BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0178.7
(1813 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31080 putative non-LTR retroelement reverse transcriptase 513 e-145
At4g15590 reverse transcriptase like protein 446 e-125
At3g32110 non-LTR reverse transcriptase, putative 390 e-108
At1g24640 hypothetical protein 353 5e-97
At2g45230 putative non-LTR retroelement reverse transcriptase 345 2e-94
At2g01840 putative non-LTR retroelement reverse transcriptase 330 5e-90
At2g25550 putative non-LTR retroelement reverse transcriptase 312 1e-84
At4g10830 putative protein 305 2e-82
At2g31520 putative non-LTR retroelement reverse transcriptase 302 1e-81
At3g31420 hypothetical protein 297 3e-80
At4g09710 RNA-directed DNA polymerase -like protein 293 5e-79
At3g30570 putative reverse transcriptase 290 4e-78
At1g25430 hypothetical protein 257 4e-68
At2g05200 putative non-LTR retroelement reverse transcriptase 251 4e-66
At1g31100 hypothetical protein 246 9e-65
At4g26360 putative protein 243 6e-64
At2g01550 putative non-LTR retroelement reverse transcriptase 233 1e-60
At2g16680 putative non-LTR retroelement reverse transcriptase 227 5e-59
At1g47910 reverse transcriptase, putative 227 5e-59
At2g11240 pseudogene 222 1e-57
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 513 bits (1322), Expect = e-145
Identities = 387/1279 (30%), Positives = 595/1279 (46%), Gaps = 102/1279 (7%)
Query: 561 IYASPIPVKREELWSHLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*F-LPTRASRFAAI 619
+YA+P +R LW L + + L P +I GD N IL +E GG L + F
Sbjct: 6 VYAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDW 65
Query: 620 LEGCGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDH 679
+ ++DLG G ++TW R + +++KRLDR R+ + EA V L + SDH
Sbjct: 66 INELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDH 125
Query: 680 CPLLINCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWTGETETVAGKLNKVRTKSCKF 739
PL + E +Q K+R K+
Sbjct: 126 APLYVQL-------------------------EPLQQ-------------RKLR----KW 143
Query: 740 NKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKA 799
N+EV+G I RK + ++ VQ L ++ D+ E L E +L QEE LWFQK+
Sbjct: 144 NREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLWFQKS 203
Query: 800 RENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAAD 859
RE + DRNT +FH TIIRR+RN+I LK +D W D+ L Y++ L++ +
Sbjct: 204 REKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRLYSLE 263
Query: 860 PDNTDVNMQHVMMPR-----LTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFF 914
DV+ M+P ++EAE+ K EV A+ M + A GPDG+ P F
Sbjct: 264 ----DVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVF 319
Query: 915 FKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYK 974
+++ WE VG + + V + FETG++ S + L+VLI KV P +++FRP+SLCNV++K
Sbjct: 320 YQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFK 379
Query: 975 LITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGASMAKKGTLAFKID 1034
+ITK++V R++ +++++IGP Q SF+PG +DN L QE +H M +KG + K+D
Sbjct: 380 IITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLD 439
Query: 1035 LEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKG 1094
LEKAYD V W FL++TL G IM V+ ++S+LWNG R SF P RGLR+G
Sbjct: 440 LEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQG 499
Query: 1095 DPLSPYLFVL-----CSLHGAIV----Y*YS*VGGNRSLEAN*NFPKGTTYFASLFCR*R 1145
DPLSPYLFVL C L A V + V S ++ F FA +
Sbjct: 500 DPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVA-Q 558
Query: 1146 ALVLSSII--FSSAIGGGDS*TILCLF---GVKDKYEQI*SDCFQGSTKSCERGDPEYCP 1200
++ ++ F A G S +F V + EQ+ S+ S C + +Y
Sbjct: 559 IRIIRRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISE---ESGIGCTKELGKYLG 615
Query: 1201 YPFCAKPWQVSWLEEGFQEVDSITYWIIFKKKLSSWKTNLLNMVGQVCLAKSVISAIPTY 1260
P K E + V + +L+ WK L++ G++ L K+V+S+IP +
Sbjct: 616 MPILQKRMNKETFGEVLERVSA---------RLAGWKGRSLSLAGRITLTKAVLSSIPVH 666
Query: 1261 TMQVFWLPRSINHKINQEMRRFIWLKNSGQRGWHRVNWKTLTQPKEHGGLAIKDMGDFNT 1320
M LP S +++ R F+W ++ H ++W+ + +PK GG+ ++ D N
Sbjct: 667 VMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNK 726
Query: 1321 SLLGKVVWLLANNSSKLWVQVLAHKYLHG--ESIFSVHRRANASPIWQGI-LKARDQLQE 1377
+L+ KV W L + LW +V+ KY G + + + S W+ + + R+ + +
Sbjct: 727 ALVAKVGWRLLQDKESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVK 786
Query: 1378 GFQFRMGDGSS-SVWYHDWTGKGKLAE-SLDFVHISD-TKLCLHELVDNNQWNLNRCMTV 1434
G + GDG + W W + L E D + + K+ + + WNL
Sbjct: 787 GVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLY 846
Query: 1435 FPLHIRDWFARVEPRVVANGIDRWSWKDNSDGISSVHDGYQWLREKKMAGVVHGDSWLWI 1494
P ++ V +V D SWK DG +V Y L+ G + I
Sbjct: 847 LPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRI 906
Query: 1495 *KLHAPEKL*VFIWLVLHDALPTNANRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQE 1554
KL PE++ VFIWLV + + TN R R L+ + C+ C+ EE +H LRDCP +
Sbjct: 907 WKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEP 966
Query: 1555 LWGK-LGAWGWSTFRLPDLKA*VKTQLQGSNNI---RFLAGLWGVWKWR-------NNVV 1603
+W + L F L + T + I F G+W WKWR +
Sbjct: 967 IWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKGIWPTLFGMGIWWAWKWRCCDVFGERKIC 1026
Query: 1604 LDPLPWTLDGAWQKLRHDHDELLQFSSGDLLDEHHFLINLWKPPPPEFVKLNTDGSFQDT 1663
D L + D A +++R H + + E + W+ P +VK+ TDG+ +
Sbjct: 1027 RDRLKFIKDMA-EEVRRVHVGAVGNRPNGVRVER---MIRWQVPSDGWVKITTDGASRGN 1082
Query: 1664 ASSMGGGGLIRDAKGAWLGGFMSHTSIGNPFLAEVLALRDGLCLAWVQGHRRIIREVDCA 1723
GG IR+ +G WLGGF + LAE+ GL +AW +G RR+ ++DC
Sbjct: 1083 HGLAAAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCK 1142
Query: 1724 GLSDILRFEDRCRLHDHAGVLQEIRELMERPWRCSVHWTNRDSNASADFLARRGGFLSTI 1783
+ L H + +++ + R W V R++N AD LA F +
Sbjct: 1143 LVVGFLS-TGVSNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANY-AFTLPL 1200
Query: 1784 GVVELMVAPLELEHLLLKD 1802
G+ P + LLL D
Sbjct: 1201 GLHCFDACPEGVRLLLLAD 1219
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 446 bits (1147), Expect = e-125
Identities = 296/937 (31%), Positives = 466/937 (49%), Gaps = 97/937 (10%)
Query: 628 LGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDHCPLLINCS 687
+G G R+TW R ++KRLDR + R+ + EA + C
Sbjct: 1 MGFKGNRFTWRRGLVESTFVAKRLDRVLFCAHARLKWQEALL----------------CP 44
