BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0191.15
         (398 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g03475 coproporphyrinogen III oxidase (LIN2)                       642  0.0
At4g17330 G2484-1 protein                                              31  1.4
At1g17290 alanine aminotransferase (ALAAT1)                            30  2.3
At5g25070 unknown protein                                              28  6.8
At1g71710 RIBOSOMAL PROTEIN, putative (At1g71710)                      28  8.9

>At1g03475 coproporphyrinogen III oxidase (LIN2)
          Length = 386

 Score =  642 bits (1655), Expect = 0.0
 Identities = 314/394 (79%), Positives = 340/394 (85%), Gaps = 13/394 (3%)

Query: 5   ATIVSPPSYAIPFFTSTSSTSSPTAKLLSKRRWNPLIQTKTMTSLGSKGAVRAGVSIEKE 64
           +T++S P++A   F+S     SP    L   R++  I+ K   +L      R  VSIEKE
Sbjct: 6   STLLSSPTFAP--FSSHRLHYSPNPSTL---RFSRPIRNKPNLAL------RCSVSIEKE 54

Query: 65  TPEAERPETFLRGGDTAEALSSSSSVRARFEKMIREAQDSVCDAIEAADGGAKFKEDVWS 124
            PE ERP TFLR  D     SSSSSVRARFE MIR AQDSVCDAIEA +GG KFKEDVWS
Sbjct: 55  VPETERPFTFLRDSDDVTPSSSSSSVRARFETMIRAAQDSVCDAIEAIEGGPKFKEDVWS 114

Query: 125 RPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGAAASPDEKPGPVPFFAAG 184
           RPGGGGGISRVLQDG V+EKAGVNVSVVYGVMPP+AYRAAKG+A+  D+KPGPVPFFAAG
Sbjct: 115 RPGGGGGISRVLQDGNVFEKAGVNVSVVYGVMPPEAYRAAKGSAS--DQKPGPVPFFAAG 172

Query: 185 ISSVLHPKNPFAPTMHFNYRYFETDAPKDAPGAPKQWWFGGGTDLTPAYIFEEDVKHFHS 244
           +SSVLHPKNPFAPT+HFNYRYFETDAPKD PGAP+QWWFGGGTD TPAYIFEEDVKHFHS
Sbjct: 173 VSSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDFTPAYIFEEDVKHFHS 232

Query: 245 IQKQACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECA 304
           IQKQACDKFDP+FYPRFKKWCDDYFYIKHR ERRGLGGIFFDDLNDYDQEMLLSFATECA
Sbjct: 233 IQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGGIFFDDLNDYDQEMLLSFATECA 292

Query: 305 NSVVPSYIPIIEKRKDTPFTDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV 364
           NSVVP+YIPI+EKRKD  FT+  KAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV
Sbjct: 293 NSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILV 352

Query: 365 SLPLTSRWEYDHKPEEGSEEWKLLDACINPKEWI 398
           SLPL++RWEYDHKPEEG+EEWKLLDACINPKEWI
Sbjct: 353 SLPLSARWEYDHKPEEGTEEWKLLDACINPKEWI 386


>At4g17330 G2484-1 protein
          Length = 2037

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 10/87 (11%)

Query: 3   SCATIVSPPSYAIPFFTSTSSTSSPTAKLLSKRRWNPLIQTKTMTSLGSKGAVRAGVSIE 62
           S AT+VSP     P  +S   T++ ++K  S+R+       +T  S+G K   R G S++
Sbjct: 827 SQATLVSPIVVGSPSTSSLDKTAAKSSKAKSERK-----PRRTSKSVG-KETSRKGTSVK 880

Query: 63  KETPEAERPETFLRGGDTAEALSSSSS 89
             TP     E F  GG T     S +S
Sbjct: 881 GATP----IEQFQSGGKTNAVNQSLAS 903


>At1g17290 alanine aminotransferase (ALAAT1)
          Length = 488

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 98  IREAQDSVCDAIEAADGGAKFKEDVWSRPGGGGGISRVLQDGAVWEKAGV 147
           I+  +D++ D IEA DG      D++   G   G+  ++Q     EK G+
Sbjct: 124 IKGLRDAIADGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGI 173


>At5g25070 unknown protein
          Length = 736

 Score = 28.5 bits (62), Expect = 6.8
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 41  IQTKTMTSLGSKGAVRAGVSIEKETPEAERPETFLRGGDTAEALSSSSSVRARFEKMIRE 100
           I+ K   S   + A      +EK+  EA   E F      +E+L++    R     ++R+
Sbjct: 218 IRKKRQASENLRLASTTHEELEKQLEEAIETEDFDAAERISESLAAKERDRLALLALLRQ 277

Query: 101 AQDSVCDAIEA 111
           A +S CDAIE+
Sbjct: 278 A-ESDCDAIES 287


>At1g71710 RIBOSOMAL PROTEIN, putative (At1g71710)
          Length = 664

 Score = 28.1 bits (61), Expect = 8.9
 Identities = 22/89 (24%), Positives = 35/89 (38%), Gaps = 8/89 (8%)

Query: 33  SKRRWNPLIQTKTMTSLGSKGAVRAGVSIEKETPEAERPETFLRGGDTAEALSSSSSVRA 92
           S+R W  L+  K +   G      A    E E  +A          D++      S  R 
Sbjct: 18  SQRLWAKLVMRKWLNISGRDPEYGADTDNESENEDAREDND-----DSSSDEEGGSGSRG 72

Query: 93  RFEKMIREAQDSVCDA---IEAADGGAKF 118
           R  K+   A+D++  A   ++AA   A+F
Sbjct: 73  RESKVYENAEDAIAAASAVVDAAAAAAEF 101


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,268,815
Number of Sequences: 26719
Number of extensions: 478907
Number of successful extensions: 1137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 6
length of query: 398
length of database: 11,318,596
effective HSP length: 101
effective length of query: 297
effective length of database: 8,619,977
effective search space: 2560133169
effective search space used: 2560133169
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)