Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0180a.7
         (199 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g55390 unknown protein                                             256  7e-69
At5g40300 unknown protein                                              73  9e-14
At2g38480 unknown protein                                              57  8e-09
At1g17200 unknown protein                                              53  1e-07
At5g54980 unknown protein (At5g54980)                                  52  2e-07
At4g16442 unknown protein                                              51  5e-07
At2g39530 unknown protein                                              48  3e-06
At5g62820 unknown protein                                              48  4e-06
At3g16300 hypothetical protein                                         47  7e-06
At3g14380 unknown protein                                              43  1e-04
At4g25825 unknown protein                                              39  0.002
At2g35760 unknown protein                                              39  0.002
At5g06200 putative protein                                             37  0.005
At4g25040 unknown protein                                              34  0.058
At4g03540 hypothetical protein                                         33  0.100
At5g04970 pectinesterase                                               31  0.49
At3g10720 pectinesterase like protein                                  30  0.65
At1g03700 putative protein                                             28  2.5
At1g48840 unknown protein                                              28  3.2
At1g74750                                                              28  4.2

>At3g55390 unknown protein
          Length = 194

 Score =  256 bits (653), Expect = 7e-69
 Identities = 123/198 (62%), Positives = 149/198 (75%), Gaps = 6/198 (3%)

Query: 2   MRSPQPLRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVF 61
           MRSP   RNG      ++ H      FHST+   KLRRFNSLIL+ RL SFSFSLAS+VF
Sbjct: 1   MRSPHAFRNGESPTLRDHTH------FHSTVTAQKLRRFNSLILLLRLASFSFSLASAVF 54

Query: 62  MLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFD 121
           MLTN+ GS SPHWY +D FRFV  ANAIVA+YS+FEM   VWE SR  T++PE  QVWFD
Sbjct: 55  MLTNSRGSASPHWYDFDAFRFVFVANAIVALYSVFEMGTCVWEFSRETTLWPEAFQVWFD 114

Query: 122 FGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGFTSL 181
           FGHDQVF+YLLL+A +A  A+ RT++  DTCTA+ AFC+QSD+A+ LG+A F+FL F+S 
Sbjct: 115 FGHDQVFSYLLLSAGSAAAALARTMRGGDTCTANKAFCLQSDVAIGLGFAAFLFLAFSSC 174

Query: 182 LTGFRVVCFIINGSRFHL 199
            +GFRV CF+I GSRFHL
Sbjct: 175 FSGFRVACFLITGSRFHL 192


>At5g40300 unknown protein
          Length = 270

 Score = 73.2 bits (178), Expect = 9e-14
 Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 8/187 (4%)

Query: 4   SPQPLRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLI----LVFRLISFSFSLAS- 58
           +P  + NG +    + + R   P F S+ +  +  ++ SLI    L FR+I+F   L S 
Sbjct: 79  TPFRVTNGEEEKKVSESRRQLRPSFSSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSF 138

Query: 59  SVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQV 118
           SV +     G     +Y+Y  FRF LAAN I  VYS F +   V+ +S         L+ 
Sbjct: 139 SVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRH 198

Query: 119 WFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGF 178
           + +FG DQ+ AYLL  ASA+ +A +R + +  +   ++ F   +  +VAL Y  FV   F
Sbjct: 199 FLEFGLDQMLAYLL--ASASTSASIR-VDDWQSNWGADKFPDLARASVALSYVSFVAFAF 255

Query: 179 TSLLTGF 185
            SL +G+
Sbjct: 256 CSLASGY 262


>At2g38480 unknown protein
          Length = 188

 Score = 56.6 bits (135), Expect = 8e-09
 Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 9/142 (6%)

Query: 46  VFRLISFSFSLASSVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEI 105
           + R I   FSL + + M++N HG    ++  Y+ +R+VLA + I  +Y+ ++  A   + 
Sbjct: 50  ITRGICLLFSLIAFLIMVSNKHGYGR-NFNDYEEYRYVLAISIISTLYTAWQTFAHFSK- 107

