BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0185.17
         (469 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At4g03810 putative retrotransposon protein                            207  8e-54
At2g21460 putative retroelement pol polyprotein                       188  6e-48
At1g37110                                                             181  8e-46
At2g13930 putative retroelement pol polyprotein                       179  4e-45
At2g07550 putative retroelement pol polyprotein                       178  6e-45
At3g45520 copia-like polyprotein                                      175  4e-44
At5g35820 copia-like retrotransposable element                        174  9e-44
At3g29782 hypothetical protein                                        172  4e-43
At1g58140 hypothetical protein                                        169  2e-42
At1g48710 hypothetical protein                                        169  2e-42
At3g61330 copia-type polyprotein                                      169  4e-42
At2g19840 copia-like retroelement pol polyprotein                     164  1e-40
At2g21310 putative retroelement pol polyprotein                       162  4e-40
At3g60170 putative protein                                            160  2e-39
At3g25450 hypothetical protein                                        158  7e-39
At2g05390 putative retroelement pol polyprotein                       153  2e-37
At2g15650 putative retroelement pol polyprotein                       150  1e-36
At1g26990 polyprotein, putative                                       150  1e-36
At4g16870 retrotransposon like protein                                149  4e-36
At2g13940 putative retroelement pol polyprotein                       149  4e-36

>At4g03810 putative retrotransposon protein
          Length = 964

 Score =  207 bits (528), Expect = 8e-54
 Identities = 122/307 (39%), Positives = 177/307 (56%), Gaps = 13/307 (4%)

Query: 147 SGKAV-MTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRD--GEI 203
           SG AV    LYVDD+L+ G D+  ++  K++L + F MKD+GEA  ILGI+I RD   +I
Sbjct: 628 SGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKI 687

Query: 204 IGLSQSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCP--------VAQLEYSKAIR 255
           IGLSQ  YI+KVL +F+  D K    P      L    +CP        ++++ Y+ AI 
Sbjct: 688 IGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSK-TQCPSTHDERERMSKIPYASAIG 746

Query: 256 CLMYAMTCTRPDIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPS-VL 314
            +MYAM  TRPD+A  +   SRY  +P + HW VV  + KYL  T +  L+Y G    V+
Sbjct: 747 SIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVV 806

Query: 315 EGYTYASWVTCVKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV 374
            GYT AS+ T   D  S SG  F L GGAVSW S KQ+ +ADST  AE+IA +  +KE V
Sbjct: 807 SGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVV 866

Query: 375 *LRNLLYEILIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVI 434
            +R  + E+ + P +   + ++CD+   +++A     + KS+HI  R+  ++++I  G +
Sbjct: 867 WIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDV 926

Query: 435 SIVFVRT 441
            I  V T
Sbjct: 927 KISRVST 933


>At2g21460 putative retroelement pol polyprotein
          Length = 1333

 Score =  188 bits (477), Expect = 6e-48
 Identities = 112/319 (35%), Positives = 175/319 (54%), Gaps = 13/319 (4%)

Query: 141  YL**IPSGKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRD 200
            Y+  +  G  V   LYVDDML+   +  ++ + K  LS  FDMKDLG A  ILG++IIR+
Sbjct: 997  YIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRN 1056

Query: 201  GE--IIGLSQSHYIEKVLKKFDHFDCKSVSTPFDQNTKL-------QPHKRCPVAQLEYS 251
             E   + LSQ+ Y+ K+L+ ++  + K V TP   + K+       Q      +  + YS
Sbjct: 1057 REENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYMKSIPYS 1116

Query: 252  KAIRCLMYAMTCTRPDIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYP 311
             A+  +MYAM  TRPD+AY VG +SRY   P+++HW  V  VL+Y+ G++   L Y    
Sbjct: 1117 SAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLGTKLQYKRSS 1176

Query: 312  SV-LEGYTYASWVTCVKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACS 370
               + GY  A    C     S +G +F LGG  +SW S +Q  +A ST  AE+++L    
Sbjct: 1177 DFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSLTEAV 1236

