BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0189.9
(214 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15410 putative retroelement pol polyprotein 152 1e-37
At1g20390 hypothetical protein 144 5e-35
At2g15100 putative retroelement pol polyprotein 138 2e-33
At2g14400 putative retroelement pol polyprotein 131 3e-31
At1g36830 hypothetical protein 104 3e-23
At3g31970 hypothetical protein 82 3e-16
At2g04670 putative retroelement pol polyprotein 81 5e-16
At2g14650 putative retroelement pol polyprotein 80 6e-16
At2g13060 pseudogene 79 1e-15
At2g13230 pseudogene 79 2e-15
At2g06320 putative retroelement pol polyprotein 78 3e-15
At1g35370 hypothetical protein 78 4e-15
At4g16910 retrotransposon like protein 75 2e-14
At2g07660 putative retroelement pol polyprotein 75 3e-14
At2g10780 pseudogene 74 4e-14
At2g14640 putative retroelement pol polyprotein 74 6e-14
At1g37060 Athila retroelment ORF 1, putative 74 6e-14
At3g11970 hypothetical protein 72 3e-13
At1g36590 hypothetical protein 72 3e-13
At3g31530 hypothetical protein 70 6e-13
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 152 bits (384), Expect = 1e-37
Identities = 90/216 (41%), Positives = 117/216 (53%), Gaps = 6/216 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
V+DNG QF S Q + FC + I+ S+ +PQ NGQA++ NK I GLK+ L E KGAW
Sbjct: 1566 VTDNGTQFTSLQFEGFCAKWKIRLSKSTPRYPQCNGQAEATNKTILDGLKKRLDEKKGAW 1625
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGE--NSSNMA 118
DEL V WSY TT +T +TPF +TYG + + P E + R + N +
Sbjct: 1626 ADELDGVLWSYRTTPRRSTDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLL 1685
Query: 119 VELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVT----GNKLS 174
LD L E ++A L+ +Q AA Y+ KVK R EGDLVL+K T KL
Sbjct: 1686 DNLDTLEEQRDQALLRIQNYQQAAAKFYNKKVKNRLFAEGDLVLRKVFENTVEQDAGKLG 1745
Query: 175 PIWEGPYRILKALGRGAYHLESLDGKRVPRS*TQQN 210
WEGPY I K + G Y L ++DG +PRS N
Sbjct: 1746 AHWEGPYLISKVVKPGVYELLTMDGTPIPRSWNSAN 1781
>At1g20390 hypothetical protein
Length = 1791
Score = 144 bits (362), Expect = 5e-35
Identities = 84/211 (39%), Positives = 109/211 (50%), Gaps = 6/211 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DNG QF S + FC I+ S+ +PQ NGQA++ NK I GLK+ L E KGAW
Sbjct: 1570 ITDNGSQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAW 1629
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGE--NSSNMA 118
DEL V WSY TT S T +TPF YG + M P E+ SS R + + N M
Sbjct: 1630 ADELDGVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELNDRMML 1689
Query: 119 VELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK----RTGVTGNKLS 174
LD L E N A + + AA Y+ KV R GDLVL+K + KL
Sbjct: 1690 DRLDDLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLG 1749
Query: 175 PIWEGPYRILKALGRGAYHLESLDGKRVPRS 205
WEG Y++ K + G Y L ++ G VPR+
Sbjct: 1750 ANWEGSYQVSKIVRPGDYELLTMSGTAVPRT 1780
>At2g15100 putative retroelement pol polyprotein
Length = 1329
