRDGNLLVKATRSRNRLYRVE 370
Query: 658 PLSKGLITKCL-VSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGEC 716
K TKCL ++ + WH +LGH+N +++K ++TKE + G+P +E ++C C
Sbjct: 371 LKVKN--TKCLQLAALNDLTKWHARLGHINLETIKAMVTKEFVIGIPSAP-KEKEICASC 427
Query: 717 QIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFI 776
+GKQ + + K T S+ LEL+H DL GP+ + +RY+ V +DD SRF W +
Sbjct: 428 MLGKQARQVFPKATTYRASQILELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLL 487
Query: 777 AEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITT 836
EKS+ F F+ +++E G I +R+D G EF + +F +C +EGI +AP T
Sbjct: 488 KEKSEAFGKFKTFKATVEQETGEKIKTLRTDRGGEFLSQEFQTFCEEEGIIRHLTAPYTP 547
Query: 837 QQNGVVEKK 845
QQNGVVE++
Sbjct: 548 QQNGVVERR 556
Score = 74.3 bits (181), Expect = 5e-13
Identities = 40/133 (30%), Positives = 80/133 (60%), Gaps = 8/133 (6%)
Query: 78 AKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANASFALGE 137
+K W+ ++ + G RV+ ++L+ L +F+ LKMK+ ET+ E ++ +++ S +LGE
Sbjct: 43 SKAVWDKIQSRNLGAERVKEAKLKTLMAEFDKLKMKDNETIDECAGRLSEISTKSTSLGE 102
Query: 138 PMSEEKLVRKILRSL-SKRFDMKVTAIEEAQDIGNIIVDELIGSLQTFE-------MSLN 189
+ E K+V+K L+SL +K++ V A+E+ D+ N +++G ++T+E L
Sbjct: 103 DIEETKVVKKFLKSLPTKKYIHIVAALEQVLDLKNTTFKDIVGRIKTYEDKIWVLITCLK 162
Query: 190 ERSEKKNKSIAFV 202
+ +E++ KS+ V
Sbjct: 163 KEAEEEEKSVVGV 175
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 171 bits (432), Expect = 4e-42
Identities = 114/380 (30%), Positives = 179/380 (47%), Gaps = 38/380 (10%)
Query: 479 QKEINSRWRCHHCGKHGHIRPYCY-RLYRTPQHWKPTQKNVSMKGRKWQPKNNVTAL--- 534
Q+ S+ C+ C K GH C RL + + + Q N + + V L
Sbjct: 206 QQRDKSKVICYRCDKTGHYASECLDRLLKLIKAQEQQQNNEDDDEIESLMMHEVVYLNER 265
Query: 535 -VAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIV 593
V A S Y D+G S HMTG + + V FGD ++ IKG G IV
Sbjct: 266 SVKPKEFEACSDNSWYLDNGASNHMTGNLQWFSKLNEMITGKVRFGDDSRIDIKGKGSIV 325
Query: 594 ----NSDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRS 649
LTDV + L +N+IS+ Q + GC V +++++ +
Sbjct: 326 LITKGGIRKTLTDVYFIPDLKSNIISLGQATE---------AGCDVRMKDDQLTL---HD 373
Query: 650 VDNCYMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMK----KIITKEAIRGLPKL 705
+ C + L + +L+ L N K ++ ++ KE + G+ +
Sbjct: 374 REGCLL------------LRATRSRNRLYKVDLNVENVKCLQLEAATMVRKELVIGISNI 421
Query: 706 KIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVD 765
+E + CG C +GKQ + P+ K T S+ LEL+H DL GP+ + + KRY+ V +D
Sbjct: 422 P-KEKETCGSCLLGKQARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLID 480
Query: 766 DFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEG 825
D +R+ W + EKS+ FE FR+ ++++E G I R+D G EF + +F ++C KEG
Sbjct: 481 DHTRYMWSMLLKEKSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEG 540
Query: 826 IKHEFSAPITTQQNGVVEKK 845
I +AP T QQNGVVE++
Sbjct: 541 INRHLTAPYTPQQNGVVERR 560
Score = 83.6 bits (205), Expect = 8e-16
Identities = 61/262 (23%), Positives = 117/262 (44%), Gaps = 34/262 (12%)