Query: 371  KETV*LRNLLYEILIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLIT 430
            KE V ++ LL E   +    + V I CDSQ  ++ + + V++ +++HI +R+ +++D+I 
Sbjct: 1237 KEAVWMKGLLKE---FGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIA 1293

Query: 431  NGVISIVFVRTVKESCRSF 449
            NG   +V + T K     F
Sbjct: 1294 NGDGDVVKIDTEKNPADIF 1312


>At1g37110 
          Length = 1356

 Score =  181 bits (459), Expect = 8e-46
 Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 10/294 (3%)

Query: 155  LYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRD--GEIIGLSQSHYI 212
            LYVDDMLI G    E+ + K  LS  F+MKD+G A  ILGI I RD  G ++ LSQ  YI
Sbjct: 1036 LYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYI 1095

Query: 213  EKVLKKFDHFDCKSVSTPFDQNTKL----QPHKRCPVAQLEYSKAIRCLMYAMTCTRPDI 268
             KVL +F+    K  + P   + KL    +  +      + YS A+  +MYAM  TRPD+
Sbjct: 1096 RKVLDRFNMSGAKMTNAPVGAHFKLAAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDL 1155

Query: 269  AYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPS-VLEGYTYASWVTCVK 327
            AY +  +SRY   P   HW  V  V++YL G  + +L++       + GY  +++   + 
Sbjct: 1156 AYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAADLD 1215

Query: 328  DHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWP 387
               S SG +F +GG  VSW +  Q  +A ST  AE+IALA  +KE + ++ LL ++    
Sbjct: 1216 RRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDM---G 1272

Query: 388  KLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
                +V I CDSQ  +  + + VY+ +++HI +R ++++D++ +G + ++ + T
Sbjct: 1273 MQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHT 1326


>At2g13930 putative retroelement pol polyprotein
          Length = 1335

 Score =  179 bits (453), Expect = 4e-45
 Identities = 107/299 (35%), Positives = 167/299 (55%), Gaps = 17/299 (5%)

Query: 155  LYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGE--IIGLSQSHYI 212
            LYVDDMLI   + +EV + K  LS  F+MKDLG+A  ILG++I RD +  ++ LSQ  Y+
Sbjct: 1013 LYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYV 1072

Query: 213  EKVLKKFDHFDCKSVSTPFDQNTKL---------QPHKRCPVAQLEYSKAIRCLMYAMTC 263
            +KVL+ F   + K VSTP   + KL         +  +R  +  + Y+  I  +MY+M  
Sbjct: 1073 KKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKI--VPYANTIGSIMYSMIG 1130

Query: 264  TRPDIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPS-VLEGYTYASW 322
            TRPD+AY +G +SR+   P KDHW  V  VL+Y+ GT    L +      +L GY  + +
Sbjct: 1131 TRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQEDFLLRGYCDSDY 1190

Query: 323  VTCVKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYE 382
             +      S +G +F +GG  +SW SK Q  +A S+  AE++AL    KE + L+    E
Sbjct: 1191 GSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAE 1250

Query: 383  ILIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
            +         V +H DSQ  ++ A + V++ +++HI +R   ++D+I  G+I +V + T
Sbjct: 1251 L---GHSQDYVEVHSDSQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLIKVVKIAT 1306


>At2g07550 putative retroelement pol polyprotein
          Length = 1356

 Score =  178 bits (451), Expect = 6e-45
 Identities = 102/315 (32%), Positives = 171/315 (53%), Gaps = 13/315 (4%)

Query: 145  IPSGKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGE-- 202
            +P G  +   +YVDD+L+   +   +   K+ L   F+MKDLG A  ILG++IIRD    
Sbjct: 1024 LPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILGMEIIRDRTLG 1083

Query: 203  IIGLSQSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLE-------YSKAIR 255
            ++ LSQ  Y+ K+L+ ++  + K   TP   + K Q      + + E       YS A+ 
Sbjct: 1084 VLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFMKSVPYSSAVG 1143

Query: 256  CLMYAMTCTRPDIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-L 314
             +MYAM  TRPD+AY VG +SR+   P K+HW  V  VL+Y+ GT+   L Y    S  +
Sbjct: 1144 SIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWVLRYIKGTLKTRLCYKKSSSFSI 1203

Query: 315  EGYTYASWVTCVKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV 374
             GY  A +   +    S +G +F LGG  +SW S  Q  +A ST  +E+++L    KE +
Sbjct: 1204 VGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSTTESEYMSLTEAVKEAI 1263

Query: 375  *LRNLLYEILIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVI 434
             L+ LL +   +    + V I CDSQ  ++ + + V++ +++HI +++  ++++I++G +
Sbjct: 1264 WLKGLLKD---FGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVKYHFIREIISDGTV 1320

Query: 435  SIVFVRTVKESCRSF 449
             ++ + T K     F
Sbjct: 1321 EVLKISTEKNPADIF 1335


>At3g45520 copia-like polyprotein
          Length = 1363

 Score =  175 bits (444), Expect = 4e-44
 Identities = 103/304 (33%), Positives = 166/304 (53%), Gaps = 13/304 (4%)

Query: 156  YVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGE--IIGLSQSHYIE 213
            YVDDML+   ++  ++  K  LS  F+MKDLG A  ILGI+II D E  ++ LSQ  Y+ 
Sbjct: 1042 YVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKILGIEIIIDREAGVLWLSQESYLN 1101

Query: 214  KVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLE-------YSKAIRCLMYAMTCTRP 266
            KVLK F+  + K   TP   + K++      ++  E       YS A+  +MYAM  TRP
Sbjct: 1102 KVLKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSAVGSIMYAMIGTRP 1161

Query: 267  DIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGYTYASWVTC 325
            D+AY VG +SR+   P+K+HW  V  VL+Y+ GT++  L Y       + GY  A +   
Sbjct: 1162 DLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGTVDTRLCYKRNSDFSICGYCDADYAAD 1221

Query: 326  VKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILI 385
            +    S +G +F LGG  +SW S  Q  +A S+   E+++L    KE + L+ LL +   
Sbjct: 1222 LDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEYMSLTEAVKEAIWLKGLLKD--- 1278

Query: 386  WPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRTVKES 445
            +    + V I CDSQ  ++ + + V++ +++HI ++   ++++I +G + +  + T K  
Sbjct: 1279 FGYEQKNVEIFCDSQSAIALSKNNVHHERTKHIDVKFHFIREIIADGKVEVSKISTEKNP 1338

Query: 446  CRSF 449
               F
Sbjct: 1339 ADIF 1342


>At5g35820 copia-like retrotransposable element
          Length = 1342

 Score =  174 bits (441), Expect = 9e-44
 Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 13/304 (4%)

Query: 148  GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGE--IIG 205
            G  +   LYVDDMLI   + ++++K K  L+  F+MKDLG A  ILG++I R+ E  I+ 
Sbjct: 1013 GSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGMEITRNREQGILD 1072

Query: 206  LSQSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQ-------LEYSKAIRCLM 258
            LSQS Y+  VL+ F     K   TP   + KL+      +A+       + Y  AI  +M
Sbjct: 1073 LSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLARDAEYMKLVPYPNAIGSIM 1132

Query: 259  YAMTCTRPDIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGY 317
            Y+M  +RPD+AY VG +SR+   PSK+HW  V  V++Y+ GT +  L +       + GY
Sbjct: 1133 YSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRFKKDDKFEIRGY 1192

Query: 318  TYASWVTCVKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LR 377
              + + T +    S +G +F  GG  +SW S  Q  +A ST  AE++ALA   KE + LR
Sbjct: 1193 CDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLR 1252

Query: 378  NLLYEILIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIV 437
             L  E+         V + CDSQ  ++ + + V++ +++HI +R+  +++ I +G I +V
Sbjct: 1253 GLAAEMGF---EQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVV 1309

Query: 438  FVRT 441
             + T
Sbjct: 1310 KIST 1313


>At3g29782 hypothetical protein
          Length = 1130

 Score =  172 bits (436), Expect = 4e-43
 Identities = 99/255 (38%), Positives = 140/255 (54%), Gaps = 27/255 (10%)