Score = 138 bits (347), Expect = 2e-33
Identities = 78/211 (36%), Positives = 112/211 (52%), Gaps = 6/211 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
V+DNG QF S Q + FCEE I+ S+ +PQ NGQA++ NK I LK+ L+ KGAW
Sbjct: 1108 VTDNGSQFISEQFEVFCEEWQIRLSHSTPRYPQGNGQAEAMNKTIISNLKKKLNAYKGAW 1167
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWR--TTPKFEGENSSNMA 118
EL V W+ TT T +TPF + YG + ++P EI S R P+ E EN+ +
Sbjct: 1168 FGELQNVLWAVRTTPRRATDETPFSLIYGMEAVIPAEIKVPSARRIRNPQNETENNEMII 1227
Query: 119 VELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK----RTGVTGNKLS 174
+D + E N A + A Y++ V+ R + G LVL++ + KL
Sbjct: 1228 DVIDTIDERRNRALARMQNYHNAGARYYNSNVRNRSFEVGTLVLRRVQQNKAEKGAGKLG 1287
Query: 175 PIWEGPYRILKALGRGAYHLESLDGKRVPRS 205
WEGPY+I + G Y L +++GK V R+
Sbjct: 1288 ISWEGPYKITHVVRNGVYRLINMEGKTVRRA 1318
>At2g14400 putative retroelement pol polyprotein
Length = 1466
Score = 131 bits (329), Expect = 3e-31
Identities = 72/190 (37%), Positives = 108/190 (55%), Gaps = 6/190 (3%)
Query: 21 GIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAWLDELPIVFWSYNTTQHSTTG 80
GI+ +S++ +PQ NGQA++ANK I LK+ L+ KG W DEL V W+Y TT +TG
Sbjct: 1085 GIKVSYSTLRYPQGNGQAEAANKTILSNLKKRLNHLKGGWYDELQPVLWAYRTTPRRSTG 1144
Query: 81 KTPFRMTYGADVMLPVEIDNSSWRTT--PKFEGENSSNMAVELDLLSETHNEARLKEAAM 138
+TPF + YG ++P E++ R T P E ENS+ + LD ++E ++A ++
Sbjct: 1145 ETPFSLVYGMKAVVPAELNVPGLRRTEAPLNEKENSAMLDDSLDTINERRDQALIQIQNY 1204
Query: 139 KQRAAAKYDTKVKPREMQEGDLVLKK----RTGVTGNKLSPIWEGPYRILKALGRGAYHL 194
+ AA Y++KVK R GD VLK+ + KL WEGPY + + + G Y L
Sbjct: 1205 QHAAARYYNSKVKSRPFFVGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTEVVRNGVYRL 1264
Query: 195 ESLDGKRVPR 204
+ L+ + V R
Sbjct: 1265 KDLEDRPVQR 1274
>At1g36830 hypothetical protein
Length = 243
Score = 104 bits (260), Expect = 3e-23
Identities = 53/166 (31%), Positives = 88/166 (52%), Gaps = 2/166 (1%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
++DNG S + K FC++ I+ S+ +PQ NGQA++ANK I +K+ L K W
Sbjct: 62 ITDNGTNLTSRKIKAFCDKWKIRLTTSTPHYPQGNGQAEAANKAILSNIKKILDSKKSMW 121
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGE--NSSNMA 118
D L V W+Y TT +T +TPF + YG + ++P+ S R T N+ +
Sbjct: 122 SDVLHGVLWAYRTTPRKSTQETPFSLAYGLEAVIPIVTIIPSVRRTASHANSDMNTQMLR 181
Query: 119 VELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKK 164
+D + E ++A ++ +Q Y++ +K R + G+LVL+K
Sbjct: 182 DNMDFIDERRDQAMIRVQNYQQAVTRYYNSNIKIRRFEVGELVLRK 227
>At3g31970 hypothetical protein
Length = 1329
Score = 81.6 bits (200), Expect = 3e-16
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 26/213 (12%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD +F S + F EMG + + S+ HPQT+GQ++ + ++ L+ + + G W
Sbjct: 1039 VSDRDSKFTSAFWRAFQGEMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDRGGHW 1098
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
D L +V ++YN + ++ PF YG P+ W GE S A
Sbjct: 1099 ADHLSLVEFAYNNSYQASIRMAPFEALYGRPCRTPL-----CWTQV----GERSIYGA-- 1147
