BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0189.12
         (963 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g20390 hypothetical protein                                        423  e-118
At2g15410 putative retroelement pol polyprotein                       379  e-105
At2g14400 putative retroelement pol polyprotein                       372  e-103
At2g14380 putative retroelement pol polyprotein                       337  3e-92
At4g03800                                                             312  5e-85
At1g37200 hypothetical protein                                        312  5e-85
At2g13330 F14O4.9                                                     288  1e-77
At3g31530 hypothetical protein                                        221  2e-57
At2g10780 pseudogene                                                  204  1e-52
At2g07660 putative retroelement pol polyprotein                       204  3e-52
At4g10580 putative reverse-transcriptase -like protein                200  4e-51
At2g04670 putative retroelement pol polyprotein                       195  9e-50
At2g14650 putative retroelement pol polyprotein                       188  1e-47
At3g11970 hypothetical protein                                        181  2e-45
At1g36590 hypothetical protein                                        181  2e-45
At2g15100 putative retroelement pol polyprotein                       174  2e-43
At1g37060 Athila retroelment ORF 1, putative                          171  1e-42
At2g13210 pseudogene                                                  162  6e-40
At2g06890 putative retroelement integrase                             162  8e-40
At1g35370 hypothetical protein                                        162  1e-39

>At1g20390 hypothetical protein
          Length = 1791

 Score =  423 bits (1088), Expect = e-118
 Identities = 217/492 (44%), Positives = 308/492 (62%), Gaps = 32/492 (6%)

Query: 25   VKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIGGIVVDQRIARECYCN 84
            VK++++     YN+I+G   ++++ A+ ST    VK+P  NG     +   R  +E    
Sbjct: 645  VKFVVIGKPAVYNVILGTPWIHQMQAIPSTYHQCVKFPTHNG-----IFTLRAPKEA--- 696

Query: 85   AVDRYGKKNASVGHRCSEVETPEESLDPRGEGRVNRPTPIEETKDLKFGEKILKIGTKLS 144
                               +TP  S +     R      I+E+   +     + +G ++S
Sbjct: 697  -------------------KTPSRSYEESELCRTEMVN-IDESDPTR----CVGVGAEIS 732

Query: 145  EEQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKA 204
                  +  LL  N   FAWS + M GIDP    H L ++P  +P+ Q RR++G E+ +A
Sbjct: 733  PSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNVDPTFKPVKQKRRKLGPERARA 792

Query: 205  IQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSID 264
            + +EV KLL A  I E+KYP WL N V+VKK NGKWR+CVD TDLNK CPKDSYPLP ID
Sbjct: 793  VNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHID 852

Query: 265  KLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQ 324
            +LV+   GN LLS MDA+SGY+QI MH+ D++KT+F+T R  YCY+ M FGLKNAGATYQ
Sbjct: 853  RLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDRGTYCYKVMSFGLKNAGATYQ 912

Query: 325  RLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIR 384
            R ++++   Q+GR +EVY+DDM+VKS+   +H E L + F  +  + M+LNP KC+FG+ 
Sbjct: 913  RFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCFDVLNTYGMKLNPTKCTFGVT 972

Query: 385  GGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPF 444
             G+FLG+++T R IE NP + +AI E+ SP N +EVQRL GRI AL+RF+  S DK  PF
Sbjct: 973  SGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRLTGRIAALNRFISRSTDKCLPF 1032

Query: 445  IKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVILQE 504
               LK+   F+W+ + EEAF +LK+ LS PP+L KP  G  L+LY +V DHA+SSV+++E
Sbjct: 1033 YNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVGETLYLYIAVSDHAVSSVLVRE 1092

Query: 505  VDGEQKIVYFVS 516
              GEQ+ +++ S
Sbjct: 1093 DRGEQRPIFYTS 1104



 Score =  247 bits (631), Expect = 2e-65
 Identities = 144/379 (37%), Positives = 207/379 (53%), Gaps = 19/379 (5%)

Query: 601  FLVELTPEEGEKVST-----QWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTS 655
            FL+EL  +  E+  +     +W L+VDGSS+  GS  G+ L  P   VLEQS R +F  +
Sbjct: 1189 FLIELPLQSAERAVSGNRGEEWSLYVDGSSSARGSGIGIRLVSPTAEVLEQSFRLRFVAT 1248

Query: 656  NNQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMG 715
            NN AEYE LIAGL+LA  +QI ++   TDS L+A Q++GE++ K   +  Y++ V+L+  
Sbjct: 1249 NNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQLSGEYEAKNEKMDAYLKIVQLMTK 1308

Query: 716  RLQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIEG----EFVASVDR 771
              +   +  +PR  N  ADALA LA T      R +  E++  P+I+     E V ++  
Sbjct: 1309 DFENFKLSKIPRGDNAPADALAALALTSDSDLRRIIPVESIDKPSIDSTDAVEIVNTIRS 1368

Query: 772  QET--------WMNPIIDILAGEPSDVVKYSKAQRR-EAGHYTLLDGILFRRGFSSPLLR 822
                       W   I D L+       K++  + R +A  YTL+   L +      +L 
Sbjct: 1369 SNAPDPADPTDWRVEIRDYLSDGTLPSDKWTARRLRIKAAKYTLMKEHLLKVSAFGAMLN 1428

Query: 823  CLPPEKYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFT 882
            CL   +   +M E HEG   +H GGR+LA K+ + GFYWPT+  +C  F  KC++CQ   
Sbjct: 1429 CLHGTEINEIMKETHEGAAGNHSGGRALALKLKKLGFYWPTMISDCKTFTAKCEQCQRHA 1488

Query: 883  DLPRAPPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASIT 942
                 P   L    +P+PF  W +D+VGP P +R Q +FILV  DYFTKWVEAE  A+I 
Sbjct: 1489 PTIHQPTELLRAGVAPYPFMRWAMDIVGPMPASR-QKRFILVMTDYFTKWVEAESYATIR 1547

Query: 943  AAKIISFYWKRIVCRFGVP 961
            A  + +F WK I+CR G+P
Sbjct: 1548 ANDVQNFVWKFIICRHGLP 1566


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score =  379 bits (972), Expect = e-105
 Identities = 190/414 (45%), Positives = 264/414 (62%), Gaps = 26/414 (6%)

Query: 103  VETPEESLDPRGEGRVNRPTPIEETKDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLF 162
            V T +E  +P+      + T ++   D     + + I   L  E +  +   L  N   F
Sbjct: 702  VPTQDERPNPQ------KGTVVQVNIDESDPSRCVGIRIDLPSELQNELVNFLRQNAATF 755

Query: 163  AWSHKYMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIK 222
            AWS + MPGID    CH L ++P  +P+ Q RR++G ++ K + +EV KLL A  I E++
Sbjct: 756  AWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVR 815

Query: 223  YPTWLVNVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAY 282
            YP WL N V+VKK NGKWR+C+D TDLNK CPKDS+PLP ID+LV+   GNELLS MDA+
Sbjct: 816  YPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAF 875

Query: 283  SGYHQIKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVY 342
            SGY+QI MHQ+D +KT F+T +  YCY+ MPFGLKNAGATY RL++++F  Q+  +MEVY
Sbjct: 876  SGYNQILMHQNDREKTVFITDQGTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVY 935

Query: 343  VDDMIVKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINP 402
            +DDM+VKS+    H   L + F  + ++NM+LNP KC+FG+  G+FLG+L+T R IE NP
Sbjct: 936  IDDMLVKSLRAEEHITHLRQCFQVLNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANP 995

Query: 403  DKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEE 462
             +  AI ++ SP N +EVQRLIGRI AL+RF+  S DK  PF + L+ N  FEW+ +CEE
Sbjct: 996  KQISAIIDLPSPRNTREVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDEKCEE 1055