Query: 158  DDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSHYIEKVLK 217
            +DMLI G++ + + ++K+ L   F+MK++G ADVILGIKIIR  E I LSQ+HY EK+L 
Sbjct: 873  NDMLILGSNTDIINQSKNMLKRYFEMKNMGLADVILGIKIIRTDEGIILSQTHYDEKILD 932

Query: 218  KFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPDIAYVVGRLSR 277
            +F H+   +   P D    L  +   PV Q++Y++ +  LMY    TRPD+ + V  LSR
Sbjct: 933  RFKHYSNGTAKNPVDPQLHLTKNSGEPVQQVKYARVVGSLMYLTNSTRPDLVHSVNVLSR 992

Query: 278  YTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSVLEGYTYASWVTCVKDHASTSG*IF 337
            YT N   +H   + RV+ Y+  T ++ L Y   P+VLE                      
Sbjct: 993  YTSNQGYNHCKAITRVMNYVCYTKDHGLHYGKEPAVLE---------------------- 1030

Query: 338  NLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWPKLMRQVSIHC 397
                 AVSW S KQT  A STM +EFIAL   + E   LRN L +I +W   +  + +HC
Sbjct: 1031 -----AVSWKSSKQTVAAKSTMESEFIALDTTAAEAEWLRNFLEDIPMWGIPVPAIRVHC 1085

Query: 398  DSQCTLSKAYSQVYN 412
            DSQ  + +A S +YN
Sbjct: 1086 DSQSVIGRAQSTLYN 1100


>At1g58140 hypothetical protein
          Length = 1320

 Score =  169 bits (429), Expect = 2e-42
 Identities = 94/292 (32%), Positives = 162/292 (55%), Gaps = 3/292 (1%)

Query: 151  VMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSH 210
            ++ CLYVDD++  G + +  E+ K  ++  F+M D+G     LGI++ ++   I ++Q  
Sbjct: 994  LIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEG 1053

Query: 211  YIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPDIAY 270
            Y ++VLKKF   D   V TP +   KL   +          K++   +  +TCTRPDI Y
Sbjct: 1054 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1113

Query: 271  VVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGYTYASWVTCVKDH 329
             VG +SRY  +P+  H+    R+L+Y+ GT+N+ L Y+      L GY+ + W   V D 
Sbjct: 1114 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR 1173

Query: 330  ASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWPKL 389
             STSG +F +G  A +W SKKQ  +  ST  AE++A  +C    + LRNLL E+ +  + 
Sbjct: 1174 KSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE- 1232

Query: 390  MRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
                 I  D++  ++ A + V++ +S+HI  R+ ++++ ++   + + +V+T
Sbjct: 1233 -EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKT 1283


>At1g48710 hypothetical protein
          Length = 1352

 Score =  169 bits (429), Expect = 2e-42
 Identities = 94/292 (32%), Positives = 162/292 (55%), Gaps = 3/292 (1%)

Query: 151  VMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSH 210
            ++ CLYVDD++  G + +  E+ K  ++  F+M D+G     LGI++ ++   I ++Q  
Sbjct: 1026 LIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEG 1085

Query: 211  YIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPDIAY 270
            Y ++VLKKF   D   V TP +   KL   +          K++   +  +TCTRPDI Y
Sbjct: 1086 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1145

Query: 271  VVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGYTYASWVTCVKDH 329
             VG +SRY  +P+  H+    R+L+Y+ GT+N+ L Y+      L GY+ + W   V D 
Sbjct: 1146 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR 1205

Query: 330  ASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWPKL 389
             STSG +F +G  A +W SKKQ  +  ST  AE++A  +C    + LRNLL E+ +  + 
Sbjct: 1206 KSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE- 1264

Query: 390  MRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
                 I  D++  ++ A + V++ +S+HI  R+ ++++ ++   + + +V+T
Sbjct: 1265 -EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKT 1315


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  169 bits (427), Expect = 4e-42
 Identities = 94/292 (32%), Positives = 162/292 (55%), Gaps = 3/292 (1%)