Query: 121 LDLLSETHNEAR-----LKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG----- 170
D + ET R +KEA +QR+ A D + + E + GD V K + G
Sbjct: 1148 -DYVLETTERIRVLKLNMKEAQDRQRSYA--DKRRRELEFEVGDRVYLKMAMLRGPNRSI 1204
Query: 171 --NKLSPIWEGPYRILKALGRGAYHLESLDGKR 201
KL+P + GP+RI++ +G AY LE D R
Sbjct: 1205 SETKLTPRYMGPFRIVERVGPVAYRLELPDVMR 1237
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 80.9 bits (198), Expect = 5e-16
Identities = 61/213 (28%), Positives = 97/213 (44%), Gaps = 26/213 (12%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD +F + F +MG + + S+ HPQT+GQ++ + ++ L+ + + G W
Sbjct: 1121 VSDRDSKFTFAFWRAFQAKMGTKVQMSTAYHPQTDGQSERTIQTLEDMLRMCVLDWGGHW 1180
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
D L +V ++YN + ++ G PF YG P+ W +
Sbjct: 1181 ADHLSLVEFAYNNSYQASIGMAPFEALYGRPCWTPLR-----WT-------QVEERSIYG 1228
Query: 121 LDLLSETHNEAR-----LKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG----- 170
D + ET R +KEA +QR+ A D + + E + GD V K + G
Sbjct: 1229 ADYVQETTERIRVLKLNMKEAQARQRSYA--DKRRRELEFEVGDRVYLKMAMLRGPNRSI 1286
Query: 171 --NKLSPIWEGPYRILKALGRGAYHLESLDGKR 201
KLSP + GP+RI++ +G AY LE D R
Sbjct: 1287 LETKLSPRYMGPFRIVERVGPVAYRLELPDVMR 1319
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 80.5 bits (197), Expect = 6e-16
Identities = 65/213 (30%), Positives = 99/213 (45%), Gaps = 26/213 (12%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD +F S + F EMG + + S+ HPQT GQ++ + ++ L+ + + G W
Sbjct: 1041 VSDRDSKFTSAFWRAFQAEMGTKVQMSTAYHPQTYGQSERTIQTLEDMLRMCVLDWGGHW 1100
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
D L +V ++YN + ++ G PF Y P+ + GE S A
Sbjct: 1101 ADHLSLVEFAYNNSYPASIGMAPFEALYERPCRTPLCLTQ---------VGERSIYGA-- 1149
Query: 121 LDLLSETHNEAR-----LKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG----- 170
D + ET R +KEA +QR+ A D + + E + GD V K + G
Sbjct: 1150 -DYVQETTERIRVLKLNMKEAQDRQRSYA--DKRRRELEFEVGDRVYLKMAMLRGPNRSI 1206
Query: 171 --NKLSPIWEGPYRILKALGRGAYHLESLDGKR 201
KLSP + GP+RI++ +G AY LE D R
Sbjct: 1207 SETKLSPRYMGPFRIVERVGPVAYRLELPDVMR 1239
>At2g13060 pseudogene
Length = 930
Score = 79.3 bits (194), Expect = 1e-15
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
+SD F + ++ + G+Q R ++ HPQT+GQ + +N+ I++ L++ + +AK W
Sbjct: 330 ISDGDKHFINKILEKLLLQYGVQHRVATPYHPQTSGQVEVSNRQIKEILEKTVGKAKKEW 389
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+L W+Y T + G TPF + YG LPVE+++ + + S E
Sbjct: 390 SYKLYDALWAYKTAFKTPLGTTPFHLLYGKACHLPVELEHKAAWAVKMMNFDIKSAGESE 449
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLK 163
LD E A K+R A +D K+ R + D +L+
Sbjct: 450 LD---EIRIHAYDNSKLYKERTKAYHDKKILTRTFEPNDQILR 489
>At2g13230 pseudogene
Length = 353
Score = 78.6 bits (192), Expect = 2e-15
Identities = 38/79 (48%), Positives = 52/79 (65%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
V+DNG QF S + + FC++ GI+ S+ + Q NGQAD+ANK I GLK+ L+ KG+W