Query: 688 GPEIVHHDRPFRFLASWVEHPQYKEVVQSAW-TGETETVAGKLNKVRTKSCKFNKEVYGS 746
+ RPFRF A+W+ H +KE++ ++W TG + VA LN++R + K+NKEV+G+
Sbjct: 45 AQNVDARRRPFRFEAAWLSHEGFKELLTASWDTGLSTPVA--LNRLRWQLKKWNKEVFGN 102
Query: 747 IFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKARENRVCF 806
I RK V L+ VQ L T D+ E L E+ LL QEE LWFQK+RE +
Sbjct: 103 IHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLAL 162
Query: 807 DDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADPDNTDVN 866
DRNT +FH T+IRR+RN+I LK ++ W +++ L + +Y++ L++ + DV+
Sbjct: 163 GDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLE----DVS 218
Query: 867 MQHVMMP-----RLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFFKKYWEL 921
+ +P RLT E++ ++EV A+ M + A GPDG+ P F+++ WE
Sbjct: 219 VVRGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWET 278
Query: 922 VGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVV 981
VG+ + K V + FE+G++ S + L+VL+ KV P + +FRP+SLCNV++K+ITK++V
Sbjct: 279 VGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMV 338
Query: 982 NRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGASMAKKGTLAFKIDLEKAYDS 1041
R++ +++++IGP Q SF+PG DN + QE +H M +KG + K+DLEKAYD
Sbjct: 339 IRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEKAYDR 398
Query: 1042 VSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYL 1101
+ W FL +TL G ++ IM CV+G +S+LWNG + SF P RGLR+GDP+SPYL
Sbjct: 399 IRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYL 458
Query: 1102 FVLC------SLHGAIVY*YS*VGGNRSLEAN*NFPKGT---------TYFASLFCR*RA 1146
FVLC + A+ G +S+ + PK + + + + +
Sbjct: 459 FVLCIERLCHQIETAVGR-----GDWKSISISQGGPKVSHVCFADDLILFAEASVAQKVS 513
Query: 1147 LVLSSIIFSSAIGGGDS*TILCLFGVKDKYEQI*SDCFQGSTKSCERGDPEYCPYPFCAK 1206
L S I FS+ + +D I ++ GST+ E G +Y P K
Sbjct: 514 LEKSKIFFSNNVS-------------RDLEGLITAETGIGSTR--ELG--KYLGMPVLQK 556
Query: 1207 PWQVSWLEEGFQEVDSITYWIIFKKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFW 1266
E + V S +LS WK+ L++ G++ L K+V+ +IP +TM
Sbjct: 557 RINKDTFGEVLERVSS---------RLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSIL 607
Query: 1267 LPRSINHKINQEMRRFIWLKNSGQRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKV 1326
LP S+ ++++ R F+W +R H ++WK + +PK GGL ++ D N +LL KV
Sbjct: 608 LPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKV 667
Query: 1327 VWLLANNSSKLWVQVLAHKYLHGESIFSVH------RRANASPIWQGILKARDQLQEGFQ 1380
W L N+ LW +VL KY + VH +A S W+ I G
Sbjct: 668 GWRLLNDKVSLWARVLRRKY----KVTDVHDSSWLVPKATWSSTWRSI---------GVG 714
Query: 1381 FRMGDGSSSVWYHDWTGKGKLAESLDFVHISDTKLCLHELVDNNQWNLNRCMTVFPLHIR 1440
R G + + + S + ++ + + W++ + P +
Sbjct: 715 LREGVAKGWILHEPLCTRATCLLSPEELNARVEEF----WTEGVGWDMVKLGQCLPRSVT 770
Query: 1441 DWFARVEPRVVANGIDRWSWKDNSDGISSVHDGYQWLREKKMAGVVHGDSWLWI*KLHAP 1500
D V + V DR SW+ SDG +V Y L +++ + + I + AP
Sbjct: 771 DRLHAVVIKGVLGLRDRISWQGTSDGDFTVGSAYVLLTQEEESKPCMESFFKRIWGVIAP 830
Query: 1501 EKL*VFIWLVLHDALPTNANRYRCKLAVSPGCTRCSS 1537
E++ VF+WLV + TN R R + C R S
Sbjct: 831 ERVRVFLWLVGQQVIMTNVERVRRHIGDIEVCQRLPS 867
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 390 bits (1002), Expect = e-108
Identities = 230/626 (36%), Positives = 339/626 (53%), Gaps = 39/626 (6%)
Query: 485 DIMFLLETRCQFSRASNFWNSTRFSPLFISEANGFSGGIWVLVNTATNLSSRLLYSHQQA 544
D++ + ET +AS F F +A G SGG+W+L T S + + Q
Sbjct: 595 DVLAIFETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRTGIGEVSVVDSTDQFI 654
Query: 545 VTFEV-WRENLSWVCSAIYASPIPVKREELWSHLLHIRSNLVLPWMIVGDMNEILHPNEV 603
+V ++N++ V +YA+P +R LW L + ++ P +I GD N I+ +E
Sbjct: 655 HAKDVNGKDNVNLV--VVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLDER 712
Query: 604 RGG*F-LPTRASRFAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRI 662
GG L + + F + ++DLG G ++TW R + R ++KRLDR + R+
Sbjct: 713 SGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHARL 772
Query: 663 AFPEASVEALHRIHSDHCPLLINCSGPEIVHHD--RPFRFLASWVEHPQYKEVVQSAWTG 720
+ EASV L + SDH PL + + PE+ + RPFRF A+W+ HP +KE++ ++W
Sbjct: 773 KWQEASVLHLPFLASDHAPLYVQLT-PEVSGNRGRRPFRFEAAWLSHPGFKELLLTSWNK 831
Query: 721 ETETVAGKLNKVRTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETEL 780
+ T ++ K VQ L+ + D+ + E EL
Sbjct: 832 DIST---------PEALK----------------------VQELLDLHQSDDLLKKEEEL 860
Query: 781 QAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDD 840
++ +L QEE++W QK+RE DRNT +FH TIIRR+RN+I L+ NDG W +
Sbjct: 861 LKDFDVVLEQEEVVWMQKSREKWFVHGDRNTKFFHTSTIIRRRRNQIEMLQDNDGRWLSN 920
Query: 841 RQLLAEEIQNYFQSLFAADP-DNTDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALLRM 899
Q L +Y++ L++ D D + L+EA+ EV A+ M
Sbjct: 921 AQELETHAIDYYKRLYSLDDLDAVVEQLPQEGFTALSEADFSSLTKPFSPLEVEGAIRSM 980
Query: 900 RSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPST 959
Y A GPDGF P F+++ WE+VG+ + K V D F +G + L+VLI KV P
Sbjct: 981 GKYKAPGPDGFQPVFYQQGWEVVGESVTKFVMDFFSSGSFPQETNDVLVVLIAKVLKPEK 1040
Query: 960 VKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHM 1019
+ +FRPISLCNV++K ITKV+V R++ ++N++IGP Q SF+PG DN + QE++H M
Sbjct: 1041 ITQFRPISLCNVLFKTITKVMVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSM 1100
Query: 1020 GASMAKKGTLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNG 1079
KG + K+DLEKAYD + W LEDTL G P VQ IM+CV G ++ +LWNG
Sbjct: 1101 RRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNG 1160
Query: 1080 SRLPSFKPGRGLRKGDPLSPYLFVLC 1105
+ +FKP RGLR+GDPLSPYLFVLC
Sbjct: 1161 EKTDAFKPLRGLRQGDPLSPYLFVLC 1186
Score = 191 bits (486), Expect = 3e-48
Identities = 158/610 (25%), Positives = 267/610 (42%), Gaps = 57/610 (9%)
Query: 1229 FKKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNS 1288
F +L+ WK +L+ G++ L K+V+++I +TM LP+S +++ R F+W
Sbjct: 1311 FSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTL 1370
Query: 1289 GQRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLH 1348
++ H V W + P+ GGL I+ N +L+ KV W + N+ S LW QV+ KY
Sbjct: 1371 EKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKV 1430
Query: 1349 GESIFSVHRR------ANASPIWQGI-LKARDQLQEGFQFRMGDGSS-SVWYHDWTGKGK 1400
G+ VH R +N S W+ + + RD + + +GDG W W +
Sbjct: 1431 GD----VHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETP 1486