Query: 151  VMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSH 210
            ++ CLYVDD++  G + +  E+ K  ++  F+M D+G     LGI++ ++   I ++Q  
Sbjct: 1026 LIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIFITQEG 1085

Query: 211  YIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPDIAY 270
            Y ++VLKKF   D   V TP +   KL   +          K++   +  +TCTRPDI Y
Sbjct: 1086 YAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1145

Query: 271  VVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGYTYASWVTCVKDH 329
             VG +SRY  +P+  H+    R+L+Y+ GT+N+ L Y+      L GY+ + W   V D 
Sbjct: 1146 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR 1205

Query: 330  ASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWPKL 389
             STSG +F +G  A +W SKKQ  +  ST  AE++A  +C    + LRNLL E+ +  + 
Sbjct: 1206 KSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQE- 1264

Query: 390  MRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
                 I  D++  ++ A + V++ +S+HI  R+ ++++ ++   + + +V+T
Sbjct: 1265 -EPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKT 1315


>At2g19840 copia-like retroelement pol polyprotein
          Length = 1137

 Score =  164 bits (414), Expect = 1e-40
 Identities = 102/307 (33%), Positives = 167/307 (54%), Gaps = 29/307 (9%)

Query: 145  IPSGKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEI- 203
            + SG+ +   LYVDD+LI   D   V   K+ L++ F+MKDLG+A  ILG++I+RD +  
Sbjct: 821  LQSGEYIYLLLYVDDILIASRDKRTVCDLKALLNSEFEMKDLGDAKKILGMEIVRDRKAG 880

Query: 204  -IGLSQSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQ-------LEYSKAIR 255
             + +SQ  Y+ KVL  F     K V TP   + KL+P     V +       + Y  A+ 
Sbjct: 881  TMSISQEGYLLKVLGNFGMDQAKPVFTPMGAHFKLKPATDEEVMRQSEVMRAVPYQSAVG 940

Query: 256  CLMYAMTCTRPDIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIY-NGYPSVL 314
             LMY+M  TRPD+A+ VG + R+   P K+HW  V  +L+Y+ G+I+  L Y N    +L
Sbjct: 941  SLMYSMIGTRPDLAHSVGLVCRFMSKPLKEHWQAVKWILRYIRGSIDRKLCYKNEGELIL 1000

Query: 315  EGYTYASWVTCVKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV 374
            EGY  + +    +   STSG                   +A S+  AE++AL   +KE +
Sbjct: 1001 EGYCDSDYAADKEGRRSTSG----------------VKVVALSSTEAEYMALTDGAKEAI 1044

Query: 375  *LRNLLYEILIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVI 434
             L+  + E+     + + V+IHCDSQ  ++ A + VY+ +++HI +++  ++DL+ NG +
Sbjct: 1045 WLKGHVSELGF---VQKTVNIHCDSQSAIALAKNAVYHERTKHIDVKYHFIRDLVNNGEV 1101

Query: 435  SIVFVRT 441
             ++ + T
Sbjct: 1102 QVLKIDT 1108


>At2g21310 putative retroelement pol polyprotein
          Length = 838

 Score =  162 bits (410), Expect = 4e-40
 Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 29/304 (9%)

Query: 156 YVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGE--IIGLSQSHYIE 213
           ++DD+     +   V++ K  LS+ F+MKDLG A  ILG++I R+ E  I+ LSQ  Y++
Sbjct: 519 FIDDLT--RKNKETVKELKERLSSEFEMKDLGPARKILGMEITRNREENILELSQRSYLQ 576

Query: 214 KVLKKFDHFDCKSVSTPFDQNTKL-------QPHKRCPVAQLEYSKAIRCLMYAMTCTRP 266
           KVLK F   +CK V TP   + K           +   +  + Y+ A+  +MY+M  +RP
Sbjct: 577 KVLKTFRMDECKPVKTPLAPHMKFVAATETEAEEQADQMKSIPYANAVGSIMYSMIGSRP 636