Sbjct: 275 VTDNGSQFISTRFQGFCDKWGIRLSKSTPRYLQGNGQADAANKTILDGLKKRLTAKKGSW 334
Query: 61 LDELPIVFWSYNTTQHSTT 79
+DEL V WS+ TT T
Sbjct: 335 VDELEGVLWSHRTTPRRAT 353
>At2g06320 putative retroelement pol polyprotein
Length = 466
Score = 78.2 bits (191), Expect = 3e-15
Identities = 53/204 (25%), Positives = 92/204 (44%), Gaps = 5/204 (2%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
+SD G F + + ++ G++ + ++ HPQT+GQ + +N+ I+ L++ + + W
Sbjct: 231 ISDGGKHFINKVFENLLKKHGVKHKVATPYHPQTSGQVEISNREIKTILEKTVGITRKDW 290
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEID-NSSWRT-TPKFEGENS-SNM 117
+L W+Y T + G TPF + L VE++ + W F+ + +
Sbjct: 291 STKLDDALWAYKTAFKTPIGTTPFNLLCVKSCHLHVELEYKAMWAVKLLNFDIKTAEEKR 350
Query: 118 AVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVL--KKRTGVTGNKLSP 175
++L L E EA K+R +D K+ ++ Q GD VL R + KL
Sbjct: 351 LIQLSELDEIRLEAYESSKIYKERTKLFHDKKIITKDFQVGDQVLLFNSRLKIFPGKLKS 410
Query: 176 IWEGPYRILKALGRGAYHLESLDG 199
W GP+ I + GA L G
Sbjct: 411 RWSGPFCITEVRPYGAVTLAGKSG 434
>At1g35370 hypothetical protein
Length = 1447
Score = 77.8 bits (190), Expect = 4e-15
Identities = 56/195 (28%), Positives = 93/195 (46%), Gaps = 15/195 (7%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD + F S+ KEF + G++ R SS HPQ++GQ + N+ ++ L+ W
Sbjct: 1188 VSDRDVLFTSDFWKEFFKLQGVELRMSSAYHPQSDGQTEVVNRCLENYLRCMCHARPHLW 1247
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYG--ADVMLPVEIDNSSWRTTPKFEGENSSNMA 118
LP+ + YNT HS++ TPF + YG + LP S + E + +
Sbjct: 1248 NKWLPLAEYWYNTNYHSSSQMTPFELVYGQAPPIHLPYLPGKSKVAVVARSLQERENMLL 1307
Query: 119 -VELDLLSETHNEARLKEAAMKQRAAAKYD----TKVKPREMQEGDLVLKKRTGVTGNKL 173
++ L+ H R+K+ A + R +D VK + ++ +VL+ KL
Sbjct: 1308 FLKFHLMRAQH---RMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLR-----VNQKL 1359
Query: 174 SPIWEGPYRILKALG 188
SP + GPY+I++ G
Sbjct: 1360 SPKYFGPYKIIEKCG 1374
>At4g16910 retrotransposon like protein
Length = 687
Score = 75.5 bits (184), Expect = 2e-14
Identities = 57/202 (28%), Positives = 95/202 (46%), Gaps = 16/202 (7%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD +F S K F + +G + S+ HPQT+GQ++ + ++ L+ + + G W
Sbjct: 382 VSDRDTRFTSKFWKPFQKVLGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNW 441
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
L +V ++YN + ++ G +P+ YG P+ W TP E V+
Sbjct: 442 EKYLRLVEFAYNNSFQASIGMSPYEALYGRAGRTPL-----CW--TPVGERRLFGPAVVD 494
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG-------NKL 173
+ +LKEA +Q++ A + + K E Q GDLV K G KL
Sbjct: 495 ETTKKMKFLKIKLKEAQDRQKSYA--NKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKL 552
Query: 174 SPIWEGPYRILKALGRGAYHLE 195
P + GPY++++ +G AY L+
Sbjct: 553 RPRYVGPYKVIERVGAVAYKLD 574
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 75.1 bits (183), Expect = 3e-14
Identities = 56/202 (27%), Positives = 95/202 (46%), Gaps = 16/202 (7%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD +F S F + +G + S+ HPQT+GQ++ + ++ L+ + + G W