Query: 106 SRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIA 165
                +F     +  DF  DQ+ AYLL++A+++   +    +E       N F   +  A
Sbjct: 108 ---REIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQ----DNIFTDSAASA 160

Query: 166 VALGYAGFVFLGFTSLLTGFRV 187
           +++    F+ L  ++L +G+++
Sbjct: 161 ISMAIFAFIALALSALFSGYKL 182


>At1g17200 unknown protein
          Length = 204

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 46/151 (30%), Positives = 68/151 (44%), Gaps = 19/151 (12%)

Query: 46  VFRLISFSFSLASSVFML----TNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVAS 101
           + RL      +A+ V ML    TN  GS S  + +   FR+++ AN I A YSL    A+
Sbjct: 36  MLRLAPVGLCVAALVVMLKDSETNEFGSIS--YSNLTAFRYLVHANGICAGYSLLS--AA 91

Query: 102 VWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQ 161
           +  + R ++  P   +VW  F  DQ+  YL+LAA A    ++      D+    +  C  
Sbjct: 92  IAAMPRSSSTMP---RVWTFFCLDQLLTYLVLAAGAVSAEVLYLAYNGDSAITWSDAC-- 146

Query: 162 SDIAVALGYAGFVFLGFTSLLTGFRVVCFII 192
                   Y GF      S++  F VVCF I
Sbjct: 147 ------SSYGGFCHRATASVIITFFVVCFYI 171


>At5g54980 unknown protein (At5g54980)
          Length = 194

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 52/186 (27%), Positives = 84/186 (44%), Gaps = 26/186 (13%)

Query: 16  DNNNNH-----RSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVFMLTNTHGSD 70
           DNNNN+     RSSS +     A   L+  +S +   RL     S+A+    +TN   + 
Sbjct: 3   DNNNNNTREEERSSSSKQQQPQAPMSLKIIDSCL---RLSVVPLSVATIWLTVTNHESNP 59

Query: 71  SPHWYHYDTF---RFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQV 127
                 Y++    ++++  +AI A+Y+L   V+S W       V   V + W  F  DQV
Sbjct: 60  DYGNLEYNSIMGLKYMVGVSAISAIYALLSTVSS-W-------VTCLVSKAWLFFIPDQV 111

Query: 128 FAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQ-----SDIAVALGYAGFV--FLGFTS 180
            AY++  + A  T +V  L + D     +  C       S + +ALG   FV  F  F S
Sbjct: 112 LAYVMTTSVAGATEIVYLLNKGDKIVTWSEMCSSYPHYCSKLTIALGLHVFVLFFFLFLS 171

Query: 181 LLTGFR 186
           +++ +R
Sbjct: 172 VISAYR 177


>At4g16442 unknown protein
          Length = 182

 Score = 50.8 bits (120), Expect = 5e-07
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 14/161 (8%)

Query: 38  RRFNSLILVFRLISFSFSLASSVFMLTNTHGS------DSPHWYHYDTFRFVLAANAIVA 91
           RR     L+ R     F+L + + ++T+T          +  +       F++ AN I A
Sbjct: 6   RRMRLTELLLRCSISVFALLALILVVTDTEVKLIFTIKKTAKYTDMKAVVFLVVANGIAA 65

Query: 92  VYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETD- 150
           VYSL + V  V    +G  +F + L  W  F  DQ  AYL +AA AA        +E + 
Sbjct: 66  VYSLLQSVRCVVGTMKGKVLFSKPL-AWAFFSGDQAMAYLNVAAIAATAESGVIAREGEE 124

Query: 151 ------TCTASNAFCVQSDIAVALGYAGFVFLGFTSLLTGF 185
                  CT    FC Q  I V+      + + F S ++ F
Sbjct: 125 DLQWMRVCTMYGKFCNQMAIGVSSALLASIAMVFVSCISAF 165


