BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0181.4
(987 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20875 unknown protein 41 0.003
At5g14810 putative protein 39 0.014
At4g32210 putative protein 39 0.014
At3g43620 putative protein 39 0.019
At2g14640 putative retroelement pol polyprotein 35 0.16
At1g47560 hypothetical protein 35 0.21
At1g67020 hypothetical protein 33 0.61
At1g21310 extensin 3 (atExt3)(AtExt5) 33 0.61
At4g13340 extensin-like protein 33 0.79
At3g54580 extensin precursor -like protein 33 1.0
At2g05030 hypothetical protein 33 1.0
At1g35370 hypothetical protein 32 1.4
At4g08370 extensin-like protein 32 2.3
At2g18510 putative spliceosome associated protein 32 2.3
At1g76930 extensin 32 2.3
At1g76360 protein kinase like protein 32 2.3
At5g15580 putative protein 31 3.0
At4g33970 extensin-like protein 31 3.0
At3g21215 unknown protein 31 3.0
At5g62190 putative RNA helicase (MMI9.2) 30 5.1
>At5g20875 unknown protein
Length = 272
Score = 41.2 bits (95), Expect = 0.003
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 59 IPPQPPPIYHHNPAPYHN----YPSQ-TQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFL 113
+P PPP + A N +P + +++ L P +++ F G + WL E +F
Sbjct: 77 LPVAPPPPTKQSTAAEDNSIDTHPHRMSRYIQLMKPKIEMPVFEGPNVNSWLTRAERYFE 136
Query: 114 QHPWPLELRFQFIALYLEGQALTWFNLW-RHQLDSWEKFR 152
+ + Q + + +EG+AL WFNL R+ W F+
Sbjct: 137 FGSFTDAEKIQLVYMSVEGRALCWFNLENRNPFVDWNDFK 176
>At5g14810 putative protein
Length = 716
Score = 38.9 bits (89), Expect = 0.014
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 91 LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
L+ ++F+G T WL E FFL P EL+ F +L+ + A T W+H
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165
Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
W ++ + ++++ + ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189
>At4g32210 putative protein
Length = 1086
Score = 38.9 bits (89), Expect = 0.014
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 91 LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
L+ ++F+G T WL E FFL P EL+ F +L+ + A T W+H
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165
Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
W ++ + ++++ + ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189
>At3g43620 putative protein
Length = 221
Score = 38.5 bits (88), Expect = 0.019
Identities = 26/109 (23%), Positives = 48/109 (43%), Gaps = 15/109 (13%)
Query: 95 KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQLDSW 148
+F+G WL E FFL P EL+ +++ + TW +WRH W
Sbjct: 73 RFNGDGIKDWLFQIEQFFLIDHTPEELKVDIASIHFDDIDATWHQSIVQSIMWRHVRHDW 132
Query: 149 EKFREVFKLQFIQFRSEHIAASSGTVLEKTTVVVPPRKGGTVYHDELET 197
++ + ++++ + + IA +L++T +G VYH E+
Sbjct: 133 WNYKLLLQVRYNKHVDDSIAKLK--LLQET-------EGIEVYHARFES 172
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 35.4 bits (80), Expect = 0.16
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 83 HSALSSPP-LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWF 138
++A++ P L +F G D T WL + +F H P+E +F +L+G A W+
Sbjct: 97 NNAIARPSKLDFPRFHGGDLTKWLSKAKQYFEYHEGPVEQAVRFTTFHLDGVANGWW 153
>At1g47560 hypothetical protein
Length = 1564
Score = 35.0 bits (79), Expect = 0.21
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 19/166 (11%)
Query: 17 LDAIDAKLASMATKLQVDFDTRISAISGLIDQVSFLN--GHLR------SIPPQPPPIYH 68
++ ++ K+A KL F I I + +V+ + GHL+ ++ P +
Sbjct: 891 MEKLENKIAEQNQKLDKSFAQLIDTIRLISVKVNNASSSGHLQQQRSRETVYPSSEVFHV 950
Query: 69 HNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIAL 128
NY + T+ S L +FSG WL E FF P EL+ +