Query: 267 DIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPS-VLEGYTYASWVTC 325
           D+A+ VG +SR+   P  +HW  V  VL+Y+ G+I+  L Y      V+ GY       C
Sbjct: 637 DLAHPVGVISRFMSKPLMNHWLGVKWVLRYIKGSIDSRLQYKREGDFVVTGY-------C 689

Query: 326 VKDHA-------STSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRN 378
             DH+       ST+G  F +GG  VSW S  Q  +A S+  AE+IAL   +KE   L++
Sbjct: 690 DSDHSGDRDRSRSTTGYTFTVGGNIVSWRSCLQPVVALSSTEAEYIALTEAAKEAYWLKD 749

Query: 379 LLYEILIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVF 438
           L+ E+         V IHCDSQ  ++ A + V++ +++HI  R  +++D IT+G + ++ 
Sbjct: 750 LMNELGF---KQGAVDIHCDSQSAIALAKNAVHHERTKHIQRRFHYIRDAITDGEVKVLK 806

Query: 439 VRTV 442
           + TV
Sbjct: 807 ISTV 810


>At3g60170 putative protein
          Length = 1339

 Score =  160 bits (404), Expect = 2e-39
 Identities = 96/298 (32%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 148  GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
            G  ++  LYVDD++  G+D    ++ K  +   F+M DLG+    LGI++ +    I + 
Sbjct: 1012 GNILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFIC 1071

Query: 208  QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCP-VAQLEYSKAIRCLMYAMTCTRP 266
            Q  Y  +VL +F   +  +V  P    TKL   +    V +  + + +  LMY +T TRP
Sbjct: 1072 QRRYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMY-LTVTRP 1130

Query: 267  DIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPS---VLEGYTYASWV 323
            D+ Y V  +SR+  NP   HW    R+L+YL GT+   + Y    +    L  +T + + 
Sbjct: 1131 DLMYGVCLISRFMSNPRMSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYA 1190

Query: 324  TCVKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEI 383
              + D  STSG +F +  GA+ W SKKQ  +A ST  AE+IA A C+ + V LR +L ++
Sbjct: 1191 GDLNDRRSTSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKL 1250

Query: 384  LIWPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
                K      I+CD+  T+  +   V +GKS+HI +R  +++DL+   V+ + +  T
Sbjct: 1251 GAEEK--SATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPT 1306


>At3g25450 hypothetical protein
          Length = 1343

 Score =  158 bits (399), Expect = 7e-39
 Identities = 94/298 (31%), Positives = 169/298 (56%), Gaps = 9/298 (3%)

Query: 151  VMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSH 210
            ++  +YVDD+L+ G++L+ +   K  +   F+M DLG+    LGI++++  + I L Q  
Sbjct: 1008 LVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQER 1067

Query: 211  YIEKVLKKFDHFDCKSVSTPFDQN---TKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
            Y +K+L++     C +V+TP   +   +K Q  KR  + + +Y + I CL Y +  TRPD
Sbjct: 1068 YAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKR--IDETDYRRNIGCLRYLLH-TRPD 1124

Query: 268  IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIY-NGYPSVLEGYTYASWVTCV 326
            ++Y VG LSRY   P + H   + ++L+YL GT ++ L +  G  + L GY+ +S    +
Sbjct: 1125 LSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDL 1184

Query: 327  KDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIW 386
             D  ST G IF L    ++W S+KQ  +  S+  AEF+A    +K+ + L+ LL E++  
Sbjct: 1185 DDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVI-- 1242

Query: 387  PKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRTVKE 444
                 +V+I  D++  ++   + V++G+S+HI  R+  +++ + NG I +  V  V++
Sbjct: 1243 GTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVPGVRQ 1300


>At2g05390 putative retroelement pol polyprotein
          Length = 1307

 Score =  153 bits (386), Expect = 2e-37
 Identities = 91/299 (30%), Positives = 167/299 (55%), Gaps = 7/299 (2%)

Query: 149  KAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQ 208
            K ++  +YVDD+L+ G+ L+ +   K  ++  F+M DLG+    LGI+++     I L Q
Sbjct: 967  KLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNGIILRQ 1026