Query: 1401 LA-ESLDFVHISDTKLCLHEL-VDNNQWNLNRCMTVFPLHIRDWFARVEPRVVANGIDRW 1458
+A +S+ + ++ +L D W++++ + R V V DR
Sbjct: 1487 IADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRL 1546
Query: 1459 SWKDNSDGISSVHDGYQWLRE----KKMAGVVHGDSWLWI*KLHAPEKL*VFIWLVLHDA 1514
+W SDG +V + L ++ ++G W K+ APE++ VF+WLV++ A
Sbjct: 1547 AWGMTSDGRFTVKSAFAMLTNDDSPRQDMSSLYGRVW----KVQAPERVRVFLWLVVNQA 1602
Query: 1515 LPTNANRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWGK--------------LG 1560
+ TN+ R R L S C C E +H LRDCP +W + L
Sbjct: 1603 IMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLL 1662
Query: 1561 AWGWSTFRLPDLKA*VKTQLQGSN-NIRFLAGLWGVWKWRNNVVLDPLPWTLDGAWQKLR 1619
W +S R +GS+ + F +W WKWR + + D ++R
Sbjct: 1663 EWLYSNLR-------QGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRD----RVR 1711
Query: 1620 HDHDELLQFSSGDLLDEHHFLINL-------WKPPPPEFVKLNTDGSFQDTASSMGGGGL 1672
D ++ S + L L W PP + K+NTDG+ + GG+
Sbjct: 1712 FIKDLAVEVSIAYSREVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGV 1771
Query: 1673 IRDAKGAWLGGFMSHTSIGNPFLAEVLALRDGLCLAWVQGHRRIIREVDCAGLSDILRFE 1732
+R++ GAW GGF + + LAE+ + GL +AW + + EVD + L+
Sbjct: 1772 LRNSAGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLK-T 1830
Query: 1733 DRCRLHDHAGVLQEIRELMERPWRCSVHWTNRDSNASADFLARRGGFLSTIGVVELMVAP 1792
H + +++ + + W + R++N+ AD LA F ++G+ P
Sbjct: 1831 GIGETHPLSFLVRLCHNFLSKDWTVRISHVYREANSLADGLANH-AFSLSLGLHVFDEIP 1889
Query: 1793 LELEHLLLKD 1802
+ L LL +D
Sbjct: 1890 ISLVMLLSED 1899
>At1g24640 hypothetical protein
Length = 1270
Score = 353 bits (906), Expect = 5e-97
Identities = 319/1223 (26%), Positives = 524/1223 (42%), Gaps = 122/1223 (9%)
Query: 508 FSPLFISEANGFSGGIWVLVNTATNLSSRLLYSHQQAVTFEVWRENLSWVCSAIYASPIP 567
+ ++ E G GG+ +L ++ + L + + + +V +++ S +Y P
Sbjct: 16 YDQVYTVEPVGKCGGLALLWKSSVQVD--LKFVDKNLMDAQVQFGAVNFCVSCVYGDPDR 73
Query: 568 VKREELWSHLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*FLPTRAS----RFAAILEGC 623
KR + W + I W + GD N+ILH E GG P R+ F +++GC
Sbjct: 74 SKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGG---PRRSDLDCKAFNEMIKGC 130
Query: 624 GMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDHCPLL 683
+V++ G +TW ++ + I RLDRA G+ W FP ++ L SDH P+L
Sbjct: 131 DLVEMPAHGNGFTWAGRRGDHWIQC-RLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVL 189
Query: 684 INCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWT----GETETVAGKLNKVRTKSCKF 739
I + + + FRF ++ KE + W+ G +VA +L R +
Sbjct: 190 IKLMSSQDSYRGQ-FRFDKRFLFKEDVKEAIIRTWSRGKHGTNISVADRLRACRKSLSSW 248
Query: 740 NKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKA 799
K+ + + +E L Q L + + ++ L+ +L YR +EE W QK+
Sbjct: 249 KKQNNLNSLDKINQLEAALEKEQ-SLVWPIFQRVSVLKKDLAKAYR----EEEAYWKQKS 303
Query: 800 RENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAAD 859
R+ + +RN+ YFHA R+R +I +LK +G+ E YF +LF +
Sbjct: 304 RQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAYFGNLFKSS 363
Query: 860 PDNTDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFFKKYW 919
+ + ++PR++E EV +E+ +A+ ++ SA GPDG FF+ YW
Sbjct: 364 NPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMSALFFQHYW 423
Query: 920 ELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLITKV 979
VG+ + V+ F G++ T + LIPK P+ + + RPISLC+V+YK+I+K+
Sbjct: 424 STVGNQVTSEVKKFFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKI 483
Query: 980 VVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGA-SMAKKGTLAFKIDLEKA 1038
+ R++P L I+ Q++F+ I DN +A E++H + +A K D+ KA
Sbjct: 484 MAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKA 543
Query: 1039 YDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLS 1098
YD V W++L L+ GF + V IM CVS S+L N RGLR+GDPLS
Sbjct: 544 YDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLS 603
Query: 1099 PYLFVLCS---LHGAIVY*YS*VGGNRSLEAN*NFP-------KGTTYFASLFCR*RALV 1148
P+LFVLC+ H ++ G ++ + N P + F R ++LV
Sbjct: 604 PFLFVLCTEGLTH--LLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLV 661
Query: 1149 LSSIIFSSAIGGGDS*TILCLFGVKDKYEQI*SDCFQGSTKSC-----ERGDPEYCPYPF 1203
L I+ + G + + L + + + +G+ ++C E G Y P
Sbjct: 662 LQKIL---KVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPE 718
Query: 1204 CAKPWQVSWLEEGFQEVDSITYWIIFKKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQ 1263
C +V L + K+KL W T L+ G+ L KSV A+P + M
Sbjct: 719 CFSGSKVDMLHYLKDRL---------KEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMS 769
Query: 1264 VFWLPRSINHKINQEMRRFIWLKNSGQRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLL 1323
F LP + + M F W R H +W+ L PK+ GGL +D+ FN +LL
Sbjct: 770 CFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALL 829
Query: 1324 GKVVWLLANNSSKLWVQVLAHKYLHGESIFSVHRRANASPIWQGILKARDQLQEGFQFRM 1383
K W L + L ++L +Y S W+ IL R+ L +G Q R+
Sbjct: 830 AKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRV 889
Query: 1384 GDGSS-SVWYHDWTGKGKLAESLDFVHISDTKLCLHELVD--NNQWNLNRCMTVFPLHIR 1440
GDG+S VW W I D L + L++ W+ + L +
Sbjct: 890 GDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEE---VLHDLFLP 946
Query: 1441 DWFARVEP-RVVANGIDRWSWKDNSDGISSVHDGYQWLREKKMAGVVHGD---------- 1489
+ R++ + V + D + WK N G SV Y WL + + + +
Sbjct: 947 EDILRIKAIKPVISQADFFVWKLNKSGDFSVKSAY-WLAYQTKSQNLRSEVSMQPSTLGL 1005
Query: 1490 -SWLWI*KLHAPEKL*VFIWLVLHDALPTNANRYRCKLAVSPGCTRCSSPEEDTIHCLRD 1548
+ +W L K+ +F+W V C E T H L
Sbjct: 1006 KTQVW--NLQTDPKIKIFLWKV------------------------CGELGESTNHTLFL 1039
Query: 1549 CPHSQELWGKLGAWGW--STFRLPDLKA*VKTQLQGSNNIRFLAG--------LWGVWKW 1598
CP S+++W L + + F + + + L+ +N + LW +WK
Sbjct: 1040 CPLSRQIWA-LSDYPFPPDGFSNGSIYSNINHLLENKDNKEWPINLRKIFPWILWRIWKN 1098
Query: 1599 RNNVVLDPLPWTLDGAWQKLRHDHDELLQFSSGD---------LLDEHHFL----INLWK 1645
RN+ + + + + K+R D E + D L + HF+ NLW
Sbjct: 1099 RNSFIFEGISYPATDTVIKIRDDVVEWFEAQCLDGEGSALNPPLSNGVHFVGSVSENLWI 1158
Query: 1646 PPPPEF---VKLNTDGSFQDTAS 1665
PP + V L++ SF +S
Sbjct: 1159 KPPANWDGIVLLHSRRSFAPISS 1181
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 345 bits (884), Expect = 2e-94
Identities = 209/661 (31%), Positives = 354/661 (52%), Gaps = 23/661 (3%)
Query: 456 LKIISWNVRGALNEHGQLFLKDLIRCKKPDIMFLLETRCQFSRASNFWNSTRFSPLFISE 515