Query: 463  AFTRLKEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVILQEVDGEQKIVYFVS 516
                                G  L+LY +V   A+S V+++E  GEQ  +++VS
Sbjct: 1056 --------------------GETLYLYIAVSTSAVSGVLVREDRGEQHPIFYVS 1089



 Score =  197 bits (502), Expect = 2e-50
 Identities = 125/375 (33%), Positives = 179/375 (47%), Gaps = 65/375 (17%)

Query: 651  QFKTSNNQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERV 710
            +F  SNN+AEYEALIAGL+LA  +++  +    DS LVA+Q +G ++ K   +  Y++ V
Sbjct: 1189 RFPASNNEAEYEALIAGLRLAHGIEVKKIQAYCDSQLVASQFSGNYEAKNERMDAYLKVV 1248

Query: 711  RLLMGRLQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSV-----------IQETLANP 759
            R L    +   +  +PR+ N  ADALA LAST  P   R +           IQ T+  P
Sbjct: 1249 RELSYNFEVFELTKIPRSDNAPADALAVLASTSDPDLRRVIPVECIDVPSIKIQGTITKP 1308

Query: 760  NI------------------------------EGEFVASVDRQET--------------- 774
            +                                G  V S D  ++               
Sbjct: 1309 SEYTVIDLTAEQLSIVMVILPPATDRSEDAGPSGNLVCSSDPGQSSGCDRSDDSNRSADS 1368

Query: 775  -------WMNPIIDILAGEPSDVVKYSKAQ-RREAGHYTLLDGILFRRGFSSPLLRCLPP 826
                   W+  I   +A       K++  + R  +  YTL    L R   +  LL CL  
Sbjct: 1369 DSPASTNWIEEIRSYIADRIVPKDKWAARRLRARSAQYTLPHEHLLRWSATGVLLSCLDD 1428

Query: 827  EKYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPR 886
            E+ + VM E+HEG   +H GGR+LA K+ + G YWPT+  +C +FV +C+KCQ       
Sbjct: 1429 EEAQQVMREIHEGAGGNHSGGRALALKIRKHGQYWPTMNADCEKFVARCEKCQGHAPFIH 1488

Query: 887  APPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKI 946
             P   L T   P+PF  W +D++ PFP +R Q K+ILV  DYFTKW EAE  A I + ++
Sbjct: 1489 IPSEVLQTAMPPYPFMRWAMDIIRPFPASR-QKKYILVMTDYFTKWFEAESYARIQSKEV 1547

Query: 947  ISFYWKRIVCRFGVP 961
             +F WK I+C  G+P
Sbjct: 1548 QNFVWKNIICHHGLP 1562


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score =  372 bits (956), Expect = e-103
 Identities = 176/330 (53%), Positives = 238/330 (71%)

Query: 186 GVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRMCVD 245
           G+      RR++G E+ KA+  EV+KLL    IRE++YP WL N V+VKK NGK R+C+D
Sbjct: 461 GISRADVNRRKLGVERAKAVNDEVDKLLKIGSIREVQYPDWLANTVVVKKKNGKDRVCID 520

Query: 246 NTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARV 305
            TDLNK CPKDS+PLP ID+LV+   GNELLS MDA+SGY+QI M+  D++KT F+T R 
Sbjct: 521 FTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRG 580

Query: 306 NYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFG 365
            YCY+ MPFGL+NAGATY RL++++F   VG+ MEVY+DDM++KS+   +H + L E F 
Sbjct: 581 IYCYKVMPFGLRNAGATYPRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFA 640

Query: 366 RIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIG 425
            + ++ M+LNP KC+FG+  G+FLG+++T R IE NP++  A   M SP N KEVQRL G
Sbjct: 641 ILNQYQMKLNPAKCTFGVPSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFKEVQRLTG 700

Query: 426 RITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLP 485
           RI AL+RF+  S DKS PF + LK N  F W+ +CEEAF +LK  L++PPVL KP     
Sbjct: 701 RIAALNRFISRSTDKSLPFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEK 760

Query: 486 LHLYFSVGDHAISSVILQEVDGEQKIVYFV 515
           L+LY SV +HA+S V+++E  GEQK +Y++
Sbjct: 761 LYLYVSVSNHAVSGVLIREDRGEQKPIYYI 790



 Score =  145 bits (367), Expect = 8e-35
 Identities = 89/291 (30%), Positives = 147/291 (49%), Gaps = 39/291 (13%)

Query: 687  LVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVEFVPRAQNQRADALAKLASTRKPG 746
            ++ NQ NG+++ K+  +  Y+  V+ L    ++  +  +PR QN  ADALA LAST  P 
Sbjct: 790  IIVNQFNGDYEAKDSRMEAYLHVVKDLAKNFRKFELIRIPRGQNTTADALAALASTSDPE 849

Query: 747  NNRSVIQETLANPNIEGEFVASV---------DRQETWMN-PIIDILAGEPSDVVKYSKA 796
             N  +  E ++  +I+ E  A V         DR +T +  P +     + + V K +  
Sbjct: 850  VNSIIPVECISERSIKEEKEAFVVTRSRAAARDRGDTAVELPPVKRRKSKEATVPKPAVQ 909

Query: 797  Q--------------RREAGHYTLLD---------------GILFRRGFSSPLLRCLPPE 827
            +              + EA     +D                 L+RRG S P L  +   
Sbjct: 910  ENIGIELIEEVISDAKIEAETEPWVDEDILAPNEHPEPEALNSLYRRGVSDPYLLSIFGP 969

Query: 828  KYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRA 887
              E VM+EVHEG+C SH  GR++A K+ +  +YWPT+  +C ++ ++CK+CQ+   L   
Sbjct: 970  VVEIVMSEVHEGLCGSHSSGRAMAFKIKKMCYYWPTMITDCVKYAQRCKRCQLHAPLIHQ 1029

Query: 888  PPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPL 938
            P     +IS+P+PF  W +D++GP   +   ++++LV  DYF+KW+EAE +
Sbjct: 1030 PSELFSSISAPYPFMRWSMDIIGPLHRSTRGVQYLLVLTDYFSKWIEAEAI 1080


>At2g14380 putative retroelement pol polyprotein
          Length = 764

 Score =  337 bits (863), Expect = 3e-92
 Identities = 157/288 (54%), Positives = 210/288 (72%), Gaps = 1/288 (0%)

Query: 169 MPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLV 228
           M GIDP   CH L ++P  + + Q RR++G E+ KA+  EV+KLL A  I E+KYP WL 
Sbjct: 477 MVGIDPEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLA 536

Query: 229 NVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQI 288
           N V+VKK N KWR+C+D TDLNK CPKDS+PLP ID++V+   GNELLS MDA+SGY+QI
Sbjct: 537 NPVVVKKKNDKWRVCIDFTDLNKACPKDSFPLPHIDRMVEATTGNELLSFMDAFSGYNQI 596

Query: 289 KMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIV 348
            MH+ D++KT+F+  R  YCY+ MPFGLKN GA YQRL++++F  Q+G+ MEVY+DDM+V
Sbjct: 597 PMHKDDQEKTSFIIDRGTYCYKVMPFGLKNVGARYQRLVNQMFAPQLGKTMEVYIDDMLV 656

Query: 349 KSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAI 408
           KS   ++H + L   F  + K+NM+LNP KC FG+  G+FLG+++T R IE NP + +AI
Sbjct: 657 KSTRSADHIDHLKACFETLNKYNMKLNPAKCLFGVTSGEFLGYIVTKRGIEANPKQIRAI 716

Query: 409 QEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKK-NTTFE 455
            +++SP N KEVQRL GRI  L+RF+  S DKS PF + L+  N TFE
Sbjct: 717 LDLQSPRNKKEVQRLTGRIAGLNRFIARSTDKSLPFYQLLRSANKTFE 764