Query: 209  SHYIEKVLKKFDHFDCKSVSTPFDQNTKL--QPHKRCPVAQLEYSKAIRCLMYAMTCTRP 266
              Y  K++++    +C  V  P     +L     ++C + + +Y + I CL Y +  TRP
Sbjct: 1027 ERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKC-ITERDYRRMIGCLRY-IVHTRP 1084

Query: 267  DIAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSL-IYNGYPSVLEGYTYASWVTC 325
            D++Y VG LSRY   P + H + + +VL+YL GT+++ L +  G+ S L GY+ +S    
Sbjct: 1085 DLSYCVGVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDSSHSAD 1144

Query: 326  VKDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILI 385
            + D  ST+G IF L    ++W S+KQ  +A S+  AEF+A    +K+ + L++L  E+  
Sbjct: 1145 LDDGKSTAGHIFYLHQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVC- 1203

Query: 386  WPKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRTVKE 444
                  +V I  D++  ++   + V++G+S+HI  R+  +++ + N ++ +  V  V++
Sbjct: 1204 -GTTSEKVMIRVDNKSAIALTKNLVFHGRSKHIHRRYHFIRECVENNLVEVDHVPGVEQ 1261


>At2g15650 putative retroelement pol polyprotein
          Length = 1347

 Score =  150 bits (379), Expect = 1e-36
 Identities = 91/308 (29%), Positives = 163/308 (52%), Gaps = 14/308 (4%)

Query: 151  VMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSH 210
            ++  LYVDD++I G + + +   K  + + F+M DLG  +  LG+++ +D   I LSQ  
Sbjct: 1025 LIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQEK 1084

Query: 211  YIEKVLKKFDHFDCKSVSTPFDQNTK---LQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
            Y  K++ KF   + KSVSTP     K   ++   +      +Y + +  L+Y +  +RPD
Sbjct: 1085 YANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLY-LCASRPD 1143

Query: 268  IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGYTYASWVTCV 326
            + Y    LSRY  +PS  H+    RVL+Y+ GT N+ +++    +  L GY+ + W   +
Sbjct: 1144 VMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGSL 1203

Query: 327  KDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIW 386
            +D  ST+G +F LG     W S KQ  +A ST  AE+IA+ A + + + L+ L  +  + 
Sbjct: 1204 EDKKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGL- 1262

Query: 387  PKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRTVKESC 446
             K    + I CD++  ++   + V + +++HI +++  V++    G+I +       E C
Sbjct: 1263 -KFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQL-------EYC 1314

Query: 447  RSFDERSD 454
            +  D+ +D
Sbjct: 1315 KGEDQLAD 1322


>At1g26990 polyprotein, putative
          Length = 1436

 Score =  150 bits (379), Expect = 1e-36
 Identities = 91/295 (30%), Positives = 151/295 (50%), Gaps = 3/295 (1%)

Query: 148  GKAVMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLS 207
            G  ++  +YVDD+LI  T      +  S LS+ F ++DLGE    LGI+I R+ + I L 
Sbjct: 1110 GFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLC 1169

Query: 208  QSHYIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLEYSKAIRCLMYAMTCTRPD 267
            Q  Y+  +L   D  DCK  S P + N KL       +   +  + I   +  +  TRPD
Sbjct: 1170 QRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPD 1229

Query: 268  IAYVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGYTYASWVTCV 326
            I + V +L++Y+  P+  H   ++++L+YL GTI   L Y    +  L G++ + W TC 
Sbjct: 1230 INFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCP 1289

Query: 327  KDHASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIW 386
                  +G    +G   VSW SKKQ  ++ S+  AE+ A++  +KE + L  +L    I 
Sbjct: 1290 DTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKI- 1348

Query: 387  PKLMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
                    ++CD++  L  A + V++ +++HI      V++ I  G++  +FVRT
Sbjct: 1349 -PFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECIEAGILKTIFVRT 1402


>At4g16870 retrotransposon like protein
          Length = 1474

 Score =  149 bits (375), Expect = 4e-36
 Identities = 93/293 (31%), Positives = 153/293 (51%), Gaps = 5/293 (1%)