>At2g39530 unknown protein
          Length = 178

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 35/114 (30%), Positives = 62/114 (53%), Gaps = 9/114 (7%)

Query: 42  SLILVFRLISFSFSLASSVFMLTNTH----GSDSPHWYHYDTF--RFVLAANAIVAVYSL 95
           +++L+ R+++ +F L + V + TNT      S S      D +  R++L+A  I  VY++
Sbjct: 15  TVLLLLRVLTAAFLLITVVLISTNTVTLEISSTSIKLPFNDVYAYRYMLSAAVIGLVYAV 74

Query: 96  FEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKET 149
            ++  ++ + + G T     L   FDF  D+V +YLL   SAAG  + + LK+T
Sbjct: 75  VQLFLTISQFATGKT---HPLTYQFDFYGDKVISYLLATGSAAGFGVSKDLKDT 125


>At5g62820 unknown protein
          Length = 297

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 31/132 (23%), Positives = 60/132 (44%), Gaps = 3/132 (2%)

Query: 56  LASSVFMLTNTHGSDSPHWYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEV 115
           ++ S+     T G     +  Y  +R+ LA N I  VYS FE   +   I++ + +    
Sbjct: 163 ISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCG 222

Query: 116 LQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVALGYAGFVF 175
               F F  DQ+ AYLL++AS+     V    +  +    + F   +  ++A+ +  F  
Sbjct: 223 FHDLFVFSMDQLLAYLLMSASSCAATRV---DDWVSNWGKDEFTQMATASIAVSFLAFGA 279

Query: 176 LGFTSLLTGFRV 187
              ++L++ +R+
Sbjct: 280 FAVSALISSYRL 291


>At3g16300 hypothetical protein
          Length = 212

 Score = 47.0 bits (110), Expect = 7e-06
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 7/116 (6%)

Query: 74  WYHYDTFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLL 133
           W   D+  +++  ++   +YSL +++ S   + R + V P   Q WF F  DQ+  Y ++
Sbjct: 88  WSLSDSLIYLVVVSSATVLYSLIQLIISGTRLMRKSPVIPTRTQAWFCFVADQIIGYAMV 147

Query: 134 AASAAGTAM-------VRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGFTSLL 182
           +  +A   +       +R +   + C +   FC     ++      F+ L  +SLL
Sbjct: 148 SGGSAALGVTNMNRTGIRHMPLPNFCKSLGFFCDHLAGSIVFALFAFLLLAASSLL 203


>At3g14380 unknown protein
          Length = 178

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 16/152 (10%)

Query: 46  VFRLISFSFSLASSVFMLTNTHGSD--SPHWYHYDTFRFVLAANAIVAVYSLFEMVASVW 103
           V R+ S + S+   V M+ N+  ++  S  + +   F ++++AN + A YSL   +A + 
Sbjct: 26  VLRVASMALSITGLVIMIKNSISNEFGSVSYSNIGAFMYLVSANGVCAAYSLLSALAIL- 84

Query: 104 EISRGATVFP-EVLQVWFDFGHDQVFAYLLLAASAAGTAMVR-------TLKETDTCTAS 155
                A   P   +QV   F  DQV  Y++LAA A     V         +  +  C + 
Sbjct: 85  -----ALPCPISKVQVRTLFLLDQVVTYVVLAAGAVSAETVYLAYYGNIPITWSSACDSY 139

Query: 156 NAFCVQSDIAVALGYAGFVFLGFTSLLTGFRV 187
            +FC  + I+V   +   +     SL++ +R+
Sbjct: 140 GSFCHNALISVVFTFVVSLLYMLLSLISSYRL 171


>At4g25825 unknown protein
          Length = 175

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 35/156 (22%), Positives = 66/156 (41%), Gaps = 18/156 (11%)

Query: 45  LVFRLISFSFSLASSVFMLTNTHGSDSPHWYHYDTFRFVLAANA------IVAVYSLFEM 98
           ++ RL    F L +S  +  ++   +  + +   +FR++LA  A      +VA Y+L ++
Sbjct: 9   VILRLCIVFFLLLTSCLIGLDSQTKEIAYIHKNVSFRYLLALEAELYIDVVVAAYNLVQL 68