>At4g03800
          Length = 637

 Score =  312 bits (800), Expect = 5e-85
 Identities = 157/337 (46%), Positives = 222/337 (65%), Gaps = 21/337 (6%)

Query: 168 YMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWL 227
           YMP IDP+ ICH L ++P  +P+ Q RR++G E+ KA+  +++KLL    IRE++YP W+
Sbjct: 320 YMPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGSIREVQYPDWV 379

Query: 228 VNVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQ 287
              V+VKK NGK R+C+D TDLNK CPKDS+PLP ID+LV+   GNELL+ MDA+ GY+Q
Sbjct: 380 AITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFLGYNQ 439

Query: 288 IKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMI 347
           I M+  D++KT+F+T R               GATYQ L++++F   + + MEV +DD +
Sbjct: 440 IMMNPEDQEKTSFITDR---------------GATYQWLVNKMFNEHLRKTMEVSIDDTL 484

Query: 348 VKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKA 407
           VKS+   +H + L E F  + ++ M+LN  KC+FG+  G+FLG+++T R IE NP++  A
Sbjct: 485 VKSLKKEDHVKHLGECFEILNQYQMKLNLAKCTFGVPSGEFLGYIVTKRGIEANPNQINA 544

Query: 408 IQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRL 467
             +  S  N KEVQRL GRI +       S DKS PF + LK N  F W+ +CEEAF +L
Sbjct: 545 FLKTPSLRNFKEVQRLTGRIAS------RSTDKSLPFYQILKGNNGFLWDEKCEEAFRQL 598

Query: 468 KEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVILQE 504
           K  L+ PPVLSKP     L+LY  V +HA+S V+++E
Sbjct: 599 KAYLTTPPVLSKPEADEKLYLYVFVSNHAVSGVLVRE 635



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 25  VKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNG 66
           V +++ +   +YN+I+G   + ++ AV ST    +K+P SNG
Sbjct: 263 VDFVVFDKPATYNIILGTPWIFQMKAVPSTYHQWLKFPTSNG 304


>At1g37200 hypothetical protein
          Length = 1564

 Score =  312 bits (800), Expect = 5e-85
 Identities = 176/430 (40%), Positives = 247/430 (56%), Gaps = 19/430 (4%)

Query: 2   VWVKDALDLDTTFGEEENAR----TLSVKYLILETEGS-----YNMIIGRITLNRLCAVI 52
           +W  +  DLD    +    R       +  ++++T  S     +N I+GR  L+ + AV 
Sbjct: 489 LWESETTDLDKPHDDAIVIRIDVGNYKLSRIMIDTGSSVDKAPFNAILGRPWLHAMKAVP 548

Query: 53  STAQLAVKYPLSNGHIGGIVVDQRIARECYCNAVDRYGKKNASV---GHRCSEVETPEES 109
           ST    +K+P   G I  I   QR +R CY  + +   K    V     + +E++T   S
Sbjct: 549 STYHQCIKFPSEKG-IAVIYGSQRSSRRCYMGSYELIKKAELVVLMIEDKLAEMKTVRSS 607

Query: 110 LDPRGEGRVNRPTPIEETKDLKFGEKILKIGTKLSEEQEQRISKLLGDNLDLFAWSHKYM 169
            DP   G   + +  +   D    ++ + +G  L     +     L +N D FAWS   +
Sbjct: 608 -DPSQCGP-QKSSITQVYIDESDPKQCVGVGQDLDPAIREDFITFLKENKDSFAWSSANL 665

Query: 170 PGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVN 229
            GI      H L ++P   PI Q RR++G E+ KA+Q EV++LL    IRE+KYP WL N
Sbjct: 666 QGISLEVTSHELNVDPTYRPIKQKRRKLGPERAKAVQDEVDRLLKIGSIREVKYPDWLAN 725

Query: 230 VVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIK 289
            V+VK  NGKWR+C+D  DLNK CPKDS+PLP ID+LV    G+ELLS MDA+SGY+QI 
Sbjct: 726 PVVVKNKNGKWRVCIDFMDLNKACPKDSFPLPHIDRLVKATAGHELLSFMDAFSGYNQIL 785

Query: 290 MHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVK 349
           M   D++KT F+T     CY+ MPFGLKN GATYQRL++R+F  Q+G+ ME+Y+DDM+VK
Sbjct: 786 MRPDDQEKTAFITD----CYKVMPFGLKNTGATYQRLVNRMFADQLGKTMELYIDDMLVK 841

Query: 350 SVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQ 409
           S    +H   L E F  + K  M+LNPEKCSFG+  G+FLG+L+T R IE NP +  A  
Sbjct: 842 SAHEKDHLPQLRECFKILNKFEMKLNPEKCSFGVPSGEFLGYLVTQRGIEANPKQIAAFI 901

Query: 410 EMKSPSNVKE 419
           +M SP   ++
Sbjct: 902 DMPSPKMARD 911



 Score =  194 bits (492), Expect = 3e-49
 Identities = 124/415 (29%), Positives = 201/415 (47%), Gaps = 64/415 (15%)

Query: 601  FLVEL--TPEEGEKVSTQWILFVDGSSNDNGSEAGVTLQGPGELVLEQSLRFQFKTSNNQ 658
            F++EL     +G   + +W+L VDGSSN  GS  G+ L  P   V+EQS R  F  SNN+
Sbjct: 1023 FVIELPLADLDGTNSNKKWLLHVDGSSNRQGSGEGIQLTSPTGEVIEQSFRLGFNASNNE 1082

Query: 659  AEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQ 718
            +EYEALI G+KLA  ++I  +   +DS LV +Q +GE++ K+  +  Y+E V+ L  + +
Sbjct: 1083 SEYEALIDGIKLAQGMRIRDIHAHSDSQLVTSQFHGEYEAKDERMEAYLELVKTLTQQFE 1142

Query: 719  QVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIE---------------- 762
               +  +PR +N   DALA LAST  P   R +  E + +P+I+                
Sbjct: 1143 SFELTRIPRGENTSTDALAALASTLDPFVKRIIPVEGIEHPSIDLTVKHAGMETSATCNF 1202

Query: 763  -------------------------------GEFVASVDRQ--ETWMNPIIDILAGEPSD 789
                                            E +AS + +    W  PIID +    + 
Sbjct: 1203 TRVTRSTTAAARALAAAAEAGAAEEEAKLRTPEQLASYEPEPYNDWRIPIIDYIERGITP 1262

Query: 790  VVKY-SKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGVCASHIGGR 848
              K+ ++  + ++  Y +++G L +R  + P + C   ++ + +M  +HEG C SH  GR
Sbjct: 1263 PDKWETRKLKAQSARYCIMEGRLMKRSVAGPYMVCTYGQQTKDLMKSMHEGQCGSHYSGR 1322

Query: 849  SLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMWGVDL 908
            +L   +L           +C     +C KCQ        PP ++ +ISSP+PF  W +D+
Sbjct: 1323 TLRCIML----------ADCIAHSLRCDKCQRHAPTLHQPPEEMSSISSPYPFMKWSMDV 1372

Query: 909  VGPFPTA--RSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRIVCRFGVP 961
            V P   +  + ++K +LV  DY TKW+E +    +T  ++  F  + IV R G+P
Sbjct: 1373 VRPMEASGGKKRLKNLLVLTDYSTKWIEGKAFQQVTEKQVEVFLLENIVYRHGIP 1427


>At2g13330 F14O4.9
          Length = 889

 Score =  288 bits (737), Expect = 1e-77
 Identities = 193/541 (35%), Positives = 282/541 (51%), Gaps = 58/541 (10%)