Query: 53 NSKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTTRVRVSRLQLLTTQFENLKM 112
N A +F V ++ + +K WE ++ + G RV+ ++LQ L +F+ L M
Sbjct: 24 NDMARALLFQSVPESTILQVGKHKTSKAMWEAIKTRNLGAERVKEAKLQTLMAEFDRLNM 83
Query: 113 KEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSL-SKRFDMKVTAIEEAQDIGN 171
K+ ET+ EF ++ +++ S +LGE + E K+V+K L+SL K++ + A+E+ D+
Sbjct: 84 KDNETIDEFVGRISEISTKSESLGEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLNT 143
Query: 172 IIVDELIGSLQTFEMSLNERSEKKNKSIAFVSNTVDDDLSEKE*DENLSEAITLLGRKFN 231
++++G ++T+E D+D S +E + + +
Sbjct: 144 TGFEDIVGRMKTYE-----------------DRVCDEDDSPEEQGKLM----------YA 176
Query: 232 KVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK*VQCHECEGYGHIRSECAT 291
+D + +S G + +++ K I C+ C+ GH SEC
Sbjct: 177 NSESSYDTRGGRGRGRGRSSGRGRGGYGYQQRDKSKVI------CYRCDKTGHYASECLD 230
Query: 292 FLKKQGKGMVATWSDDDSEEEE 313
L K K +++D +E E
Sbjct: 231 RLLKLIKAQEQQQNNEDDDEIE 252
>At2g17490 putative retroelement pol polyprotein
Length = 822
Score = 170 bits (431), Expect = 5e-42
Identities = 100/321 (31%), Positives = 158/321 (49%), Gaps = 7/321 (2%)
Query: 528 KNNVTALVAYTSLRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIK 587
K N+ + S DSGC+ HMT + + + G+GA +
Sbjct: 10 KKNLVFIARQEIKEPSGGNTWLIDSGCTNHMTPNEKLFTKINRDFKVPIRVGNGAVMMSE 69
Query: 588 GSGKI---VNSDSPRLTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVM 644
G G I D + DVLLV L NL+S+ Q+ V+ C + D + +
Sbjct: 70 GKGDIEVMTRKDKRGIRDVLLVPKLGKNLLSVPQMIINGYQVTLKNNYCTIHDSARKKIG 129
Query: 645 IGIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPK 704
+ V+ + LS +V+K+E T+LWHK+LGH ++K + +KE + GLPK
Sbjct: 130 -EVEMVNKSFHLRWLSNE--ETAMVAKDEATELWHKRLGHTGHSNLKILQSKEMVTGLPK 186
Query: 705 LKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCV 764
+EEGK C C + K ++ P+ K + LEL+H D+ GPMQ S G RY+ +
Sbjct: 187 FNVEEGK-CESCILSKHSRDPFPKESETRAKHKLELIHSDVCGPMQNSSINGSRYILTFI 245
Query: 765 DDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKE 824
DD +R WV F+ KS+ F+ F++ ++ I K+R D G E+ + +FSE+
Sbjct: 246 DDATRMVWVYFLKAKSEVFQTFKKFKNLVENNANCRIKKLRIDRGTEYLSKEFSEFLEGN 305
Query: 825 GIKHEFSAPITTQQNGVVEKK 845
GI+ + +A + QQN V E++
Sbjct: 306 GIERQLTAAYSPQQNEVSERR 326
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 162 bits (410), Expect = 1e-39
Identities = 115/432 (26%), Positives = 202/432 (46%), Gaps = 29/432 (6%)
Query: 418 KEAKGRTGLGYTDNSGTEESKKITNTFIPTAKKTEFTKTNQVIQHNTPQIYRQMPYSYPL 477
+E + G Y + G E K NT + ++ ++ +H T + R+ P +
Sbjct: 206 REESTKEGAFYVRSKGRESGFKQDNTNNRVNQDKKWCGFHKSSKH-TEEECREKPKNDDH 264
Query: 478 SQKEINSRWRCHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAY 537
+ + S +C+ CGK GH C + H +++V+ + +
Sbjct: 265 GKNK-RSNIKCYKCGKIGHYANECRSKNKERAHVTLEEEDVNEDHMLFSASEEES----- 318
Query: 538 TSLRASSKEDRYF-DSGCSRHMTGVKMYLEHVKPHS--PSFVTFGDGAKGKIKGSGKIVN 594
T+LR ED + DSGC+ HMT + Y ++ P V GD KG ++