++I+SWN +G N L+++ P+++FL ET+ + + N F L E
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 516 ANGFSGGIWVLVNTATNLSSRLLYSHQQAVTFEVWRENLSWVCSAIYASPIPVKREELWS 575
G SGG+ ++ + + ++L S ++ + + ++ + + IY P+ +R ELW
Sbjct: 61 PIGKSGGLALMWKDSVQI--KVLQSDKRLIDALLIWQDKEFYLTCIYGEPVQAERGELWE 118
Query: 576 HLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*FLPTRAS----RFAAILEGCGMVDLGMS 631
L + + PWM+ GD NE++ P+E GG P R F +L CG+ ++ S
Sbjct: 119 RLTRLGLSRSGPWMLTGDFNELVDPSEKIGG---PARKESSCLEFRQMLNSCGLWEVNHS 175
Query: 632 GGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDHCPLLINCSGPEI 691
G +++W+ +N+ L+ RLDR + + AW FP+A L +I SDH PL+ N G
Sbjct: 176 GYQFSWYGNRNDELVQC-RLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNW 234
Query: 692 VHHDRPFRFLASWVEHPQYKEVVQSAWTGE-TETVAGKLNKV---RTKSCKFNKEVYGSI 747
F++ WV+ +K+++ + W+ + T+T A + K+ R + K+ + S
Sbjct: 235 -RKWAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVSKPSS 293
Query: 748 FQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKARENRVCFD 807
R + ++ +L +++ + ++ RL+ EL EY EE W +K+R +
Sbjct: 294 AVRIQELQFKLDAATKQIPFDRR-ELARLKKELSQEYN----NEEQFWQEKSRIMWMRNG 348
Query: 808 DRNTAYFHAHTIIRRKRNKIHRLKLNDG-SWCDDRQLLAEEIQNYFQSLFAADPDNTDVN 866
DRNT YFHA T RR +N+I +L +G W D L + YF+ LFA++ V
Sbjct: 349 DRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDL-GRVAEAYFKKLFASEDVGYTVE 407
Query: 867 MQHVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFFKKYWELVGDDL 926
+ P +++ + A + KEEV +A + + GPDG + F ++++WE +GD +
Sbjct: 408 ELENLTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQI 467
Query: 927 WKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRP 986
++V+ F +G I++ + +T I LIPK+ + +FRPISLCNV+YK+I K++ NR++
Sbjct: 468 TEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKK 527
Query: 987 LLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGA-SMAKKGTLAFKIDLEKAYDSVSWA 1045
+L +I Q +F+ G I DN +A E++H + + + + +A K D+ KAYD V W
Sbjct: 528 ILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWP 587
Query: 1046 FLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLC 1105
FLE + GF + ++LIM CV +L NG+ P RGLR+GDPLSPYLFV+C
Sbjct: 588 FLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVIC 647
Query: 1106 S 1106
+
Sbjct: 648 T 648
Score = 179 bits (453), Expect = 2e-44
Identities = 155/576 (26%), Positives = 252/576 (42%), Gaps = 35/576 (6%)
Query: 1231 KKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSGQ 1290
KK+ W++N L+ G+ L K+V A+PTYTM F +P++I +I M F W
Sbjct: 774 KKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEG 833
Query: 1291 RGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHGE 1350
RG H W L++PK GGL K++ FN +LLGK +W + L +V +Y
Sbjct: 834 RGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKS 893
Query: 1351 SIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDGSS-SVWYHDWTG--KGKLAESLDF 1407
+ + S W+ I +A+ +++G + +G+G + +VW W G K A+++
Sbjct: 894 DPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKR 953
Query: 1408 VHISDTKLC--LHE-----LVDNNQWNLNRCMTVFPLHIRDWFARVEPRVVANGIDRWSW 1460
H+ +H L D WN N +FP + ++ + P DR++W
Sbjct: 954 SHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETR-DRFTW 1012
Query: 1461 KDNSDGISSVHDGYQWLRE--------KKMAGVVHGDSWLWI*KLHAPEKL*VFIWLVLH 1512
+ + G SV GY + E +++ + I KL P K+ F+W ++
Sbjct: 1013 EYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVN 1072
Query: 1513 DALPTNANRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWG-------KLGAWGWS 1565
+ L +N LA C RC S E H L CP ++ W G W S
Sbjct: 1073 NCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAES 1132
Query: 1566 TFR-LPDLKA*VKTQLQGSNNIRFLAG-LWGVWKWRNNVVLDPLPWTLDGAWQKLRHDHD 1623
FR + + + K+Q + S++ + LW +WK RN++V +T K D D
Sbjct: 1133 LFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMD 1192
Query: 1624 --ELLQFSSGDLLDEHHFLINLWKPPPPEFVKLNTDGSFQDTASSMGGGGLIRDAKG--A 1679
+ + W+PP +VK NTDG++ + G G ++R+ G
Sbjct: 1193 AWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLL 1252
Query: 1680 WLGGFMSHTSIGNPFLAEVLALRDGLCLAWVQGHRRIIREVDCAGLSDILRFEDRCRLHD 1739
WL G + S + EV ALR + +RR+I E D L ++ ++ +
Sbjct: 1253 WL-GLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLI--QNEMDIPS 1309
Query: 1740 HAGVLQEIRELMERPWRCSVHWTNRDSNASADFLAR 1775
A +Q+IR L+ +T R+ N AD AR
Sbjct: 1310 LAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTAR 1345
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 330 bits (846), Expect = 5e-90
Identities = 207/659 (31%), Positives = 339/659 (51%), Gaps = 19/659 (2%)
Query: 456 LKIISWNVRGALNEHGQLFLKDLIRCKKPDIMFLLETRCQFSRASNFWNSTRFSPLFISE 515
+++ WN +G L+++ R D++FL+ET+ Q + + F + I
Sbjct: 363 MRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIIS 422
Query: 516 ANGFSGGIWVLVNTATNLSSRLLYSHQQAVTFEVWRENLSWVCSAIYASPIPVKREELWS 575
G SGG+ +V +LS +++ + V V +N ++ S IY PIP +R LW
Sbjct: 423 PRGLSGGL--VVYWKKHLSIQVISHDVRLVDLYVEYKNFNFYLSCIYGHPIPSERHHLWE 480
Query: 576 HLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*FLPTRA-SRFAAILEGCGMVDLGMSGGR 634
L + ++ PWM+ GD NEIL+ NE +GG + F ++ C M DL G
Sbjct: 481 KLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNP 540
Query: 635 YTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDHCPLLINCSGPEIVHH 694
Y+W K+ N I S LDR + W+ +FP E L SDH P++I+ + E+
Sbjct: 541 YSWVGKRQNETIESC-LDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIA-EEVCTK 598
Query: 695 DRPFRFLASWVEHPQYKEVVQSAWT-GETETVAG---KLNKVRTKSCKFNKEVYGSIFQR 750
FR+ + + + VQ W G +++ G KL+ R + K+ + + ++
Sbjct: 599 RGQFRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEK 658
Query: 751 KRWVEGRLRGVQRE--LNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKARENRVCFDD 808
++ R+ +R+ L ++ + RL +L YR EEL W K+R + D
Sbjct: 659 IETLKYRVDAAERDHTLPHQT---ILRLRQDLNQAYR----DEELYWHLKSRNRWMLLGD 711
Query: 809 RNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADPDNTDVNMQ 868
RNT +F+A T +R+ RN+I + G + + +NYF LF + +
Sbjct: 712 RNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEII 771
Query: 869 HVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWK 928
+ P++TE H+ V +EV A+ + + A G DGF F+ W+L+G+D+
Sbjct: 772 SGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDVCL 831