Query: 237 NGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDED 296
           NGKWR+C+D  DLNK CPKDS+PLP ID+LV+  + +E LS MDA+ GY+QI M +  ++
Sbjct: 291 NGKWRVCIDFRDLNKACPKDSFPLPHIDRLVEATVEHEKLSFMDAFYGYNQILMRRDGQE 350

Query: 297 KTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNH 356
           KT F+T R  Y Y+ MPFGLKNAG TYQRL++R+F  Q+G+ +EVY+DDM+VKS    +H
Sbjct: 351 KTAFITDRGTYYYKVMPFGLKNAGTTYQRLVNRMFVDQLGKTIEVYIDDMLVKSAHEKDH 410

Query: 357 HEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSN 416
              L E F  + K  M+LNPEKCSF ++  +FL +L+T R IE NP +  A  EM SP  
Sbjct: 411 VPQLRECFKILIKFEMKLNPEKCSFEVQSREFLEYLVTERGIEANPKQIAAFIEMPSPKM 470

Query: 417 VKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPV 476
            +EVQRL GRI AL+ F+  S +K  PF + L+K   F+WN +CE+AF +LK  L+ PP+
Sbjct: 471 AREVQRLTGRIPALNGFISRSANKCVPFYQPLRKGKEFDWNKDCEQAFKQLKAYLTEPPI 530

Query: 477 LSKPVQGLPLHLYFSVGDH--AISSVILQEVDGEQKI-VYFVSYHFRGRRSGIRR----- 528
           L+KP +G PL+LY +      A+  + L  V   +K+ +YF S+      S   R     
Sbjct: 531 LAKPEKGEPLYLYTNRDKRCPAMEKLALTVVMSVRKLRLYFQSHPIVVMTSQPIRTILHS 590

Query: 529 --*KKRCSPSSSPPDAYDRIFKAFR*K*ELTFL*DRCCRSQTFQ-EGSSRDQWSCRNMDC 585
                R +  +     YD  ++  R   +   L D   +      +G++ ++    ++D 
Sbjct: 591 LTQSGRLAKWAIELREYDIEYRT-RTSLKAQVLADFVIKLPLADLDGTNSNKKWLLHVDG 649

Query: 586 SMTKGGRSTHIP*QIFLVELTPEEGEKVSTQWILFVDGSSNDNGSE---AGVTL-QGPGE 641
           S  + G    I       +LT   GE +     L  + S+N++  E   AG+ L Q  G 
Sbjct: 650 SSNRQGSGVGI-------QLTSPTGEVIEQSLQLGFNASNNESEYEALIAGIKLAQEKGI 702

Query: 642 LVLEQSLRFQFKTSNNQAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKEL 701
             +      Q  TS    EYEA                                   K+ 
Sbjct: 703 REIHAYSDSQLVTSQFHGEYEA-----------------------------------KDE 727

Query: 702 ALIKYVERVRLLMGRLQQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNI 761
            +  Y+E V+ L  + +   +  +PR +N  AD LA LAST  P   R +  E + + +I
Sbjct: 728 RMEAYLELVKTLAQQFESFKLTRIPRGENTSADTLAALASTSDPFVKRIIPVEGIEHTSI 787

Query: 762 E 762
           +
Sbjct: 788 D 788



 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 27  YLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIGGIVVDQRIARECYCNAV 86
           +L+++ +  +N I+GR  L+ + AV ST    +K+P   G I  +   QR +R+CY  + 
Sbjct: 141 FLVVDKKAPFNAILGRPWLHVMKAVPSTYHQCIKFPSYKG-IAVVYGSQRSSRKCYMGSY 199

Query: 87  DRYGKKN---ASVGHRCSEVETPEESLDPRGEGRVNRPTPIEETKDLKFGEKILKIGTKL 143
           +   K +     +    +E++T   SLDP   G   +    +   D    ++ + IG  L
Sbjct: 200 EDIKKADPVVLMIEDELAEMKT-VRSLDPSQRG-TRKSLITQVCIDESDPKRCVGIGHDL 257

Query: 144 SEEQEQRISKLLGDNLDLFAWSHKYMPGI 172
                + +   L +N D FAWS   + GI
Sbjct: 258 DLTVREDLITFLKENKDSFAWSSANLQGI 286


>At3g31530 hypothetical protein
          Length = 831

 Score =  221 bits (563), Expect = 2e-57
 Identities = 110/254 (43%), Positives = 164/254 (64%), Gaps = 13/254 (5%)

Query: 273 NELL--SLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRV 330
           N+LL  S   +++ +  + M+  D++KT F T +  +CY+ MPFGLKNAGATY+R ++++
Sbjct: 77  NQLLETSYCHSWTLFVVMMMNPEDQEKTAFYTEQGIFCYRVMPFGLKNAGATYERFVNKI 136

Query: 331 FEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLG 390
           F  Q+G+ MEVY+DDM+VKS+   +H   L E F ++  +N++LNP KC FG+R G    
Sbjct: 137 FALQIGKTMEVYIDDMLVKSMTEKDHISHLRECFKQLNLYNVKLNPAKCRFGVRSG---- 192

Query: 391 FLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKK 450
                  IE NP + +A+  M SP N +EVQ L GR+ AL+RF+  S +K   F   L++
Sbjct: 193 -------IEANPKQIEALLGMASPQNKREVQCLTGRVAALNRFISRSTEKCLAFYDVLRR 245

Query: 451 NTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVILQEVDGEQK 510
           N  FEW + CEEAF  LK+ L+ PP+L+KPV G P +LY +V D A+S  +++E  GEQK
Sbjct: 246 NKKFEWTTRCEEAFQELKKYLATPPILAKPVIGEPQYLYVAVSDTAVSGELVREDRGEQK 305

Query: 511 IVYFVSYHFRGRRS 524
           ++++VS  F    S
Sbjct: 306 LIFYVSQTFTSAES 319



 Score =  178 bits (451), Expect = 1e-44
 Identities = 128/379 (33%), Positives = 183/379 (47%), Gaps = 72/379 (18%)

Query: 601 FLVELTPEEGEK--VSTQWILFVDGSSNDNGSEAGVTLQGP-GELVLEQSLRFQFKTSNN 657
           F+VEL  +E  +  + T W+L VDGSS+  GS  G+ L  P GE             +NN
Sbjct: 396 FIVELPTKEARENPLDTTWLLHVDGSSSKQGSGVGIRLTSPTGE------------ATNN 443

Query: 658 QAEYEALIAGLKLAIEVQIDSLPVRTDSPLVANQVNGEFQVKELALIKYVERVRLLMGRL 717
            AEYEAL+AGL LA  ++I       DS L+ANQ NGE+  ++  +  Y+  V+ L    
Sbjct: 444 VAEYEALVAGLNLAWGLKIGKTRAFCDSQLIANQFNGEYTTQDKKMEAYLIHVQNLAKNF 503

Query: 718 QQVVVEFVPRAQNQRADALAKLASTRKPGNNRSVIQETLANPNIE---GEFVASV----- 769
            +  +  +PR +N  ADALA LAST      R +  E +  P+IE    E V  +     
Sbjct: 504 DEFELTRIPRGENTSADALAALASTSDTSLKRVIPVEFIEKPSIELGKEEHVLPIQISAD 563

Query: 770 -----DRQETWMNPIIDILAGE--PSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLR 822
                D    WM PII  ++    PSD  K  K  + +A  + L+D  L++   S PL+ 
Sbjct: 564 QDDPDDCNSEWMEPIISYISEGKLPSDKWKARKL-KAQAARFVLVDTKLYKWRLSGPLMT 622

Query: 823 CLPPEKYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFT 882
           C+  E    +M E+H G   SH                 PTI +                
Sbjct: 623 CVEAEAICKIMKEIHSG---SHA----------------PTIHQ---------------- 647

