BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0180b.2
         (57 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g39500 unknown protein                                              82  7e-17
At4g28140 putative DNA-binding protein                                 26  3.3
At3g45710 putative transporter protein                                 25  5.6
At3g23470 cyclopropane-fatty-acyl-phospholipid synthase, putative      25  7.3
At1g64110 unknown protein                                              25  7.3
At5g25010 putative protein                                             25  9.6
At3g23510 cyclopropane-fatty-acyl-phospholipid synthase, putative      25  9.6

>At2g39500 unknown protein
          Length = 55

 Score = 81.6 bits (200), Expect = 7e-17
 Identities = 32/48 (66%), Positives = 42/48 (86%)

Query: 2  ELKNVVKDKKFWVASFLIAWAAALQGHMMWLQRQDSFKHKFRNLDDDD 49
          ++K +VKDK+FW+ASF+I WAA LQGHMMWLQ+Q+SFK KF  +D+DD
Sbjct: 6  DVKTIVKDKRFWIASFIIVWAAGLQGHMMWLQKQESFKQKFGTIDEDD 53


>At4g28140 putative DNA-binding protein
          Length = 292

 Score = 26.2 bits (56), Expect = 3.3
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 2   ELKNVVKDKKFWVASFLIAWAAA---------LQGHMMWLQRQDSFKHKFRNLDDDDRSD 52
           E++      + W+ +F  A  AA         L+GH   L   + F +K   L D + SD
Sbjct: 157 EIRKPRSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPEHFVNKESELHDSNSSD 216

Query: 53  EPQP 56
           + +P
Sbjct: 217 QKEP 220


>At3g45710 putative transporter protein
          Length = 556

 Score = 25.4 bits (54), Expect = 5.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 37  SFKHKFRNLDDDDRSDEPQ 55
           S+ +K+RNL DDD   +P+
Sbjct: 534 SWFYKYRNLKDDDHEQDPK 552


>At3g23470 cyclopropane-fatty-acyl-phospholipid synthase, putative
          Length = 283

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 5  NVVKDKKFWVASFLIAWAAALQGHMMWLQRQDSFKHKFRNLDDD-DRSDE 53
          N+VK + +W   FL A  A+++ ++  + +Q++     +N+    D S+E
Sbjct: 40 NLVKKRGWWTPVFLTAGLASVKYYLKHVLKQNTLTQARKNISSHYDLSNE 89


>At1g64110 unknown protein
          Length = 824

 Score = 25.0 bits (53), Expect = 7.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 18  LIAWAAALQGHMMWLQRQDSFKHKFRNLDDDD 49
           L++W + L+  M  +Q QD+  H    L ++D
Sbjct: 338 LVSWKSQLERDMNMIQTQDNRNHIMEVLSEND 369


>At5g25010 putative protein
          Length = 286

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 36  DSFKHKFRNLDDDDRSDE 53
           DS  HKF N+DDD   +E
Sbjct: 146 DSILHKFINIDDDSFRNE 163


>At3g23510 cyclopropane-fatty-acyl-phospholipid synthase, putative
          Length = 456

 Score = 24.6 bits (52), Expect = 9.6
 Identities = 11/41 (26%), Positives = 21/41 (50%)

Query: 5   NVVKDKKFWVASFLIAWAAALQGHMMWLQRQDSFKHKFRNL 45
           N+ K + +W   FL A  A+ +  +  + RQ++     RN+
Sbjct: 125 NLTKKRGWWTPMFLTAGLASAKYFLKHVSRQNTLTQARRNI 165


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.133    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,470,886
Number of Sequences: 26719
Number of extensions: 44776
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 7
length of query: 57
length of database: 11,318,596
effective HSP length: 33
effective length of query: 24
effective length of database: 10,436,869
effective search space: 250484856
effective search space used: 250484856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)