Query: 929 LVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLL 988
+VR FE+ ++D+ + +T I LIPK+ P + ++RPISLC YK+I+K+++ R++ L
Sbjct: 832 MVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCL 891
Query: 989 NRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGASM-AKKGTLAFKIDLEKAYDSVSWAFL 1047
+I Q +F+PG I DN +A E++H + + + G +A K D+ KAYD V W FL
Sbjct: 892 GDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFL 951
Query: 1048 EDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLCS 1106
E ++Q GF R V+ IM CV+ + +L NGS P RG+R+GDPLSPYLF+ C+
Sbjct: 952 EKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCA 1010
Score = 146 bits (369), Expect = 9e-35
Identities = 146/610 (23%), Positives = 244/610 (39%), Gaps = 77/610 (12%)
Query: 1216 GFQEVDSITYWII-FKKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHK 1274
G ++V+ Y + K++ W N L+ G+ + K++ A+P Y+M F LP I ++
Sbjct: 1120 GRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNE 1179
Query: 1275 INQEMRRFIWLKNSGQRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNS 1334
IN + F W K + G L KD+ FN +LL K W + N
Sbjct: 1180 INSLITAFWWGKEN------------------EGDLGFKDLHQFNRALLAKQAWRILTNP 1221
Query: 1335 SKLWVQVLAHKYLHGESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDGSSS-VWYH 1393
L ++ Y + ++ +AS W I + + LQ+G + R+GDG ++ +W
Sbjct: 1222 QSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWED 1281
Query: 1394 DWTGKGKLAESLDFVHISDTKLCLHELVDNNQW---------NLNRCMTVFPLHIRDWFA 1444
W + + D K+ + +W N L++ ++ A
Sbjct: 1282 PWLPTLPPRPARGPILDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAA 1341
Query: 1445 RVEPRVVANGIDRWSWKDNSDGISSVHDGYQW------LREKKMAGVVHGDSWLW--I*K 1496
R D + W + +V GY W L E+++ + GD L I +
Sbjct: 1342 R----------DSYKWAYTRNTQYTVRSGY-WVATHVNLTEEEIINPLEGDVPLKQEIWR 1390
Query: 1497 LHAPEKL*VFIWLVLHDALPTNANRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELW 1556
L K+ FIW L AL T + P C RC + +E H + C ++Q +W
Sbjct: 1391 LKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVW 1450
Query: 1557 GKLGAWGWSTFRLPD-LKA*VKTQLQG--SNNIRFLAGL------WGVWKWRNNVV---L 1604
G + D L+ ++ LQG + N+ L GL W +WK RN + L
Sbjct: 1451 RSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQL 1510
Query: 1605 DPLPWTLDGAWQKLRHDHDELLQFSSGDLLDEHHFL---------INLWKPPPPEFVKLN 1655
D PW + QK + E ++ D H+ W PP F+K N
Sbjct: 1511 DRFPWKVA---QKAEQEATEWVETMVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCN 1567
Query: 1656 TDGSFQDTASSMGGGGLIRDAKGAWL-GGFMSHTSIGNPFLAEVLALRDGLCLAWVQGHR 1714
D + G ++RD G L G + AE L L + W++G+
Sbjct: 1568 FDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGYC 1627
Query: 1715 RIIREVDCAGLSDIL-RFEDRCRLHDHAGVLQEIRELMERPWRCSVHWTNRDSNASADFL 1773
+ E D L++++ + ED H +L +IR M + S+ + NR+ N +AD L
Sbjct: 1628 YVWFEGDNLELTNLINKTEDH---HLLETLLYDIRFWMTKLPFSSIGYVNRERNLAADKL 1684
Query: 1774 ARRGGFLSTI 1783
+ +S++
Sbjct: 1685 TKYANSMSSL 1694
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 312 bits (799), Expect = 1e-84
Identities = 202/644 (31%), Positives = 323/644 (49%), Gaps = 34/644 (5%)
Query: 478 LIRCKKPDIMFLLETRCQFSRASNFWNSTRFSPLFISEANGFSGGIWVLVNTATNLSSRL 537
L R DI+FL+ET Q + F + NG SGG+ ++ N+S L
Sbjct: 404 LFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKN--NVSLSL 461
Query: 538 LYSHQQAVTFEVWRENLSWVCSAIYASPIPVKREELWSHLLHIRSNLVLPWMIVGDMNEI 597
+ ++ + V N S+ S +Y P +R +LW L HI N W++VGD NEI
Sbjct: 462 ISQDERLIDSHVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEI 521
Query: 598 LHPNEVRGG*FLPTRAS----RFAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSKRLDR 653
L E GG P R F ++ C + D+ G R++W +++ + LDR
Sbjct: 522 LSNAEKIGG---PMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCC-LDR 577
Query: 654 AMGDGAWRIAFPEASVEALHRIHSDHCPLLINCSGPEIVHHDRPFRFLASWVEHPQYKEV 713
+ AW FP A +E L SDH P+L++ + + FRF ++ P +K +
Sbjct: 578 VFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFN-ESFPRRSKLFRFDNRLIDIPTFKRI 636
Query: 714 VQSAWTGETETVAGKLNKVRTKSCK--FNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTF 771
VQ++W + + + + R SC+ + + S E R++ +Q LN +
Sbjct: 637 VQTSWRTNRNSRSTPITE-RISSCRQAMARLKHASNLNS----EQRIKKLQSSLNRAM-- 689
Query: 772 DMTR-----LETELQAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNK 826
+ TR L +LQ EE+ W QK+R + D+NT YFHA T R +N+
Sbjct: 690 ESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNR 749
Query: 827 IHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADPDNTDVNMQHVMMPRLTEAERHKAEAE 886
++ + + G + + Q++F ++F+ + + + + + +
Sbjct: 750 VNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTN----GIKVSPIDFADFKSTVTNTVNLD 805
Query: 887 VIKE----EVFQALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDS 942
+ KE E++ A+ ++ A GPDG F+K W++VG D+ V+ FET + S
Sbjct: 806 LTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPS 865
Query: 943 LLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPG 1002
+ T I +IPK+ +P+T+ ++RPI+LCNV+YK+I+K +VNR++ LN I+ Q +F+PG
Sbjct: 866 INHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPG 925
Query: 1003 MGIMDNAFLAQEIIHHMGA-SMAKKGTLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLV 1061
I DN +A E++H + K +A K D+ KAYD V W FLE T+ FGF N+ +
Sbjct: 926 RIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWI 985
Query: 1062 QLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLC 1105
IM V + S+L NGS P RG+R+GDPLSPYLF+LC
Sbjct: 986 GWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILC 1029
Score = 158 bits (399), Expect = 3e-38
Identities = 152/609 (24%), Positives = 234/609 (37%), Gaps = 99/609 (16%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
KK+ S+W L+ G+ + KSV A+P Y M F LP+ I +I + F W K S
Sbjct: 1155 KKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASN 1214
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
QRG V WK L K+ GGL +D+ FN +LL K W L + L+ +V+ +Y
Sbjct: 1215 QRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKD 1274
Query: 1350 ESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDG-------------------SSSV 1390
SI R S W +L L++G + +GDG ++
Sbjct: 1275 VSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEE 1334
Query: 1391 WYHDWTGKGKLAESLDFVHISDTKLCLHELVDNNQWNLNRCMTVFPLHIRDWFARVEPRV 1450