Query: 151  VMTCLYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSH 210
            V   +YVDD+++ G+D + ++   + L+  F +KD  +    LGI+  R  + + L Q  
Sbjct: 1153 VYVLVYVDDIIVTGSDKSSIDAVLTSLAERFSIKDPTDLHYFLGIEATRTKQGLHLMQRK 1212

Query: 211  YIEKVLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQL-EYSKAIRCLMYAMTCTRPDIA 269
            YI+ +L K +  D K V TP   + KL  H    +    EY   +  L Y +  TRPDIA
Sbjct: 1213 YIKDLLAKHNMADAKPVLTPLPTSPKLTLHGGTKLNDASEYRSVVGSLQY-LAFTRPDIA 1271

Query: 270  YVVGRLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYN-GYPSVLEGYTYASWVTCVKD 328
            Y V RLS+    P++DHW    RVL+YL GT  + +  +   P  L  ++ A W     D
Sbjct: 1272 YAVNRLSQLMPQPTEDHWQAAKRVLRYLAGTSTHGIFLDTTSPLNLHAFSDADWAGDSDD 1331

Query: 329  HASTSG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWPK 388
            + ST+  +  LG   +SW SKKQ  +A S+  +E+ A+A  + E   L +LL ++ I  +
Sbjct: 1332 YVSTNAYVIYLGKNPISWSSKKQRGVARSSTESEYRAVANAASEVKWLCSLLSKLHI--R 1389

Query: 389  LMRQVSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRT 441
            L  + SI CD+        + V++ + +HI + +  V+++I +G + +  V T
Sbjct: 1390 LPIRPSIFCDNIGATYLCANPVFHSRMKHIAIDYHFVRNMIQSGALRVSHVST 1442


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  149 bits (375), Expect = 4e-36
 Identities = 94/292 (32%), Positives = 157/292 (53%), Gaps = 5/292 (1%)

Query: 155  LYVDDMLIFGTDLNEVEKTKSFLSNSFDMKDLGEADVILGIKIIRDGEIIGLSQSHYIEK 214
            +YVDD+LI G D   ++K K +LS  F MKDLG+    LGI++ R  E I LSQ  Y   
Sbjct: 1183 IYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSRGPEGIFLSQRKYALD 1242

Query: 215  VLKKFDHFDCKSVSTPFDQNTKLQPHKRCPVAQLE-YSKAIRCLMYAMTCTRPDIAYVVG 273
            V+    +   +   TP +QN  L       ++  + Y + +  L+Y +  TRP+++Y V 
Sbjct: 1243 VIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLH-TRPELSYSVH 1301

Query: 274  RLSRYTCNPSKDHWHVVNRVLKYLNGTINYSLIYNGYPSV-LEGYTYASWVTCVKDHAST 332
             L+++  NP + H+    RV++YL G+    ++ N  P + LE Y  + W +C     S 
Sbjct: 1302 VLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYCDSDWQSCPLTRRSI 1361

Query: 333  SG*IFNLGGGAVSWGSKKQTCIADSTMAAEFIALAACSKETV*LRNLLYEILIWPKLMRQ 392
            S  +  LGG  +SW +KKQ  ++ S+  AE+ A++   KE   LR LL E+ I  +    
Sbjct: 1362 SAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRKLLKELGI--EQSTP 1419

Query: 393  VSIHCDSQCTLSKAYSQVYNGKSRHIVLRHSHVKDLITNGVISIVFVRTVKE 444
              ++CDS+  +  A + V++ +++HI      V+D + +G+I+   VRT ++
Sbjct: 1420 ARLYCDSKAAIHIAANPVFHERTKHIESDCHSVRDAVRDGIITTQHVRTTEQ 1471


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.351    0.154    0.546 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,550,105
Number of Sequences: 26719
Number of extensions: 368115
Number of successful extensions: 1803
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 121
length of query: 469
length of database: 11,318,596
effective HSP length: 103
effective length of query: 366
effective length of database: 8,566,539
effective search space: 3135353274
effective search space used: 3135353274
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 62 (28.5 bits)