Query: 99  VASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAG-------TAMVRTLKETDT 151
               + + +  T  P+    WF +  DQ  AY++ A ++A            R L+    
Sbjct: 69  GLGWYNVEQ-KTSNPK----WFSYLLDQTAAYVVFAGTSAAAQHSLLVVTGSRELQWMKW 123

Query: 152 CTASNAFCVQSDIAVALGYAGFVFLGFTSLLTGFRV 187
           C     FC Q   A+ L Y     +   S ++ F +
Sbjct: 124 CYKFTRFCFQMGSAIILNYIAAALMVLLSSISAFNL 159


>At2g35760 unknown protein
          Length = 201

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 83  VLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLA--ASAAGT 140
           ++  N I A YSL + V  V  + +G  +F + L  W  F  DQ  AYL +A  A+AA +
Sbjct: 76  LVVVNGIAAGYSLVQAVRCVVGLMKGRVLFSKPL-AWAIFFGDQAVAYLCVAGVAAAAQS 134

Query: 141 AMVRTLKETD-----TCTASNAFCVQSDIAVALGYAGFVFLGFTSLLTGFRV 187
           A    L E +      C     FC Q    +A      + +   S ++ F V
Sbjct: 135 AAFAKLGEPELQWMKICNMYGKFCNQVGEGIASALFACIGMVLISCISAFGV 186


>At5g06200 putative protein
          Length = 202

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 79  TFRFVLAANAIVAVYSLFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAA 138
           TF+F + A AIVA Y +  +  SV  I R   V P +L +      D     L  AA++A
Sbjct: 88  TFQFFVVAIAIVAGYLVLSLPFSVVTIVRPLAVAPRLLLLVL----DTAALALDTAAASA 143

Query: 139 GTAMVRTLKETDT-------CTASNAFCVQSDIAVALGYAGFVFLGFTSLLTG 184
             A+V      +T       C     FC ++  AV   +A   FL    +++G
Sbjct: 144 AAAIVYLAHNGNTNTNWLPICQQFGDFCQKTSGAVVSAFASVTFLAILVVISG 196


>At4g25040 unknown protein
          Length = 170

 Score = 33.9 bits (76), Expect = 0.058
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 12/145 (8%)

Query: 48  RLISFSFSLASSVFMLTN-----THGSDSPHWYHYDT-FRFVLAANAIVAVYSLFEMVAS 101
           R+++   ++AS   M+TN      +G      Y Y + FR+++ A   V   +LF +V +
Sbjct: 22  RVLTIGAAMASMWVMITNREVASVYGIAFEAKYSYSSAFRYLVYAQIAVCAATLFTLVWA 81

Query: 102 VWEISRGATVFPEVLQVWFDFGHDQVFAYLLLAASAAGTAMVRTLKET---DTCTASNAF 158
              + R   VF      +FD            AA A G       K+      C   + +
Sbjct: 82  CLAVRRRGLVF---ALFFFDLLTTLTAISAFSAAFAEGYVGKYGNKQAGWLPICGYVHGY 138

Query: 159 CVQSDIAVALGYAGFVFLGFTSLLT 183
           C +  I++A+ +A F+ L   ++LT
Sbjct: 139 CSRVTISLAMSFASFILLFILTVLT 163


>At4g03540 hypothetical protein
          Length = 164

 Score = 33.1 bits (74), Expect = 0.100
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 26/144 (18%)

Query: 45  LVFRLISFSFSLASSVFMLTNTHGSD------SPHWYHYDTFRFVLAANAIVAVYSLFEM 98
           LV RL +F  +LA+ + M+T+   +          +     F++ + ANA+V+VYS   +
Sbjct: 11  LVLRLAAFGAALAALIVMITSRERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFLVL 70