Sbjct: 951 RRTGTNSNYSAVTRSSKLD-----FHRFSGDRVRDWLFKLEQFFSLDFTPEELKVSIAST 1005
Query: 129 YLEGQALTWF-NLWRHQ-----LDSWEKFREVFKLQFIQFRSEHIA 168
+G A W+ +L+ L +W ++ + + F + + I+
Sbjct: 1006 LCDGAAAKWYKSLFESDFGVKLLSNWNMYKLLLEEHFAEVLDDPIS 1051
>At1g67020 hypothetical protein
Length = 659
Score = 33.5 bits (75), Expect = 0.61
Identities = 36/128 (28%), Positives = 50/128 (38%), Gaps = 18/128 (14%)
Query: 68 HHNPAPYHNYPSQT-QHSALSSPPL-----KLIK------FSGSDPTFWLLNTEVFFLQH 115
H +P H++ S Q A SP L LI+ F GS W E FF
Sbjct: 75 HSCQSPRHSFSSSMPQRGAGESPILLDNRSSLIRRIEMPVFDGSGVYEWFSKVERFFRVG 134
Query: 116 PWPLELRFQFIALYLEGQALTWF--NLWRHQLDSWEKFREVFKLQFIQFRSEHIAASSGT 173
+ + +AL LEG AL WF + + W F + +F + SS
Sbjct: 135 RYQDSDKLDLVALSLEGVALKWFLREMSTLEFRDWNSFEQRLLARFDPVKIH----SSPE 190
Query: 174 VLEKTTVV 181
VL TT++
Sbjct: 191 VLMPTTLI 198
>At1g21310 extensin 3 (atExt3)(AtExt5)
Length = 349
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 98 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 126
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 238 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 266
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 266 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 294
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 182 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 210
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 126 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 154
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 210 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 238
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 294 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 322
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 154 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 182
Score = 33.5 bits (75), Expect = 0.61
Identities = 13/29 (44%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 63 PPPIYHHNPAP-YHNYPSQTQHSALSSPP 90
PPP+ H++P P YH+ P +H SPP
Sbjct: 70 PPPVKHYSPPPVYHSPPPPKKHYVYKSPP 98
Score = 32.7 bits (73), Expect = 1.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 58 SIPPQP-----PPIYHHNPAP-YHNYPSQTQHSALSSPP 90
S PP P PP+ H++P P YH+ P +H SPP
Sbjct: 32 SSPPPPVKHYTPPVKHYSPPPVYHSPPPPKKHYEYKSPP 70
>At4g13340 extensin-like protein
Length = 760
Score = 33.1 bits (74), Expect = 0.79
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Query: 58 SIPPQPPPIYHHNPAP----YHNYPSQTQHSALSSPP 90
S PP PPP+++ +P P YH+ P H + PP
Sbjct: 659 SSPPPPPPVHYSSPPPPEVHYHSPPPSPVHYSSPPPP 695
Score = 30.0 bits (66), Expect = 6.7
Identities = 13/42 (30%), Positives = 18/42 (41%)
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDP 101
PP P P Y+ +P P H+ P SPP + + P
Sbjct: 552 PPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPPPIYPYLSPPP 593
>At3g54580 extensin precursor -like protein
Length = 951
Score = 32.7 bits (73), Expect = 1.0
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 4/58 (6%)
Query: 61 PQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWP 118
P PP +Y P PYH+ + Q+ SPP + +S P ++ + +V++ P P
Sbjct: 587 PPPPYVYSSPPPPYHSPSPKVQY---KSPPPPYV-YSSPPPPYYSPSPKVYYKSPPPP 640
>At2g05030 hypothetical protein
Length = 205
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Query: 77 YPSQTQH--SALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQA 134
Y Q QH + + L +F G+ WL E FF P +L+ + +A++ + A
Sbjct: 118 YEPQQQHYGNLTRLGKIDLPRFDGTGIKEWLFKVEEFFGIDFTPADLKVKMVAIHFDSHA 177
Query: 135 LTW 137
TW
Sbjct: 178 ATW 180
>At1g35370 hypothetical protein
Length = 1447
Score = 32.3 bits (72), Expect = 1.4