Query: 883 DLPRAPPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASIT 942
                P   L +I+SP+PF  W +D++GP   ++ Q K +LV  DYF+KW+EAE  ASI 
Sbjct: 648 -----PAELLSSIASPYPFMRWSMDIIGPMHPSK-QKKLVLVLTDYFSKWIEAESYASIK 701

Query: 943 AAKIISFYWKRIVCRFGVP 961
            A++ +F  K I+CR G+P
Sbjct: 702 DAQVENFVLKHILCRHGIP 720



 Score = 32.3 bits (72), Expect = 1.3
 Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 8/72 (11%)

Query: 22 TLSVKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSN------GH--IGGIVV 73
          T  V + I +    YN IIG   LN+  AV ST  L +K+P S+      GH     +  
Sbjct: 16 TKIVDFSITDQPTVYNAIIGTPWLNQFRAVASTYHLCLKFPTSDSVWEKLGHERAEAVKA 75

Query: 74 DQRIARECYCNA 85
          + ++    YC++
Sbjct: 76 ENQLLETSYCHS 87


>At2g10780 pseudogene
          Length = 1611

 Score =  204 bits (520), Expect = 1e-52
 Identities = 108/324 (33%), Positives = 177/324 (54%), Gaps = 1/324 (0%)

Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
           + L PG  PI++   RM   +   +++++ +LL   FIR    P W   V+ VKK +G +
Sbjct: 651 IELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSP-WGAPVLFVKKKDGSF 709

Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
           R+C+D   LNK   K+ YPLP ID+L+D   G +  S +D  SGYHQI +  +D  KT F
Sbjct: 710 RLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAF 769

Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
            T   ++ +  MPFGL NA A + ++M+ VF   +   + ++++D++V S     H E L
Sbjct: 770 RTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWEAHQEHL 829

Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
                R+++H +     KCSF  R   FLG +I+ + + ++P+K ++I+E   P N  E+
Sbjct: 830 RAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEI 889

Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
           +  +G      RF++     + P  +   K+T F W+ ECE++F  LK ML+  PVL  P
Sbjct: 890 RSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTNAPVLVLP 949

Query: 481 VQGLPLHLYFSVGDHAISSVILQE 504
            +G P  +Y       +  V++Q+
Sbjct: 950 EEGEPYTVYTDASIVGLGCVLMQK 973



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 823  CLPPEKY--EAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQV 880
            C+P ++   E ++ E H+   + H G   +  + L+  ++W  ++K+ A +V KC  CQ+
Sbjct: 1152 CVPNDRALKEEILREAHQSKFSIHPGSNKMY-RDLKRYYHWVGMKKDVARWVAKCPTCQL 1210

Query: 881  FTDLPRAPPGQLVTISSP-WPFAMWGVDLVGPFPTA-RSQMKFILVAVDYFTKWVEAEPL 938
                 + P G L  +  P W +    +D V   PT  +S+   + V VD  TK      +
Sbjct: 1211 VKAEHQVPSGLLQNLPIPEWKWDHITMDFVTGLPTGIKSKHNAVWVVVDRLTKSAHFMAI 1270

Query: 939  ASITAAKIIS-FYWKRIVCRFGVP 961
            +    A+II+  Y   IV   G+P
Sbjct: 1271 SDKDGAEIIAEKYIDEIVRLHGIP 1294


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  204 bits (518), Expect = 3e-52
 Identities = 109/324 (33%), Positives = 176/324 (53%), Gaps = 1/324 (0%)

Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
           + L PG  PI++   RM   +   +++++ +LLA  FIR    P W   V+ VKK +G +
Sbjct: 146 IELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSP-WGAPVLFVKKKDGSF 204

Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
           R+C+D   LNK   K+ YPLP ID+L+D   G +  S +D  SGYHQI +  +D  KT F
Sbjct: 205 RLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTDVRKTAF 264

Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
            T   ++ +  MPFGL NA A + ++M+ VF   +   + +++DD++V S     H E L
Sbjct: 265 RTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWEAHQEHL 324

Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
                R+++H +     K SF  R   FLG +I+ + + ++P+K ++I+E   P N  E+
Sbjct: 325 RAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWPRPRNATEI 384

Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
           +  +G      RF++     + P  +   K+T F W+ ECE++F  LK ML   PVL  P
Sbjct: 385 RSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLINAPVLVLP 444

Query: 481 VQGLPLHLYFSVGDHAISSVILQE 504
            +G P  +Y       +  V++Q+
Sbjct: 445 EEGEPYTVYTDASIVGLGCVLMQK 468



 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 6/144 (4%)

Query: 823 CLPPEKY--EAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQV 880
           C+P ++   E ++ E H+   + H G   +  + L+  ++W  +RK+ A +V KC  CQ+
Sbjct: 544 CVPNDRALKEEILREAHQSKFSIHPGSNKMY-RDLKRYYHWVGMRKDVARWVAKCPTCQL 602

Query: 881 FTDLPRAPPGQLVTIS-SPWPFAMWGVDLVGPFPTA-RSQMKFILVAVDYFTKWVEAEPL 938
                + P G L  +  S W +    +D V   PT  +S+   + V VD  TK      +
Sbjct: 603 VKAEHQVPSGLLQNLPISEWKWDHITMDFVTRLPTGIKSKHNAVWVVVDRLTKSAHFMAI 662

Query: 939 ASITAAKIIS-FYWKRIVCRFGVP 961
           +    A+II+  Y   I+   G+P
Sbjct: 663 SDKDGAEIIAEKYIDEIMRLHGIP 686


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  200 bits (508), Expect = 4e-51
 Identities = 106/323 (32%), Positives = 174/323 (53%), Gaps = 1/323 (0%)

Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
           + L PG  P+++   RM   +   +++++  LL   FIR    P W   V+ VKK +G +
Sbjct: 483 IELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSP-WGAPVLFVKKKDGSF 541

Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
           R+C+D  +LN+   K+ YPLP ID+L+D   G    S +D  SGYHQI + ++D  KT F
Sbjct: 542 RLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 601

Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
            T   ++ +  MPFGL NA A + RLM+ VF+  +   + +++DD++V S         L
Sbjct: 602 RTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEQEVHL 661

Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
                ++++  +     KCSF  R   FLG ++++  + ++P+K +AI++   P+N  E+
Sbjct: 662 RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 721

Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
           +  +G      RF+      + P  K   K+  F W+ ECEE F  LKEML++ PVL+ P
Sbjct: 722 RSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTSTPVLALP 781

Query: 481 VQGLPLHLYFSVGDHAISSVILQ 503
             G P  +Y       +  V++Q
Sbjct: 782 EHGQPYMVYTDASRVGLGCVLMQ 804



 Score = 29.6 bits (65), Expect = 8.5
 Identities = 27/109 (24%), Positives = 48/109 (43%), Gaps = 3/109 (2%)

Query: 855  LRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSP-WPFAMWGVDLVGPFP 913
            L+  + W  ++ + A +V +C  CQ+     +   G L ++  P W +    +DLV    
Sbjct: 965  LKRYYQWVGMKMDVANWVAECDVCQLVKAEHQVLGGMLQSLPIPEWKWDFITMDLVVGLR 1024

Query: 914  TARSQMKFILVAVDYFTKWVEAEPLASITAAKIIS-FYWKRIVCRFGVP 961
             +R++   I V VD  TK      +     A +++  +   IV   GVP
Sbjct: 1025 VSRTK-DAIWVIVDRLTKSAHFLAIRKTDGAAVLAKKFVSEIVKLHGVP 1072


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  195 bits (496), Expect = 9e-50
 Identities = 108/340 (31%), Positives = 177/340 (51%), Gaps = 5/340 (1%)

Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
           + L PG  P+++   RM   +   +++++  LL   FIR    P W   V+ VKK +G +
Sbjct: 509 IELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSP-WGAPVLFVKKKDGSF 567

Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
           R+C+D   LN    K+ YPLP ID+L+D   G    S +D  SGYHQI + ++D  KT F
Sbjct: 568 RLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEADVRKTAF 627

Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
            T   ++ +  MPF L NA A + RLM+ VF+  +   + +++DD++V S     H   L
Sbjct: 628 RTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPEEHEVHL 687

Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
                ++++  +     KCSF  R   FLG ++++  + ++P+K +AI++   P+N  E+
Sbjct: 688 RRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWPRPTNATEI 747

Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
           +  +       RF+      + P  K   K+  F W+ ECEE F  LKEML++ PVL+ P
Sbjct: 748 RSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALP 807

Query: 481 VQGLPLHLYFSVGDHAISSVILQEVDGEQKIVYFVSYHFR 520
             G P  +Y       +  V++Q      K++ + S   R
Sbjct: 808 EHGQPYMVYTDASRVGLGCVLMQ----RGKVIAYASRQLR 843


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  188 bits (477), Expect = 1e-47
 Identities = 105/340 (30%), Positives = 175/340 (50%), Gaps = 17/340 (5%)

Query: 181 LALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKW 240
           + L PG  P+++   RM   +   +++++  LL A              V+ VKK +G +
Sbjct: 470 IELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAP-------------VLFVKKKDGSF 516

Query: 241 RMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTF 300
           R+C+D   LN    K+ YPLP ID+L+D   G    S +D  SGYH I + ++D  KT F
Sbjct: 517 RLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEADVRKTAF 576

Query: 301 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDL 360
            T   ++ +  MPFGL NA A + RLM+ VF+  +   + +++DD++V S     H   L
Sbjct: 577 RTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLEEHEVHL 636

Query: 361 MEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEV 420
                ++++  +     KCSF  R   FLG ++++  + ++P+K +AI++  +P+N  E+
Sbjct: 637 RRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTPTNATEI 696

Query: 421 QRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKP 480
           +  +G      RF+      + P  K   K+  F W+ ECEE F  LKEML++ PVL+ P
Sbjct: 697 RSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTSTPVLALP 756

Query: 481 VQGLPLHLYFSVGDHAISSVILQEVDGEQKIVYFVSYHFR 520
             G P  +Y       +  V++Q      K++ + S   R
Sbjct: 757 EHGEPYMVYTDASGVGLGCVLMQ----RGKVIAYASRQLR 792



 Score = 33.1 bits (74), Expect = 0.77
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 866  KECAEFVRKCKKCQVFTDLPRAPPGQLVTISSP-WPFAMWGVDLVGPFPTARSQMKFILV 924
            ++ A +V +C  CQ+     + P G L ++  P W +    +D V   P +R++   I V
Sbjct: 941  EDVANWVAECDVCQLVKAEHQVPGGMLQSLPIPEWKWDFITIDFVVGLPVSRTK-DAIWV 999

Query: 925  AVDYFTKWVEAEPLASITAAKIIS-FYWKRIVCRFGVP 961
             VD  TK      +     A +++  Y   IV   GVP
Sbjct: 1000 IVDRLTKSAHFLAIRKTDGAAVLAKKYVSEIVKLHGVP 1037


>At3g11970 hypothetical protein
          Length = 1499

 Score =  181 bits (459), Expect = 2e-45
 Identities = 117/382 (30%), Positives = 196/382 (50%), Gaps = 6/382 (1%)

Query: 124 IEETKDLKFGEKILKIGTKLSE-EQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLA 182
           ++E  +   GE +  I    SE  +E  + ++L +  D+F       P  + +   H++ 
Sbjct: 538 VQEVSESTEGE-LCTINALTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHN--HKIK 594

Query: 183 LNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRM 242
           L  G  P+ Q   R    ++  I + V  LL    ++    P +   VV+VKK +G WR+
Sbjct: 595 LLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRL 653

Query: 243 CVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMT 302
           CVD  +LN    KDS+P+P I+ L+D   G  + S +D  +GYHQ++M   D  KT F T
Sbjct: 654 CVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKT 713

Query: 303 ARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLME 362
              ++ Y  MPFGL NA AT+Q LM+ +F+  + + + V+ DD++V S     H + L +
Sbjct: 714 HSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQ 773

Query: 363 AFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQR 422
            F  ++ + +     KC+F +   ++LG  I+++ IE +P K KA++E   P+ +K+++ 
Sbjct: 774 VFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRG 833

Query: 423 LIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQ 482
            +G      RF+   G  + P +  L K   FEW +  ++AF  LK  L   PVLS P+ 
Sbjct: 834 FLGLAGYYRRFVRSFGVIAGP-LHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLF 892

Query: 483 GLPLHLYFSVGDHAISSVILQE 504
                +        I +V++QE
Sbjct: 893 DKQFVVETDACGQGIGAVLMQE 914



 Score = 40.8 bits (94), Expect = 0.004
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 10/105 (9%)

Query: 847  GRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMW-- 904
            GR +  + ++  FYW  + K+   ++R C  CQ     P A PG L  +  P P  +W  
Sbjct: 1098 GRDVTHQRVKGLFYWKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL--PIPDTIWSE 1155

Query: 905  -GVDLVGPFPTARSQMKFILVAVDYFTKWVE----AEPLASITAA 944
              +D +   P +  +   I+V VD  +K       + P +++T A
Sbjct: 1156 VSMDFIEGLPVSGGK-TVIMVVVDRLSKAAHFIALSHPYSALTVA 1199


>At1g36590 hypothetical protein
          Length = 1499

 Score =  181 bits (459), Expect = 2e-45
 Identities = 117/382 (30%), Positives = 196/382 (50%), Gaps = 6/382 (1%)

Query: 124 IEETKDLKFGEKILKIGTKLSE-EQEQRISKLLGDNLDLFAWSHKYMPGIDPNFICHRLA 182
           ++E  +   GE +  I    SE  +E  + ++L +  D+F       P  + +   H++ 
Sbjct: 538 VQEVSESTEGE-LCTINALTSELGEESVVEEVLNEYPDIFIEPTALPPFREKHN--HKIK 594

Query: 183 LNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANGKWRM 242
           L  G  P+ Q   R    ++  I + V  LL    ++    P +   VV+VKK +G WR+
Sbjct: 595 LLEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSP-YASPVVLVKKKDGTWRL 653

Query: 243 CVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMT 302
           CVD  +LN    KDS+P+P I+ L+D   G  + S +D  +GYHQ++M   D  KT F T
Sbjct: 654 CVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRAGYHQVRMDPDDIQKTAFKT 713

Query: 303 ARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLME 362
              ++ Y  MPFGL NA AT+Q LM+ +F+  + + + V+ DD++V S     H + L +
Sbjct: 714 HSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFFDDILVYSSSLEEHRQHLKQ 773

Query: 363 AFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQR 422
            F  ++ + +     KC+F +   ++LG  I+++ IE +P K KA++E   P+ +K+++ 
Sbjct: 774 VFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPAKIKAVKEWPQPTTLKQLRG 833

Query: 423 LIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQ 482
            +G      RF+   G  + P +  L K   FEW +  ++AF  LK  L   PVLS P+ 
Sbjct: 834 FLGLAGYYRRFVRSFGVIAGP-LHALTKTDAFEWTAVAQQAFEDLKAALCQAPVLSLPLF 892

Query: 483 GLPLHLYFSVGDHAISSVILQE 504
                +        I +V++QE
Sbjct: 893 DKQFVVETDACGQGIGAVLMQE 914



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 27/106 (25%), Positives = 48/106 (44%), Gaps = 10/106 (9%)

Query: 847  GRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMW-- 904
            GR +  + ++  FY   + K+   ++R C  CQ     P A PG L  +  P P  +W  
Sbjct: 1098 GRDVTHQRVKGLFYSKGMIKDIQAYIRSCGTCQQCKSDPAASPGLLQPL--PIPDTIWSE 1155