Query: 99  VASVWEISRGATVFPEVLQVW-FDFGHDQVFAYLLLAASAAGTAMVRTLKETDT------ 151
                         P+   +W F    D V   LL ++ +A  A+ +  K+ +       
Sbjct: 71  ------------FLPKESLLWKFVVVLDLVMTMLLTSSLSAALAVAQVGKKGNANAGWLP 118

Query: 152 -CTASNAFCVQSDIAVALGYAGFV 174
            C     FC Q   A+  G+   V
Sbjct: 119 ICGQVPKFCDQITGALIAGFVALV 142


>At5g04970 pectinesterase
          Length = 624

 Score = 30.8 bits (68), Expect = 0.49
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 8   LRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVFMLTNTH 67
           +RN ADG   +  +R S   +  T+  H LR+F     ++  I F F  A+++F   N +
Sbjct: 419 VRNNADG---STFYRCSFEGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAAIFQNCNIY 475


>At3g10720 pectinesterase like protein
          Length = 619

 Score = 30.4 bits (67), Expect = 0.65
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 8   LRNGADGGDNNNNHRSSSPRFHSTMAEHKLRRFNSLILVFRLISFSFSLASSVFMLTNTH 67
           LRN A+G   ++ +R S   +  T+  H LR+F     ++  + F F  A+++F   N +
Sbjct: 414 LRNNAEG---SSFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNIY 470


>At1g03700 putative protein
          Length = 164

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 36/158 (22%), Positives = 59/158 (36%), Gaps = 26/158 (16%)

Query: 45  LVFRLISFSFSLASSVFMLTNTHGSDS------PHWYHYDTFRFVLAANAIVAVYSLFEM 98
           LV R  +F  +L + + M+T+   S          +     F++ + ANAIV VYS   +
Sbjct: 11  LVLRFAAFCAALGAVIAMITSRERSSFFVISLVAKYSDLAAFKYFVIANAIVTVYSFLVL 70

Query: 99  VASVWEISRGATVFPEVLQVW-FDFGHDQVFAYLLLAASAAGTAMVRTLKETDT------ 151
                         P+   +W F    D +   LL ++ +A  A+ +  K  +       
Sbjct: 71  ------------FLPKESLLWKFVVVLDLMVTMLLTSSLSAAVAVAQVGKRGNANAGWLP 118

Query: 152 -CTASNAFCVQSDIAVALGYAGFVFLGFTSLLTGFRVV 188
            C     FC Q   A+  G    V   F  + +   VV
Sbjct: 119 ICGQVPRFCDQITGALIAGLVALVLYVFLLIFSIHHVV 156


>At1g48840 unknown protein
          Length = 691

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 127 VFAYLLLAASAAGTAMVRTLKETDTCTASNAFCVQSDIAVALGYAGFVFLGFTSLLTGFR 186
           V   LLL A+  G  ++  +   D    S  FC+ S   +  G+ G+VF   T  + GF 
Sbjct: 493 VMKELLLPATEIGNWLLSLVYWEDPLK-SFVFCLLSTFIIYRGWIGYVFAIATLFIAGFM 551

Query: 187 VV 188
           V+
Sbjct: 552 VL 553


>At1g74750 
          Length = 855

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 9/51 (17%)

Query: 95  LFEMVASVWEISRGATVFPEVLQVWFDFGHDQVFAYLL--LAASAAGTAMV 143
           L E   SVWE++ G  V+P+ L+       ++ ++Y L  L   + GTA++
Sbjct: 724 LKEEAGSVWEVAAGKNVYPDALR-------EKSYSYWLINLHVMSEGTAVI 767


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.328    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,208,562
Number of Sequences: 26719
Number of extensions: 150733
Number of successful extensions: 584
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 24
length of query: 199
length of database: 11,318,596
effective HSP length: 94
effective length of query: 105
effective length of database: 8,807,010
effective search space: 924736050
effective search space used: 924736050
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)


Lotus: description of TM0180a.7