BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0190.5
(331 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g26670 unknown protein 32 0.37
At5g20690 receptor protein kinase - like 30 1.4
At4g38610 putative protein 30 1.4
At3g08850 unknown protein 30 2.4
At5g60300 receptor like protein kinase 28 5.3
At3g09620 putative RNA helicase 28 5.3
At4g36080 ATM-like protein 28 6.9
At3g61380 putative protein 28 6.9
>At3g26670 unknown protein
Length = 441
Score = 32.3 bits (72), Expect = 0.37
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 30/164 (18%)
Query: 138 EIVEIDSLSYQLFEFDLRCIFSPQQLVSERLVRGTEAGVPKVSIDGVVRWSVPFLTVERT 197
E D+L +F + C+F L++ RG E S+D +V SVP T E
Sbjct: 280 EFQVFDALRTTMFILGMMCVFIGISLLAPDDTRGNETKDNSSSLDSIVSSSVP--TEEDR 337
Query: 198 AVQGWIASADGRTMGDVVEGLTFEGEIVGIKCWSQVPHQRSQDVVSKISLVFPLCLALWV 257
+ + VV+G+ + ++ D+++K CLA
Sbjct: 338 LIPQSSEDGHSKDTRVVVQGM----------------YMKAADLIAKTKTA---CLAALG 378
Query: 258 LA---------VTLPNRQKKIRRNRKNENERVRVCRMRSCSWER 292
+ +P KI R N ER ++ MR W +
Sbjct: 379 FGEDSINASAILVMPMVSSKITGFRGNGLERAKILSMRGSGWSK 422
>At5g20690 receptor protein kinase - like
Length = 659
Score = 30.4 bits (67), Expect = 1.4
Identities = 18/76 (23%), Positives = 36/76 (46%), Gaps = 7/76 (9%)
Query: 231 SQVPHQRSQDVVSKISLVFPLCLALWVLAVTLPNRQKK-------IRRNRKNENERVRVC 283
S VP ++ ++ I + L L +++ + R KK + NR+N+ VR+
Sbjct: 256 SSVPETSNKAAINAIMVSISLLLLFFIIVGVIKRRNKKKNPDFRMLANNRENDVVEVRIS 315
Query: 284 RMRSCSWERSKSSNKE 299
S + +RS S+++
Sbjct: 316 ESSSTTAKRSTDSSRK 331
>At4g38610 putative protein
Length = 1083
Score = 30.4 bits (67), Expect = 1.4
Identities = 22/60 (36%), Positives = 33/60 (54%), Gaps = 4/60 (6%)
Query: 16 LPCLPQQVVSEPMVGVAMVTAPC-VESLPSGFGLRCGVQDLLGVSPRPCPMGPRRDSPQQ 74
LP LP+ V+S P A+V C +S PS G + +D+L +SPR +G + + QQ
Sbjct: 525 LPPLPEGVISLPTSTNALVKGSCQKKSSPSTSGKQ---EDILKISPREKLLGDQPELLQQ 581
>At3g08850 unknown protein
Length = 1344
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 20 PQQVVSEPMVGVAMVTAPCVESLPSGFGLRCG--VQDLLGVSPRPCPMGPRRDSPQQVVS 77
P +++P++G A + + L + +G CG + LLG + + +R+ ++
Sbjct: 942 PDSGLADPLLG-ASGSERSLLPLSTIYGWSCGHFSKPLLGGADASQEIAAKREEKEKFAL 1000
Query: 78 ERLVRGTEAGVPKVSIDDVVRWSVPFLTVERTAV 111
E + + + + K++ + + W F T +TA+
Sbjct: 1001 EHIAKCQHSSISKLNNNPIANWDTRFETGTKTAL 1034
>At5g60300 receptor like protein kinase
Length = 718
Score = 28.5 bits (62), Expect = 5.3
Identities = 14/30 (46%), Positives = 21/30 (69%), Gaps = 1/30 (3%)
Query: 232 QVPHQRS-QDVVSKISLVFPLCLALWVLAV 260
+VPH R+ VS + ++ P+CLA+ VLAV
Sbjct: 275 EVPHPRAPHKKVSTLIILLPVCLAILVLAV 304
>At3g09620 putative RNA helicase
Length = 989
Score = 28.5 bits (62), Expect = 5.3
Identities = 16/52 (30%), Positives = 25/52 (47%), Gaps = 2/52 (3%)
Query: 265 RQKKIRRNRKNENERVRVCRMRSCSWERSKSSNKEGPEEVTTKGENRGKART 316
R +++ +K E V R R W+ K N+E ++ +KG GKA T
Sbjct: 146 RDEQVEDEQKQLAEEVEKRRRRVQEWQELKRQNEEA--QIESKGPETGKAWT 195
>At4g36080 ATM-like protein
Length = 3738
Score = 28.1 bits (61), Expect = 6.9
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 11/56 (19%)
Query: 232 QVPHQRSQD-----VVSKISLVFPLCLALWVLAVTLPNRQKKIRRNRKNENERVRV 282
QVPH R++ V+ KI+ VFP L W+ L RR+ N++E RV
Sbjct: 3025 QVPHWRTEAPHCKLVLMKIAAVFPQALYYWLRTYLLE------RRDAVNKSELSRV 3074
>At3g61380 putative protein
Length = 718
Score = 28.1 bits (61), Expect = 6.9
Identities = 20/71 (28%), Positives = 32/71 (44%), Gaps = 4/71 (5%)
Query: 255 LWVLAVTLPNRQKKIRRNRKNENERVRVCRMR--SCSWERSKSSNKEGPEEVTTKGENRG 312
+WV + QK++ + K ++RV M+ +CS E S S E V+ G+
Sbjct: 20 VWVFISLFGSNQKRLLMDNKRGSKRVSGNEMKQITCSCESSHESVDEEDIHVSVAGDEH- 78
Query: 313 KARTTVCPRLL 323
T VC L+
Sbjct: 79 -VETEVCKSLV 88
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,468,461
Number of Sequences: 26719
Number of extensions: 307719
Number of successful extensions: 702
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 11
length of query: 331
length of database: 11,318,596
effective HSP length: 100
effective length of query: 231
effective length of database: 8,646,696
effective search space: 1997386776
effective search space used: 1997386776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0190.5