Sbjct: 690 VSDRDTRFTSKFWNAFQKALGTRVNLSTAYHPQTDGQSERTIQTLEDMLRACVLDWGGNW 749
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
L ++ ++YN + ++ G +P+ YG P+ W TP E V+
Sbjct: 750 EKYLRLIEFAYNNSFQASIGMSPYEALYGRACRTPL-----CW--TPVGERRLFGPTIVD 802
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG-------NKL 173
+ +LKEA +Q++ A + + K E Q GDLV K G KL
Sbjct: 803 ETTERMKFLKIKLKEAQDRQKSYA--NKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKL 860
Query: 174 SPIWEGPYRILKALGRGAYHLE 195
SP + GPY++++ +G AY L+
Sbjct: 861 SPRYVGPYKVIERVGAVAYKLD 882
>At2g10780 pseudogene
Length = 1611
Score = 74.3 bits (181), Expect = 4e-14
Identities = 57/202 (28%), Positives = 95/202 (46%), Gaps = 16/202 (7%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD +F S K F + +G + S+ HPQT+ Q++ + ++ L+ + + G W
Sbjct: 1298 VSDRDTRFTSKFWKAFQKALGTRVNLSTAYHPQTDEQSERTIQTLEDMLRACVLDWGGNW 1357
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
L +V ++YN + ++ G +P+ YG P+ W TP E V+
Sbjct: 1358 EKYLRLVEFAYNNSFQASIGMSPYEALYGRACRTPL-----CW--TPVGERRLFGPTIVD 1410
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVLKKRTGVTG-------NKL 173
+ +LKEA +Q++ A + + K E Q GDLV K G KL
Sbjct: 1411 ETTERMKFLKIKLKEAQDRQKSYA--NKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKL 1468
Query: 174 SPIWEGPYRILKALGRGAYHLE 195
SP + GPY++++ +G AY L+
Sbjct: 1469 SPRYVGPYKVIERVGAVAYKLD 1490
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 73.9 bits (180), Expect = 6e-14
Identities = 63/210 (30%), Positives = 95/210 (45%), Gaps = 17/210 (8%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD F S +EF + + S+ HPQT+GQ + N+ I+Q L+ + W
Sbjct: 653 VSDCDPIFMSLFWQEFWKLSRTKLWMSTAYHPQTDGQTEVVNRCIEQFLRCFVHYHPKQW 712
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWRTTPKFEGENSSNMAVE 120
+P + YNTT H++TG TPF+ YG P I ++ GE + MA
Sbjct: 713 SSFIPWAEYWYNTTFHASTGMTPFQALYGRP---PSPI--PAYELGSVVCGELNEQMAAR 767
Query: 121 LDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVL--------KKRTGVTGNK 172
+LL+E MKQ+A D++++ Q GD VL K + K
Sbjct: 768 DELLAELKQHLVTANNCMKQQA----DSRLRDVSFQVGDWVLLRIQPYRQKTLFRRSSQK 823
Query: 173 LSPIWEGPYRILKALGRGAYHLESLDGKRV 202
LS + GP+++ G AY L +G R+
Sbjct: 824 LSHRFYGPFQVASKHGEVAYRLTLPEGTRI 853
>At1g37060 Athila retroelment ORF 1, putative
Length = 1734
Score = 73.9 bits (180), Expect = 6e-14
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
+SD G F + + ++ G++ + T+GQ + +N+ I+ L++ + + W
Sbjct: 1507 ISDGGKHFINKGFENLLKKHGVKHK--------TSGQVEISNREIKAILEKTVGSTRKDW 1558
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEID-NSSWRT-TPKFEGENS-SNM 117
+L W+Y T + G TPF + YG LPVE++ + W F+ + +
Sbjct: 1559 SAKLNDTLWAYRTAFKTPIGTTPFNLLYGKSCHLPVELEYKAMWAVKLLNFDIKTAEEKR 1618
Query: 118 AVELDLLSETHNEARLKEAAMKQRAAAKYDTKVKPREMQEGDLVL--KKRTGVTGNKLSP 175
++L+ L++ EA K+R + +D K+ R+ + GD VL R + KL
Sbjct: 1619 LIQLNDLNKIRLEAYESSKIYKERTKSFHDKKIVSRDFKVGDQVLLFNSRLRLFPGKLKS 1678