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 95 KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTW 137
+F GS WL E FF P E++ + +A++ + A TW
Sbjct: 121 RFDGSRINEWLFKVEEFFGVDFTPEEMKVKMVAIHFDSHAATW 163
>At4g08370 extensin-like protein
Length = 350
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Query: 55 HLRSIPPQPPPIYHHNPAP---YHNYPSQTQHSALSSPPLKLIKFSGSDPTF 103
+L S PP PP +Y+ P P +N P + + S PP + S PT+
Sbjct: 60 YLYSSPPPPPYVYNSPPPPPPYIYNSPPRPPYVYKSPPPPPFVYSSPPPPTY 111
>At2g18510 putative spliceosome associated protein
Length = 363
Score = 31.6 bits (70), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 57 RSIPPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDP 101
R PP PP +Y P ++PSQ Q ++ PP++ G P
Sbjct: 255 RQPPPPPPQVYQTQPP---SWPSQPQQHSMVPPPMQFRPPQGMPP 296
>At1g76930 extensin
Length = 373
Score = 31.6 bits (70), Expect = 2.3
Identities = 15/38 (39%), Positives = 18/38 (46%), Gaps = 4/38 (10%)
Query: 57 RSIPP----QPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
+S PP PP +YH P P H+Y Q SPP
Sbjct: 332 KSPPPPVHYSPPTVYHSPPPPVHHYSPPHQPYLYKSPP 369
Score = 30.0 bits (66), Expect = 6.7
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 63 PPPIYHHNPAP----------YHNYPSQTQHSALSSPP 90
PPP+ +H+P P YH+ P +H SPP
Sbjct: 298 PPPVVYHSPPPPVHYSPPPVVYHSPPPPKKHYEYKSPP 335
>At1g76360 protein kinase like protein
Length = 488
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 927 IHELELDKSCFVRFRPEFNSRTLYSFLGFCSHSTTLLEWILIIAWIVYLSSLRTRMFSRG 986
+HE + +C VRF +F+ L LG+C +++L+ ++ SL +FS+G
Sbjct: 211 LHEWQASDNCEVRFLGKFHHPNLVKLLGYCWEEN---QFLLVYEYLP-KGSLENHLFSKG 266
>At5g15580 putative protein
Length = 927
Score = 31.2 bits (69), Expect = 3.0
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 4/59 (6%)
Query: 805 RSKDNVSTPNVGEDEKEVETENGKSTADLKVSHGLFPNSKASSTKLYFLIMDCFSDGST 863
++ DNV N+ D+KE E K TA K G+ S SS++L F C S S+
Sbjct: 52 KASDNVGDTNISADKKETEKSKKKKTAKEK-QRGV---SSESSSRLSFSSSPCSSSFSS 106
>At4g33970 extensin-like protein
Length = 699
Score = 31.2 bits (69), Expect = 3.0
Identities = 13/31 (41%), Positives = 15/31 (47%)
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
PP PPP H P P H+ P +S PP
Sbjct: 533 PPPPPPPVHSPPPPVHSPPPPPVYSPPPPPP 563
Score = 30.8 bits (68), Expect = 3.9
Identities = 13/31 (41%), Positives = 16/31 (50%)
Query: 60 PPQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
PP PPP+Y P + PSQ+ S PP
Sbjct: 612 PPPPPPVYSPPPPVFSPPPSQSPPVVYSPPP 642
>At3g21215 unknown protein
Length = 339
Score = 31.2 bits (69), Expect = 3.0
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 5/24 (20%)
Query: 60 PPQPPPIYHHNPAP-----YHNYP 78
PP PPPI+HH P P HN P
Sbjct: 30 PPHPPPIHHHPPPPPVLVDNHNRP 53
>At5g62190 putative RNA helicase (MMI9.2)
Length = 671
Score = 30.4 bits (67), Expect = 5.1
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 784 LSLFLARLEDKTYFQRGSIGRRSKD---NVSTPNVGEDEKEVE-TENGKSTADLKVSHGL 839
+ L L ++ED T Q N+S + D+K ++ N K A V H
Sbjct: 269 VELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIA 328
Query: 840 FPNSKASSTKLYFLIMDCFSDG 861
P +KA+ +L I+ C+S G
Sbjct: 329 IPCNKAAMARLIPDIISCYSSG 350
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,172,847
Number of Sequences: 26719
Number of extensions: 1036010
Number of successful extensions: 4258
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3856
Number of HSP's gapped (non-prelim): 247
length of query: 987
length of database: 11,318,596
effective HSP length: 109
effective length of query: 878
effective length of database: 8,406,225
effective search space: 7380665550
effective search space used: 7380665550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0181.4