Sbjct: 319 TTLR----EDVWLVDSGCTNHMTKEERYFSNINKSIKVPIRVRNGDIVMTAGKGDITVMT 374
Query: 595 SDSPRLT-DVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEVVMIGIRSVDNC 653
R+ +V LV GL NL+S+ Q+ V F C + D N + +M I D
Sbjct: 375 RHGKRIIKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEIM-NIEMTDKS 433
Query: 654 YMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVC 713
+ S + + + + + + WHK+LGH++ K ++++ KE + GLP+ K+ + + C
Sbjct: 434 FKIKLSS--VEEEAMTANVQTEETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTK-ETC 490
Query: 714 GECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWV 773
C +GKQ++ + K + T + LE++H D+ GPMQ +S G RY + +DD++ WV
Sbjct: 491 KACNLGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWV 550
Query: 774 SFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAP 833
F+ +KS+TF F++ ++++ I +R +C EGI + + P
Sbjct: 551 YFLKQKSETFATFKKFKALVEKQSNCSIKTLR----------PMEVFCEDEGINRQVTLP 600
Query: 834 ITTQQNGVVEKK 845
+ QQNG E+K
Sbjct: 601 YSPQQNGAAERK 612
Score = 90.1 bits (222), Expect = 9e-18
Identities = 69/279 (24%), Positives = 130/279 (45%), Gaps = 22/279 (7%)
Query: 35 ELKPEEEWTKEEDEEALGN-SKALNAIFNGVDKNMFRLINTCTVAKDAWEILRVAHEGTT 93
E PE K EEA+ N + AL + V +F I + +K+AW++L+ ++G+
Sbjct: 49 EETPETARAKTLREEAVTNDTMALQILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSP 108
Query: 94 RVRVSRLQLLTTQFENLKMKEEETVFEFHMKVRDMANASFALGEPMSEEKLVRKILRSLS 153
+VR+ +LQ L ++ENLKM + + + F K+ + GE + +L++KIL SL
Sbjct: 109 QVRLVKLQSLRREYENLKMYDNDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLP 168
Query: 154 KRFDMKVTAIEEAQDIGNIIVDELIGSLQTFEMSLNERSEKKNKSIAFV-SNTVDDDLSE 212
+FD V+ +E+ +D+ + + EL+G L+ E + R E + +V S + +
Sbjct: 169 AKFDSIVSVLEQTRDLDALTMSELLGILKAQEARVTAREESTKEGAFYVRSKGRESGFKQ 228
Query: 213 KE*DENLSEAITLLGRKFNKVMRRFDRKYRPNVTNKQSDIIKNSGNALKDKEEDKSIKAK 272
+ +++ G F+K + + + R N K S
Sbjct: 229 DNTNNRVNQDKKWCG--FHKSSKHTEEECREKPKNDDHGKNKRSN--------------- 271
Query: 273 *VQCHECEGYGHIRSECATFLKKQGKGMVATWSDDDSEE 311
++C++C GH +EC + K + + V +D +E+
Sbjct: 272 -IKCYKCGKIGHYANECRS--KNKERAHVTLEEEDVNED 307
>At2g13930 putative retroelement pol polyprotein
Length = 1335
Score = 161 bits (408), Expect = 2e-39
Identities = 110/380 (28%), Positives = 181/380 (46%), Gaps = 27/380 (7%)
Query: 480 KEINSRWRCHHCGKHGHIRPYCYR-LYRTPQHWKPTQKNVSMKGRKWQPKNNVTALVAYT 538
K + + C CGK GH + CY+ + R + + S + + N L+A
Sbjct: 213 KSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATD 272
Query: 539 S---LRASSKEDRYFDSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSG--KIV 593
+ S + D+GCS HMT K + + K S +V G+ +KG G KI
Sbjct: 273 ETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIR 332
Query: 594 NSDSPR--LTDVLLVEGLTANLISISQL----CDLDLNVSFIKV--GCRVTDENEEVVMI 645
NSD + LTDV + +T NLIS+ L C +K+ GC + ++
Sbjct: 333 NSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKR--- 389
Query: 646 GIRSVDNCYMWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKL 705