Query: 176 IWEGPYRILKALGRGAYHLESLDG 199
W GP+ + GA L +G
Sbjct: 1679 RWSGPFSVTAVRPYGAITLAGKNG 1702
>At3g11970 hypothetical protein
Length = 1499
Score = 71.6 bits (174), Expect = 3e-13
Identities = 54/201 (26%), Positives = 92/201 (44%), Gaps = 15/201 (7%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD + F S +EF G+ + +S HPQ++GQ + N+ ++ L+ + W
Sbjct: 1217 VSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLW 1276
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYG--ADVMLPVEIDNSSWRTTPKFEGENSSNMA 118
L + + YNT HS++ TPF + YG V LP S + E +
Sbjct: 1277 SKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLL 1336
Query: 119 -VELDLLSETHNEARLKEAAMKQRAAAKYD----TKVKPREMQEGDLVLKKRTGVTGNKL 173
++ L+ H R+K+ A + R +++ VK + ++ +V++ KL
Sbjct: 1337 FLKFHLMRAQH---RMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMR-----ANQKL 1388
Query: 174 SPIWEGPYRILKALGRGAYHL 194
SP + GPY+I+ G AY L
Sbjct: 1389 SPKYFGPYKIIDRCGEVAYKL 1409
>At1g36590 hypothetical protein
Length = 1499
Score = 71.6 bits (174), Expect = 3e-13
Identities = 54/201 (26%), Positives = 92/201 (44%), Gaps = 15/201 (7%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
VSD + F S +EF G+ + +S HPQ++GQ + N+ ++ L+ + W
Sbjct: 1217 VSDRDVVFTSEFWREFFTLQGVALKLTSAYHPQSDGQTEVVNRCLETYLRCMCHDRPQLW 1276
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYG--ADVMLPVEIDNSSWRTTPKFEGENSSNMA 118
L + + YNT HS++ TPF + YG V LP S + E +
Sbjct: 1277 SKWLALAEYWYNTNYHSSSRMTPFEIVYGQVPPVHLPYLPGESKVAVVARSLQEREDMLL 1336
Query: 119 -VELDLLSETHNEARLKEAAMKQRAAAKYD----TKVKPREMQEGDLVLKKRTGVTGNKL 173
++ L+ H R+K+ A + R +++ VK + ++ +V++ KL
Sbjct: 1337 FLKFHLMRAQH---RMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMR-----ANQKL 1388
Query: 174 SPIWEGPYRILKALGRGAYHL 194
SP + GPY+I+ G AY L
Sbjct: 1389 SPKYFGPYKIIDRCGEVAYKL 1409
>At3g31530 hypothetical protein
Length = 831
Score = 70.5 bits (171), Expect = 6e-13
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 22/128 (17%)
Query: 1 VSDNGMQFASNQTKEFCEEMGIQRRFSSVEHPQTNGQADSANKVIQQGLKRPLSEAKGAW 60
V+DNG QF S + + FC++ GI+ S+ +PQ NGQA++AN
Sbjct: 724 VTDNGSQFISTRFQGFCDKWGIRLSKSTPRYPQGNGQAEAAN------------------ 765
Query: 61 LDELPIVFWSYNTTQHSTTGKTPFRMTYGADVMLPVEIDNSSWR--TTPKFEGENSSNMA 118
EL V W + TT T +TPF YG + ++P E+ S R +P+ + +N+
Sbjct: 766 --ELEGVLWLHRTTPRRATRETPFASIYGTECVIPAEMIVPSLRRSLSPENDPDNTQTPL 823
Query: 119 VELDLLSE 126
ELDL+ E
Sbjct: 824 DELDLIDE 831
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,668,359
Number of Sequences: 26719
Number of extensions: 184836
Number of successful extensions: 553
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 99
length of query: 214
length of database: 11,318,596
effective HSP length: 95
effective length of query: 119
effective length of database: 8,780,291
effective search space: 1044854629
effective search space used: 1044854629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0189.9