Y + T + D+K + + VD + +H R + A+
Sbjct: 1335 TYKEMTINNLFERKGSYYFWDDSK--ISQFVDQSDHGF--------IH-RIYLAK----- 1378
Query: 1451 VANGIDRWSWKDNSDGISSVHDGYQWLREKKMAGV-----VHG--DSWLWI*KLHAPEKL 1503
+ D+ W N+ G +V GY L + HG D I L KL
Sbjct: 1379 -SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKL 1437
Query: 1504 *VFIWLVLHDALPTNANRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWGKLGAWG 1563
F+W L AL T + + P C RC E H L CP + W
Sbjct: 1438 KHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAW------- 1490
Query: 1564 WSTFRLPDLKA*VKTQLQG-------SNNIRFLAG--------------LWGVWKWRNNV 1602
RL D + ++ QL SN + F+ +W +WK RNNV
Sbjct: 1491 ----RLSD-SSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNV 1545
Query: 1603 VLDPL---PWTLDGAWQKLRHDHDELLQFSSGDLLDEHHFLINL--WKPPPPEFVKLNTD 1657
V + P + + HD Q N W+ PP +VK N D
Sbjct: 1546 VFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFD 1605
Query: 1658 GSFQDTASSMGGGGLIRDAKG---AWLGGFMSHTSIGNPFLAEVLALRDGLCLAWVQGHR 1714
F GG +IR+ G +W ++HTS NP AE AL L W++G+
Sbjct: 1606 AGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTS--NPLEAETKALLAALQQTWIRGYT 1663
Query: 1715 RIIREVDCAGLSDILRFEDRCRLHDHAGVLQEIRELMERPWRCSVHWTNRDSNASADFLA 1774
++ E DC L +++ + H+ + + ++ W N+ ++ F+
Sbjct: 1664 QVFMEGDCQTLINLIN-----GISFHSSLANHLEDIS--------FWANKFASIQFGFIR 1710
Query: 1775 RRGGFLSTI 1783
++G L+ +
Sbjct: 1711 KKGNKLAHV 1719
>At4g10830 putative protein
Length = 1294
Score = 305 bits (781), Expect = 2e-82
Identities = 195/641 (30%), Positives = 317/641 (49%), Gaps = 20/641 (3%)
Query: 475 LKDLIRCKKPDIMFLLETRCQFSRASNFWNSTRFSPLFISEANGFSGGIWVLVNTATNLS 534
L +L + K D++FL+ET + SN + F + G SGG+ +L + LS
Sbjct: 381 LSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALLWKDSVRLS 440
Query: 535 SRLLYSHQQAVTFEVWRENLSWVCSAIYASPIPVKREELWSHLLHIRSNLVLPWMIVGDM 594
+ LY + + + N+++ S +Y P +R LW+H ++ PW+++GD
Sbjct: 441 N--LYQDDRHIDVHISINNINFYLSRVYGHPCQSERHSLWTHFENLSKTRNDPWILIGDF 498
Query: 595 NEILHPNEVRGG*FLPTRAS----RFAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSKR 650
NEIL NE GG P R F ++ C + D+ G R++W ++++ +
Sbjct: 499 NEILSNNEKIGG---PQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSHTVKCC- 554
Query: 651 LDRAMGDGAWRIAFPEASVEALHRIHSDHCPLLINCSGPEIVHHDRPFRFLASWVEHPQY 710
LDRA + FP A +E L SDH PL ++ E RPFRF +E P +
Sbjct: 555 LDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSLEKTE-TRKMRPFRFDKRLLEVPHF 613
Query: 711 KEVVQSAWT----GETETVAGKLNKVRTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELN 766
K V++ W G+ + + ++ R K + + R ++ L +N
Sbjct: 614 KTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKAMSSVN 673
Query: 767 YRVTFDMTRLETELQAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNK 826
++ ++ EL YR EE W QK+R + DRNT +FHA T R N+
Sbjct: 674 RTERRTISHIQRELTVAYR----DEERYWQQKSRNQWMKEGDRNTEFFHACTKTRFSVNR 729
Query: 827 IHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADPDNTDVNMQHVMMPRLTEAERHKAEAE 886
+ +K +G + + Q +F ++ ++ + P +TE +
Sbjct: 730 LVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQINDDLTKD 789
Query: 887 VIKEEVFQALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLET 946
+ E++ A+ + A GPDG F+K WE+VG D+ K V+ F T + S+ T
Sbjct: 790 LSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHT 849
Query: 947 LIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIM 1006
I +IPK+ +P T+ ++RPI+LCNV+YK+I+K +V R++ L+ I+ Q +F+PG +
Sbjct: 850 NICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLVN 909
Query: 1007 DNAFLAQEIIHHMGA-SMAKKGTLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIM 1065
DN +A E++H + + +A K D+ KAYD V W FLE T+ FGF ++ IM
Sbjct: 910 DNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIM 969
Query: 1066 RCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLCS 1106
V N S+L NG + +P RG+R+GDPLSPYLF+LC+
Sbjct: 970 GAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCA 1010
Score = 107 bits (268), Expect = 5e-23
Identities = 54/159 (33%), Positives = 86/159 (53%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
KK+ SSW L+ G+ + KSV ++P Y M F LP +I +I + F W KN+
Sbjct: 1135 KKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAK 1194
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
+R + WK L K+ GGL +D+ FN +LL K VW + NN + L+ +++ +Y
Sbjct: 1195 KREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFRE 1254
Query: 1350 ESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDGSS 1388
+SI R+ S W +L D +++G +F +GDG +
Sbjct: 1255 DSILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKT 1293
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 302 bits (774), Expect = 1e-81
Identities = 197/632 (31%), Positives = 315/632 (49%), Gaps = 34/632 (5%)
Query: 490 LETRCQFSRASNFWNSTRFSPLFISEANGFSGGIWVLVNTATNLSSRLLYSHQQAVTFEV 549
LET Q + F + NG SGG+ ++ N+S L+ ++ + V
Sbjct: 190 LETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKN--NVSLSLISQDERLIDSHV 247
Query: 550 WRENLSWVCSAIYASPIPVKREELWSHLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*FL 609
N S+ S +Y P +R +LW L HI N W++VGD NEIL E GG
Sbjct: 248 TFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGG--- 304
Query: 610 PTRAS----RFAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFP 665
P R F ++ C + D+ G R++W +++ + LDR + AW FP
Sbjct: 305 PMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCC-LDRVFINSAWTATFP 363
Query: 666 EASVEALHRIHSDHCPLLINCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWTGETETV 725
A E L SDH P+L++ + + FRF ++ P +K +VQ++W +
Sbjct: 364 YAETEFLDFTGSDHKPVLVHFN-ESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSR 422
Query: 726 AGKLNKVRTKSCK--FNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTR-----LET 778
+ + + R SC+ + + S E R++ +Q LN + + TR L
Sbjct: 423 STPITE-RISSCRQAMARLKHASNLNS----EQRIKKLQSSLNRAM--ESTRRVDRQLIP 475
Query: 779 ELQAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWC 838
+LQ EE+ W QK+R + D+NT YFHA T R +N+++ + + G
Sbjct: 476 QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 535
Query: 839 DDRQLLAEEIQNYFQSLFAADPDNTDVNMQHVMMPRLTEAERHKAEAEVIKE----EVFQ 894
+ + Q++F ++F+ + + + + + ++ KE E++
Sbjct: 536 TGDKEIGNHAQDFFTNIFSTN----GIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYD 591