Query: 905  -GVDLVGPFPTARSQMKFILVAVDYFTKWVE----AEPLASITAAK 945
              +D +   P +  +   I+V VD  +K       + P +++T A+
Sbjct: 1156 VSMDFIEGLPVSGGK-TVIMVVVDRLSKAAHFIALSHPYSALTVAQ 1200


>At2g15100 putative retroelement pol polyprotein
          Length = 1329

 Score =  174 bits (442), Expect = 2e-43
 Identities = 81/151 (53%), Positives = 108/151 (70%)

Query: 169 MPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLV 228
           M GI    I H L ++P  +P+ Q RR++G ++ +A+  EV +LL    IRE+KYP WL 
Sbjct: 412 MTGISTEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLA 471

Query: 229 NVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQI 288
           N V+VKK NGKWR+CVD TDLNK C KD +PLP ID+LV+   G+E+LS MDA+SGY+QI
Sbjct: 472 NPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMDAFSGYNQI 531

Query: 289 KMHQSDEDKTTFMTARVNYCYQTMPFGLKNA 319
            M+  D++KT+F+T    Y Y+ MPFGLKNA
Sbjct: 532 LMNPEDQEKTSFITECGTYYYKVMPFGLKNA 562



 Score =  139 bits (349), Expect = 1e-32
 Identities = 92/336 (27%), Positives = 150/336 (44%), Gaps = 72/336 (21%)

Query: 683  TDSPLVANQVNGEFQVKELALIKYVERVRLLMGRLQQVVVEFVPR--------------- 727
            +D+P  AN+ +GE++ K+  +  Y+  VR + GR +Q  +  +PR               
Sbjct: 784  SDAP-TANRYSGEYEAKDACMEAYLNLVREVSGRFEQFELTRIPRAENSAANALAALAST 842

Query: 728  ------------------------------AQNQRADALAKLASTRKPGNNRSVIQ---- 753
                                          A  +R DA +      + G++  +      
Sbjct: 843  FEVTLPRVIPVETISQPSIRLDEISFVTTRAMRRRLDAQSAENGLHQLGDDEEISDAVHP 902

Query: 754  -ETLANPNIEGEFVASVDRQET------WMNPIIDILAGEPSDVVKYSKAQ-RREAGHYT 805
             E + N ++     A +  Q        W  PI D +        K++  + +     + 
Sbjct: 903  TEIVENQSLPDNHNAPLPDQPPHDWGADWREPIRDYILNGTLPAEKWAARKLKATCARFC 962

Query: 806  LLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGVCASHIGGRSLASKVLRAGFYWPTIR 865
            + + IL+RR FS+P   C+  E+   VM EVH+G C +H GGRSLA KV + G+YWPT+ 
Sbjct: 963  IANDILYRRIFSAPDAVCIFGEQTRTVMKEVHDGTCGNHTGGRSLAFKVRKYGYYWPTLV 1022

Query: 866  KECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMWGVDLVGPFPTARSQMKFILVA 925
             +C  + RKC++CQ    L   P   L T+S+P+PF  W +D+VGP   +          
Sbjct: 1023 ADCEAYARKCEQCQKHAPLILQPAELLTTVSAPYPFMKWLMDIVGPLHVS---------- 1072

Query: 926  VDYFTKWVEAEPLASITAAKIISFYWKRIVCRFGVP 961
                T+ VEA   ++IT  ++ +F WK I+CR G+P
Sbjct: 1073 ----TRGVEAAAYSNITHVQVWNFIWKDIICRHGLP 1104



 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 44/195 (22%), Positives = 82/195 (41%), Gaps = 8/195 (4%)

Query: 327 MDRVFEGQVGRNMEVYVDDMI-VKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRG 385
           +DR+ E   G  M  ++D       +L +   ++          +  ++ P    FG++ 
Sbjct: 506 IDRLVESTTGHEMLSFMDAFSGYNQILMNPEDQEKTSFITECGTYYYKVMP----FGLKN 561

Query: 386 GKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSAPFI 445
             +     T  R E   DK   + ++ S         +    T      ++   +  PF+
Sbjct: 562 AVYFRCHRTRNRSEFEADKRFPVNDLTSQYKGSPTIDMSSGSTEQIHIPIYR--QVFPFL 619

Query: 446 KCLKK-NTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHLYFSVGDHAISSVILQE 504
               K +  F WN  CEEAF +LK  LS P VL+K   G  L LY +V + A++ V ++ 
Sbjct: 620 HFTAKISKGFIWNESCEEAFKQLKRYLSEPSVLAKREFGEQLFLYIAVSESAVTGVQVRV 679

Query: 505 VDGEQKIVYFVSYHF 519
              +++ +++V   +
Sbjct: 680 ERSDKRPIFYVKTRY 694



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (52%)

Query: 25  VKYLILETEGSYNMIIGRITLNRLCAVISTAQLAVKYPLSNGHIGGI 71
           V++ + +   +YN+I+G   L  +  V ST    VK+P   G + GI
Sbjct: 369 VEFTVFDRPAAYNVILGTPWLYEMKVVPSTYHQCVKFPTPVGKMTGI 415


>At1g37060 Athila retroelment ORF 1, putative
          Length = 1734

 Score =  171 bits (434), Expect = 1e-42
 Identities = 113/406 (27%), Positives = 186/406 (44%), Gaps = 25/406 (6%)

Query: 101  SEVETPEESLDPRGEGRVNRPTPIEETKDLKFGEKILKIGTKLSEEQEQRISKLLGDNLD 160
            SE++ P+  L P  +G       +  T  +   +++      L   +  +  K +G +LD
Sbjct: 818  SEIKAPKVDLKPLPKGLRYVFLGLNSTYPVIVNDELTADQVNLLITELMKYRKAIGYSLD 877

Query: 161  LFAWSHKYMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIRE 220
                    + GI P    HR+ L        + +RR+    ++ +++E+ KLL A  I  
Sbjct: 878  -------DIKGISPTLCTHRIHLENESYSSIEPQRRLNPNLKEVVKKEILKLLDAGVIYP 930

Query: 221  IKYPTWLVNVVIVKKANGKW------------------RMCVDNTDLNKTCPKDSYPLPS 262
            I   TW+  V  V K  G                    RMC++   LN    K+ +PLP 
Sbjct: 931  ISDSTWVSPVHCVPKKGGMTVVKNSKDELIPTRTITGHRMCIEYRKLNVASRKEHFPLPF 990

Query: 263  IDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKTTFMTARVNYCYQTMPFGLKNAGAT 322
            ID +++    +     +D+YSG+ QI +H +D+ KTTF      + Y+ MPFGL NA AT
Sbjct: 991  IDHMLERLANHPYYCFLDSYSGFFQIPIHPNDQGKTTFTCPYGTFAYKRMPFGLCNAPAT 1050

Query: 323  YQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHEDLMEAFGRIQKHNMRLNPEKCSFG 382
            +QR M  +F   +   +EV++DD  V     S+   +L     R ++ N+ LN EKC F 
Sbjct: 1051 FQRCMTSIFSDLIEEMVEVFMDDFSVYGSSFSSCLLNLCRVLKRCEETNLVLNWEKCHFM 1110

Query: 383  IRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVKEVQRLIGRITALSRFLLHSGDKSA 442
            +R G  LG  I+   IE++  K   + +++ P  VK+++  +G       F+      + 
Sbjct: 1111 VREGIVLGRKISEEGIEVDKAKIDVMMQLQPPKTVKDIRSFLGHAGFYRIFIKDFSKLAR 1170

Query: 443  PFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLSKPVQGLPLHL 488
            P  + L K T F ++ EC  AF  +KE L   P++  P    P  +
Sbjct: 1171 PLTRLLCKETEFAFDDECLTAFKLIKEALITAPIVQAPNWDFPFEI 1216