D Y+ +++ + ++ET LWH +LGH++ K M+ ++ K +R +
Sbjct: 390 -----DTLYILDGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLR---RE 441
Query: 706 KIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMG-PMQKESFGGKRYVFVCV 764
I+E + C +C GKQ + + H+ T + L +H DL G P S G +Y V
Sbjct: 442 VIKELEFCEDCVYGKQHRVSFAPAQHV-TKEKLAYVHSDLWGSPHNPASLGNSQYFISFV 500
Query: 765 DDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKE 824
DD+SR W+ F+ +K + FE F E + ++ + + K+R+D+G E+ N F ++C +E
Sbjct: 501 DDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEE 560
Query: 825 GIKHEFSAPITTQQNGVVEK 844
GI + T QQNG+ E+
Sbjct: 561 GIVRHKTCAYTPQQNGIAER 580
>At2g12010 pseudogene
Length = 616
Score = 153 bits (386), Expect = 9e-37
Identities = 82/263 (31%), Positives = 147/263 (55%), Gaps = 10/263 (3%)
Query: 586 IKGSGKIVNSDSPR---LTDVLLVEGLTANLISISQLCDLDLNVSFIKVGCRVTDENEEV 642
I G G I S R + +V LV GL NL+S+ Q+ + +V F C D +
Sbjct: 151 IAGKGDITVCTSFRKKVIRNVFLVSGLEKNLLSVPQIISVGYSVLFENKCCTNLDRTGKK 210
Query: 643 VMIGIRSVDNCY--MWSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIR 700
+M I+ V+ + W+ + ++ + S+EE +LWH++LGH+ M+++ K+ +
Sbjct: 211 IM-EIQRVNKSFPIRWNSSQE---SELVTSEEEGMELWHRRLGHVGNSRMEQMHNKKMVD 266
Query: 701 GLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYV 760
G P + + ++CG C++GKQ + + + T + LE++H ++ GPMQ ES G Y
Sbjct: 267 GFPNFHVNK-EICGVCKLGKQVREAFPTESQTKTKEKLEIVHTNVCGPMQTESLNGSIYF 325
Query: 761 FVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEY 820
+ VDD++ W+ F+ +KS+ F VF++ ++ + G I ++RSD G EF +S F+E+
Sbjct: 326 LLLVDDYTHMAWIYFLKQKSEVFSVFKKSKALVETQSGKKIKRLRSDGGGEFTSSGFNEF 385
Query: 821 CIKEGIKHEFSAPITTQQNGVVE 843
C +EGI+ + + P T + V++
Sbjct: 386 CDQEGIERQVTVPYTHRSKMVLQ 408
>At1g26990 polyprotein, putative
Length = 1436
Score = 151 bits (381), Expect = 3e-36
Identities = 103/304 (33%), Positives = 152/304 (49%), Gaps = 17/304 (5%)
Query: 551 DSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRLTDVLLVEGLT 610
DSG S H+T + K +FV +G KI+G+G I +D+ L +VL +
Sbjct: 424 DSGASHHVTHERNLYHTYKALDRTFVRLPNGHTVKIEGTGFIQLTDALSLHNVLFIPEFK 483
Query: 611 ANLISISQLCD-LDLNVSFIKVGCRVTDENEEVVMIGIRSVDNCYMWSPLSKGLIT---- 665
NL+S+S L L VSF C + +E+++ V N Y+ + L K L+
Sbjct: 484 FNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILN-LDKSLVDVSSF 542
Query: 666 ---KCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKI-EEGKVCGECQIGKQ 721
S + E+++WHK+LGH S KI T + LPK KI ++ C C + KQ
Sbjct: 543 PGKSVCSSVKNESEMWHKRLGH---PSFAKIDTLSDVLMLPKQKINKDSSHCHVCHLSKQ 599
Query: 722 TQAPYKKLTHIATSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSD 781
P+K + HI K+ EL+H+D GP + RY VDDFSR TW+ + +KSD
Sbjct: 600 KHLPFKSVNHIR-EKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLLKQKSD 658
Query: 782 TFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGV 841
VF + ++ + + +RSD+ E KF+E KEGIK + P T +QN V
Sbjct: 659 VLTVFPSFLKMVETQYHTKVCSVRSDNAHEL---KFNELFAKEGIKADHPCPETPEQNFV 715