Query: 895 ALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKV 954
A+ ++ A GPDG F+K W++VG D+ V+ FET + S+ T I +IPK+
Sbjct: 592 AICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKI 651
Query: 955 DSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQE 1014
+P+T+ ++RPI+LCNV+YK+I+K +VNR++ LN I+ Q +F+PG I DN +A E
Sbjct: 652 TNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHE 711
Query: 1015 IIHHMGA-SMAKKGTLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNL 1073
++H + K +A K D+ KAYD V W FLE T+ FGF N+ + IM V +
Sbjct: 712 VMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHY 771
Query: 1074 SMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLC 1105
S+L NGS P RG+R+GDPLSPYLF+LC
Sbjct: 772 SVLINGSPHGYITPTRGIRQGDPLSPYLFILC 803
Score = 155 bits (393), Expect = 2e-37
Identities = 153/609 (25%), Positives = 234/609 (38%), Gaps = 99/609 (16%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
KK+ S+W L+ G+ + KSV A+P Y M F LP+ I +I + F W K S
Sbjct: 929 KKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASN 988
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
QRG V WK L K+ GGL +D+ FN +LL K W L + L+ +V+ +Y
Sbjct: 989 QRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKD 1048
Query: 1350 ESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDG-------------------SSSV 1390
SI R S W +L L++G + +GDG ++
Sbjct: 1049 VSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEE 1108
Query: 1391 WYHDWTGKGKLAESLDFVHISDTKLCLHELVDNNQWNLNRCMTVFPLHIRDWFARVEPRV 1450
Y + T + D+K + + VD + +H R + A+
Sbjct: 1109 TYKEMTINNLFERKGSYYFWDDSK--ISQFVDQSDHGF--------IH-RIYLAK----- 1152
Query: 1451 VANGIDRWSWKDNSDGISSVHDGYQWLREKKMAGV-----VHG--DSWLWI*KLHAPEKL 1503
+ D+ W N+ G +V GY L + HG D I L KL
Sbjct: 1153 -SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKL 1211
Query: 1504 *VFIWLVLHDALPTNANRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWGKLGAWG 1563
F+W L AL T + + P C RC E H L CP + W W
Sbjct: 1212 KHFLWRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAW-----W- 1265
Query: 1564 WSTFRLPDLKA*VKTQLQG-------SNNIRFLAG--------------LWGVWKWRNNV 1602
L D + ++ QL SN + F+ +W +WK RNNV
Sbjct: 1266 -----LSD-SSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNV 1319
Query: 1603 VLDPL---PWTLDGAWQKLRHDHDELLQFSSGDLLDEHHFLINL--WKPPPPEFVKLNTD 1657
V + P + + HD Q N W+ PP +VK N D
Sbjct: 1320 VFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFD 1379
Query: 1658 GSFQDTASSMGGGGLIRDAKG---AWLGGFMSHTSIGNPFLAEVLALRDGLCLAWVQGHR 1714
F GG +IR+ G +W ++HTS NP AE AL L W++G+
Sbjct: 1380 AGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTS--NPLEAETKALLAALQQTWIRGYT 1437
Query: 1715 RIIREVDCAGLSDILRFEDRCRLHDHAGVLQEIRELMERPWRCSVHWTNRDSNASADFLA 1774
++ E DC L +++ + H+ + + ++ W N+ ++ F+
Sbjct: 1438 QVFMEGDCQTLINLIN-----GISFHSSLANHLEDIS--------FWANKFASIQFGFIR 1484
Query: 1775 RRGGFLSTI 1783
R+G L+ +
Sbjct: 1485 RKGNKLAHV 1493
>At3g31420 hypothetical protein
Length = 1491
Score = 297 bits (761), Expect = 3e-80
Identities = 198/637 (31%), Positives = 319/637 (49%), Gaps = 18/637 (2%)
Query: 481 CKKP--DIMFLLETRCQFSRASNFWNSTRFSPLFISEANGFSGGIWVLVNTATNLSSRLL 538
C+K DI+ L ET+ Q R + F +G SGG+ V N++ ++ L
Sbjct: 204 CRKNLLDIICLSETKQQDDRIRDVGAELGFCNHVTVPPDGLSGGLVVFWNSSVDIF--LC 261
Query: 539 YSHQQAVTFEVWRENLSWVCSAIYASPIPVKREELWSHLLHIRSNLV-LPWMIVGDMNEI 597
+S+ V V S+ S +Y P P R LW L + + W I+GD NEI
Sbjct: 262 FSNSNLVDLHVKSNEGSFYLSFVYGHPNPSHRHHLWERLERLNTTRQGTAWFIMGDFNEI 321
Query: 598 LHPNEVRGG*FLPTRASR-FAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMG 656
L E RGG P R + F ++ GC DL G R++W K+ + + LDR M
Sbjct: 322 LSNREKRGGRLRPERTFQDFRNMVRGCNFTDLKSVGDRFSWAGKRGDHHVTCS-LDRTMA 380
Query: 657 DGAWRIAFPEASVEALHRIHSDHCPLLINCSGPEIVHHDRPFRFLASWVEHPQ-YKEVVQ 715
+ W FPE+ + SDH PL+ N S + R F S + H + +K+VV
Sbjct: 381 NNEWHTLFPESETVFMEYGESDHRPLVTNISAQK--EERRGFFSYDSRLTHKEGFKQVVL 438
Query: 716 SAWTGETETVAGKLNKVRTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMT- 774
+ W + G + + K + + + + E R++ ++ +L+ +
Sbjct: 439 NQWHRRNGSFEGD-SSLNRKLVECRQAISRWKKNNRVNAEERIKIIRHKLDRAIATGTAT 497
Query: 775 -RLETELQAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLN 833
R +++ + EE+ W K+R + DRNT YFH+ T RR RN++ ++ +
Sbjct: 498 PRERRQMRQDLNQAYADEEIYWQTKSRSRWLNAGDRNTRYFHSTTKTRRCRNRLLSVQDS 557
Query: 834 DGSWCDDRQLLAEEIQNYFQSLFAADPDNTDVNMQHVMM---PRLTEAERHKAEAEVIKE 890
DG C + +A+ NYF L+ + P NT + V ++T+ V +
Sbjct: 558 DGDICRGDENIAKVAINYFDDLYKSTP-NTSLRYADVFQGFQQKITDEINEDLIRPVTEL 616
Query: 891 EVFQALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVL 950
E+ +++ + PDGF F++++W + + V FE +D+ T + L
Sbjct: 617 EIEESVFSVAPSRTPDPDGFTADFYQQFWPDIKQKVIDEVTRFFERSELDERHNHTNLCL 676
Query: 951 IPKVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAF 1010
IPKV++P+T+ +FRPI+LCNV YK+I+K++VNR++ L I Q +F+PG I +NA
Sbjct: 677 IPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAITENQAAFVPGRLITNNAI 736
Query: 1011 LAQEIIHHMGASMAKKGT-LAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVS 1069
+A E+ + + A + + +A K D+ KAYD + W FLE+T+ Q GF + ++ IM CV+
Sbjct: 737 IAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQMGFNTKWIERIMICVT 796
Query: 1070 GSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLCS 1106
S+L NGS + KP RG+R GDPLSPYLF+LC+
Sbjct: 797 MVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCA 833
Score = 149 bits (376), Expect = 1e-35
Identities = 148/579 (25%), Positives = 231/579 (39%), Gaps = 81/579 (13%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
K K W L+ G+ L K+V A+P Y+M +F L + + +I+ + RF W +
Sbjct: 931 KDKTQGWSKKFLSQGGKEVLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGNE 990
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
+G H WK ++ PK+ GGL K++ +FN +LLGK W L + + L +VL +Y
Sbjct: 991 TKGMHWFTWKRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPE 1050
Query: 1350 ESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDGS-SSVWYHDWTGKGKLAESLDFV 1408
++ + + AS +W+ IL R+ L++G + +GDGS + W W
Sbjct: 1051 TNVMNAVQGRRASFVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPW------------- 1097
Query: 1409 HISDTKLCLHE-----LVDNNQWNLNRCMTVFPLHIRDWFARVEPRVVANGIDRWSWKDN 1463