 Score = 87.0 bits (214), Expect = 5e-17
 Identities = 51/178 (28%), Positives = 84/178 (46%), Gaps = 22/178 (12%)

Query: 786  EPSDVVKYSKAQR-REAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGVCASH 844
            EP ++  Y K +  ++  H+   +  L+          C+  ++ E ++   H      H
Sbjct: 1348 EPPNLSSYEKKKFFKDINHFYWDEPYLYTLCKDKIYRTCVSEDEIEGILLHCHGFAYGGH 1407

Query: 845  IGGRSLASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPFAMW 904
                   SK+L+AGF+WP++ K+  EF+ KC   +                     F +W
Sbjct: 1408 FATFKTMSKILQAGFWWPSMFKDAQEFISKCDSFE--------------------NFDVW 1447

Query: 905  GVDLVGPFPTARSQMKFILVAVDYFTKWVEAEPLASITAAKIISFYWKRIVCRFGVPR 962
            G+D +GPFP++    K+ILVA+DY +KWVEA    +  A  ++  +   I  RFGVPR
Sbjct: 1448 GIDFMGPFPSSYGN-KYILVAIDYVSKWVEAIASHTNDARVVLKLFKTIIFPRFGVPR 1504


>At2g13210 pseudogene
          Length = 152

 Score =  162 bits (411), Expect = 6e-40
 Identities = 71/151 (47%), Positives = 104/151 (68%)

Query: 158 NLDLFAWSHKYMPGIDPNFICHRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADF 217
           ++  F WS + +PG+    + H L ++P  +P+ Q RR++G E+ +A++ EV KLL    
Sbjct: 2   DVSTFVWSPEDLPGVSVEIVAHELNVDPTFKPVKQKRRKLGRERAEAVKAEVEKLLRIGS 61

Query: 218 IREIKYPTWLVNVVIVKKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLS 277
           I + KYP WL N V+VKK NGKWR+C+D TDLNK CPKDS+P+  I +LV+   G++LLS
Sbjct: 62  ITKAKYPEWLANPVVVKKKNGKWRVCIDFTDLNKACPKDSFPMSHIGRLVESTSGDKLLS 121

Query: 278 LMDAYSGYHQIKMHQSDEDKTTFMTARVNYC 308
            MDA++GY+QI M+  D++KTTF T +   C
Sbjct: 122 FMDAFAGYNQIMMNSEDQEKTTFYTEQGIVC 152


>At2g06890 putative retroelement integrase
          Length = 1215

 Score =  162 bits (410), Expect = 8e-40
 Identities = 95/288 (32%), Positives = 149/288 (50%), Gaps = 4/288 (1%)

Query: 234 KKANGKWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQS 293
           ++ +G WRMC D   +N    K  +P+P +D ++D   G+ + S +D  SGYHQI+M++ 
Sbjct: 463 RQKDGSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEG 522

Query: 294 DEDKTTFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLG 353
           DE KT F T    Y +  MPFGL +A +T+ RLM+ V    +G  + VY DD++V S   
Sbjct: 523 DEWKTAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESL 582

Query: 354 SNHHEDLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKS 413
             H E L      ++K  +  N +KC+F      FLGF++++  ++++ +K KAI++  S
Sbjct: 583 REHIEHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPS 642

Query: 414 PSNVKEVQRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSA 473
           P  V EV+   G      RF        AP  + +KK+  F+W    EEAF  LK+ L+ 
Sbjct: 643 PKTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTN 702

Query: 474 PPVLSKPVQGLPLHLYFSVGDHAISSVILQEVDGEQKIVYFVSYHFRG 521
            PVL          +        I +V++Q    +QK++ F S    G
Sbjct: 703 APVLILSEFLKTFEIECDASGIGIGAVLMQ----DQKLIAFFSEKLGG 746


>At1g35370 hypothetical protein
          Length = 1447

 Score =  162 bits (409), Expect = 1e-39
 Identities = 104/326 (31%), Positives = 168/326 (50%), Gaps = 10/326 (3%)

Query: 179 HRLALNPGVEPITQTRRRMGNEKEKAIQQEVNKLLAADFIREIKYPTWLVNVVIVKKANG 238
           H++ L  G  P+ Q   R    ++  I + V  ++ +  I+    P +   VV+VKK +G
Sbjct: 570 HKIKLLEGANPVNQRPYRYVVHQKDEIDKIVQDMIKSGTIQVSSSP-FASPVVLVKKKDG 628

Query: 239 KWRMCVDNTDLNKTCPKDSYPLPSIDKLVDGALGNELLSLMDAYSGYHQIKMHQSDEDKT 298
            WR+CVD T+LN    KD + +P I+ L+D   G+ + S +D  +GYHQ++M   D  KT
Sbjct: 629 TWRLCVDYTELNGMTVKDRFLIPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKT 688

Query: 299 TFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSNHHE 358
            F T   ++ Y  M FGL NA AT+Q LM+ VF   + + + V+ DD+++ S     H E
Sbjct: 689 AFKTHNGHFEYLVMLFGLTNAPATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKE 748

Query: 359 DLMEAFGRIQKHNMRLNPEKCSFGIRGGKFLGFLITSRRIEINPDKCKAIQEMKSPSNVK 418
            L   F  ++ H +        F     + LG  I++R IE +P K +A++E  +P+ VK
Sbjct: 749 HLRLVFEVMRLHKL--------FAKGSKEHLGHFISAREIETDPAKIQAVKEWPTPTTVK 800

Query: 419 EVQRLIGRITALSRFLLHSGDKSAPFIKCLKKNTTFEWNSECEEAFTRLKEMLSAPPVLS 478
           +V+  +G      RF+ + G  + P +  L K   F W+ E + AF  LK +L   PVL+
Sbjct: 801 QVRGFLGFAGYYRRFVRNFGVIAGP-LHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLA 859

Query: 479 KPVQGLPLHLYFSVGDHAISSVILQE 504
            PV      +        I +V++Q+
Sbjct: 860 LPVFDKQFMVETDACGQGIRAVLMQK 885



 Score = 40.4 bits (93), Expect = 0.005
 Identities = 41/171 (23%), Positives = 74/171 (42%), Gaps = 20/171 (11%)

Query: 785  GEPSDVVKYSKAQRREAGHYTLLDGILFRRGFSSPLLRCLPPEKYEAVMTEVHEGVCASH 844
            G   D++   +       HY+    IL R+       + + P   E +  ++ + +  S 
Sbjct: 1011 GVLKDIISALQQHPDAKKHYSWSQDILRRKS------KIVVPNDVE-ITNKLLQWLHCSG 1063

Query: 845  IGGRS---LASKVLRAGFYWPTIRKECAEFVRKCKKCQVFTDLPRAPPGQLVTISSPWPF 901
            +GGRS    + + +++ FYW  + K+   F+R C  CQ       A PG L  +  P P 
Sbjct: 1064 MGGRSGRDASHQRVKSLFYWKGMVKDIQAFIRSCGTCQQCKSDNAAYPGLLQPL--PIPD 1121

Query: 902  AMW---GVDLVGPFPTARSQMKFILVAVDYFTKWVE----AEPLASITAAK 945
             +W    +D +   P +  +   I+V VD  +K       A P +++T A+
Sbjct: 1122 KIWCDVSMDFIEGLPNSGGK-SVIMVVVDRLSKAAHFVALAHPYSALTVAQ 1171


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,594,853
Number of Sequences: 26719
Number of extensions: 927363
Number of successful extensions: 2274
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2089
Number of HSP's gapped (non-prelim): 149
length of query: 963
length of database: 11,318,596
effective HSP length: 109
effective length of query: 854
effective length of database: 8,406,225
effective search space: 7178916150
effective search space used: 7178916150
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)