Query: 842 VEKK 845
VE+K
Sbjct: 716 VERK 719
>At2g07550 putative retroelement pol polyprotein
Length = 1356
Score = 146 bits (368), Expect = 1e-34
Identities = 111/379 (29%), Positives = 173/379 (45%), Gaps = 44/379 (11%)
Query: 488 CHHCGKHGHIRPYCYRLYRTPQHWKPTQKNVSM-KGRKWQPKNNVTALVAYTSLRASSK- 545
C CG+ GH R C P KP K + KG K N+ Y A S
Sbjct: 248 CWTCGEEGHFRSSC------PNQNKPQFKQSQVVKGESSGGKGNLAEAAGYYVSEALSST 301
Query: 546 ----EDRYF-DSGCSRHMTGVKMYLEHVKPHSPSFVTFGDGAKGKIKGSGKIVNSDSPRL 600
ED + D+GCS HMT + + + V G+ +++G G I +S
Sbjct: 302 EVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNS--- 358
Query: 601 TDVLLVEGLTANLISISQLCDLDLNV----SFIKVGCRVTDEN--------EEVVMIGIR 648
+GLT L ++ + D+D N+ +F K G + E+ +V++ G R
Sbjct: 359 ------DGLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDGILRIKAGNQVLLTG-R 411
Query: 649 SVDNCYM--WSPLSKGLITKCLVSKEEETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLK 706
D Y+ W P++ + +V + ++T LWH++L H++ K+M+ ++ K L K K
Sbjct: 412 RYDTLYLLNWKPVASESLA--VVKRADDTVLWHQRLCHMSQKNMEILVRKGF---LDKKK 466
Query: 707 IEEGKVCGECQIGKQTQAPYKKLTHIATSKSLELLHMDLMG-PMQKESFGGKRYVFVCVD 765
+ VC +C GK + + L H T + LE +H DL G P S G +Y +D
Sbjct: 467 VSSLDVCEDCIYGKAKRKSFS-LAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIID 525
Query: 766 DFSRFTWVSFIAEKSDTFEVFRELSQQLQREKGYGIVKIRSDHGKEFENSKFSEYCIKEG 825
DF+R WV F+ K + FE F E ++ + + +R+D+G EF N F +C G
Sbjct: 526 DFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIG 585
Query: 826 IKHEFSAPITTQQNGVVEK 844
I + T QQNGV E+
Sbjct: 586 IHRHRTCAYTPQQNGVAER 604
>At2g11230 putative retroelement pol polyprotein
Length = 962
Score = 141 bits (356), Expect = 3e-33
Identities = 67/172 (38%), Positives = 108/172 (61%), Gaps = 1/172 (0%)
Query: 674 ETKLWHKKLGHLNPKSMKKIITKEAIRGLPKLKIEEGKVCGECQIGKQTQAPYKKLTHIA 733
E+ WH +L H N ++K +I KE +RG+P +KIE+ +VC C GKQ++ + + T
Sbjct: 749 ESNRWHSRLRHTNLDTIKSMIQKELVRGIPHVKIEK-EVCDLCLFGKQSRQVFPQGTSYR 807
Query: 734 TSKSLELLHMDLMGPMQKESFGGKRYVFVCVDDFSRFTWVSFIAEKSDTFEVFRELSQQL 793
+K LEL+H DL GP+ + G +Y+FV +DD SR+ W + + EKSD+F F++ +
Sbjct: 808 AAKILELVHGDLCGPITPSTHAGNKYIFVIIDDKSRYMWTALLKEKSDSFNKFKQFRALV 867
Query: 794 QREKGYGIVKIRSDHGKEFENSKFSEYCIKEGIKHEFSAPITTQQNGVVEKK 845
++E I R++ G EF +F+++C + GIK +AP + QQNGVVE++
Sbjct: 868 EQETRIKIQTFRTNRGGEFILHEFTKFCEESGIKRHLTAPYSPQQNGVVERR 919
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.339 0.147 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,943,162
Number of Sequences: 26719
Number of extensions: 1258720
Number of successful extensions: 6957
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 6414
Number of HSP's gapped (non-prelim): 361
length of query: 1558
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1446
effective length of database: 8,326,068
effective search space: 12039494328
effective search space used: 12039494328
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0192.13