L LH ++ L C T RD D W
Sbjct: 1098 ------LPLHSPRAPYKQEDAPEQLLVCSTA-----RD--------------DLIGWHYT 1132
Query: 1464 SDGISSVHDGYQWLR--------EKKMAGVVHGDSWLWI*KLHAPEKL*VFIWLVLHDAL 1515
DG+ +V Y WL G + LW K K+ F W +L A+
Sbjct: 1133 KDGMYTVKSAY-WLATHLPGTTGTHPPPGDIKLKQLLW--KTKTAPKIKHFCWKILSGAI 1189
Query: 1516 PTNAN-RYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWGKLG----AWGWSTFRLP 1570
T RYR + C RC EE + H +C +++ W G + S L
Sbjct: 1190 ATGEMLRYR-HINKQSICKRCCRDEETSQHLFFECDYAKATWRGAGLPNLIFQDSIVTLE 1248
Query: 1571 DLKA*VKTQLQGSNNIRFLAGLWGVWK-WRNNVVL----DPLPWTLDG--------AWQK 1617
+ + T + N W +W+ WR+ +L +PW + WQ
Sbjct: 1249 EKFRAMFTFNPSTTNYWRQLPFWILWRLWRSRNILTFQQKHIPWEVTVQLAKQDALEWQD 1308
Query: 1618 LRHDHDELLQFSSGDLLDEHHFLINLWKPPPPEFVKLNTDGSFQDTASSMGGGGLIRDAK 1677
+ D + + + + N W P + K N DGS+ +S G +IRD
Sbjct: 1309 I---EDRVQVINPLSRRHSNRYAANRWTRPVCGWKKCNYDGSYSTIINSK-AGWVIRDEH 1364
Query: 1678 GAWLGGFMSHTSIGNPFLAEVL-ALRDGLCLAWVQGHRRIIREVDCAGLSDILRFEDRCR 1736
G ++GG + N L L AL + W GH ++ E D + IL E + R
Sbjct: 1365 GQFIGGGQAKGKHTNNALESALQALIIAMQSCWSHGHTKVCFEGDNIEVYQILN-EGKAR 1423
Query: 1737 LHDHAGVLQEIRELMERPWRCSVHWTNRDSNASADFLAR 1775
D +++I+ R C W NR +N AD LA+
Sbjct: 1424 F-DVYNWIRDIQAWKRRFQECRFLWINRRNNKPADTLAK 1461
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 293 bits (751), Expect = 5e-79
Identities = 186/575 (32%), Positives = 302/575 (52%), Gaps = 41/575 (7%)
Query: 550 WRENLSWVCSAIYASPIPV-KREELWSHLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*F 608
W+EN+ + A+P + R W + + + W++ GD N+IL +E +GG
Sbjct: 38 WKENVE--VEILEAAPNFIDNRSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGG-- 93
Query: 609 LPTRAS----RFAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAF 664
P R F + + G+ D+ +G +W + + I S RLDRA+G+ +W F
Sbjct: 94 -PLRWEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFIKS-RLDRALGNCSWSELF 151
Query: 665 PEASVEALHRIHSDHCPLLINCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWT-GETE 723
P + E L SDH PL+ P + +PFRF E + + +V+ W +
Sbjct: 152 PMSKCEYLRFEGSDHRPLVTYFGAPPL-KRSKPFRFDRRLREKEEIRALVKEVWELARQD 210
Query: 724 TVAGKLNKVRTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMT------RLE 777
+V K+++ R K+ KE + + ++ Q+ L ++ D+ +
Sbjct: 211 SVLYKISRCRQSIIKWTKEQNSNSAKA-------IKKAQQALESALSADIPDPSLIGSIT 263
Query: 778 TELQAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSW 837
EL+A YR QEEL W Q +R + DRN YFHA T RR N + ++ G
Sbjct: 264 QELEAAYR----QEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQE 319
Query: 838 CDDRQLLAEEIQNYFQSLFAADPDNTDVNM-QHVMMPRLTEAERHKAEAEVIKE----EV 892
+ + +A I +YFQ++F +N+D+ + Q + P ++ E+IK E+
Sbjct: 320 FHEEEQIASTISSYFQNIFTTS-NNSDLQVVQEALSPIISS----HCNEELIKISSLLEI 374
Query: 893 FQALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIP 952
+AL + + A GPDGF FF YW+++ D+ + +R F + L ET + LIP
Sbjct: 375 KEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIP 434
Query: 953 KVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLA 1012
K+ +P V ++RPI+LCNV YK++ K++ R++P L+ +I Q++F+PG I DN +
Sbjct: 435 KISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLIT 494
Query: 1013 QEIIHHMGASMAKK-GTLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGS 1071
EI+H + S AKK ++A K D+ KAYD + W FL++ L++ GF ++ ++ +M+CV
Sbjct: 495 HEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTV 554
Query: 1072 NLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLCS 1106
+ S L NGS S P RGLR+GDPLSPYLF+LC+
Sbjct: 555 SYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCT 589
Score = 135 bits (339), Expect = 3e-31
Identities = 140/570 (24%), Positives = 228/570 (39%), Gaps = 47/570 (8%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
+++ SW L+ G+ L K+V+S++P+Y M F LP S+ +I + RF W
Sbjct: 714 RQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPD 773
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
+R V+W LT P GGL ++ + K+ W + L +VL KY +
Sbjct: 774 KRKMAWVSWDKLTLPINEGGLGFRE-------IEAKLSWRILKEPHSLLSRVLLGKYCNT 826
Query: 1350 ESIFSVHRRAN-ASPIWQGILKARDQLQEGFQFRMGDGSS-SVWYHDWTGKGKLAESLDF 1407
S + AS W+GIL RD L++G + +G G S +VW W +
Sbjct: 827 SSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGP 886
Query: 1408 VHISDTKLCLHELV--DNNQWNLNRCMTVFPLHIRDWFARVEPRVVANGI---DRWSWKD 1462
++ L +H+L+ D WN+ H+ + ++ ++ N + D W
Sbjct: 887 PTETNKDLSVHDLICHDVKSWNVE----AIRKHLPQYEDQIR-KITINALPLQDSLVWLP 941
Query: 1463 NSDGISSVHDGYQWLREKKMAGVVHGDSW---LWI*KLHAPEKL*VFIWLVLHDALPTNA 1519
G + GY + +W +W K+H K+ F+W + ALP
Sbjct: 942 VKSGEYTTKTGYALAKLNSFPASQLDFNWQKNIW--KIHTSPKVKHFLWKAMKGALPVGE 999
Query: 1520 NRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELW--------GKLGAWGWSTFRLPD 1571
R + C RC E ++H + CP+++++W L D
Sbjct: 1000 ALSRRNIEAEVTCKRCGQ-TESSLHLMLLCPYAKKVWELAPVLFNPSEATHSSVALLLVD 1058
Query: 1572 LKA*VKTQLQGSNNIRFLAG-LWGVWKWRNNVVLDPLPWTLDGAWQKLRHDHDELLQFSS 1630
K V G + LW +WK RN ++ D + +G K D ++
Sbjct: 1059 AKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWME--- 1115
Query: 1631 GDLLDEHHFLINLWKPPPPEFVKLNTDGSFQDTASSMGG----GGLIRDAKGAWLGGFMS 1686
LL H I+ + P P L F D A + G G ++D + S
Sbjct: 1116 AQLLIHHPSPISDYPSPTP---NLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKIKENQS 1172
Query: 1687 HTS-IGNPFLAEVLALRDGLCLAWVQGHRRIIREVDCAGLSDILRFEDRCRLHDHAGVLQ 1745
+S +G+ +AE LA+ L A G R++ DC L +L + + G+L
Sbjct: 1173 SSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLL--NSGKSIVELRGLLH 1230
Query: 1746 EIRELMERPWRCSVHWTNRDSNASADFLAR 1775
+IREL + R SN AD LA+
Sbjct: 1231 DIRELSVSFTHLCFFFIPRLSNVVADSLAK 1260
>At3g30570 putative reverse transcriptase
Length = 1099
Score = 290 bits (743), Expect = 4e-78
Identities = 200/628 (31%), Positives = 305/628 (47%), Gaps = 63/628 (10%)
Query: 489 LLETRCQFSRASNFWNSTRFSPLFISEANGFSGGIWVLVNTATNLSSRLLYSHQQAVTFE 548
+ ET +A F F +A G SGG+WVL T + +++Q +
Sbjct: 83 VFETHAGGDKAGRICQGLDFENSFWVDAEGQSGGLWVLWRTCIGDVVIVEFAYQ-FIHAR 141
Query: 549 VWRENLSWVCSAIYASPIPVKREELWSHLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*F 608
V + + +YA P P +R +LW L + + P +I D N I+ +E GG
Sbjct: 142 VVNGDAAVDLIVVYAPPTPSRRSKLWDTLSAVIRGVKGPVIIGEDFNMIVRVDERSGGSG 201
Query: 609 -LPTRASRFAAILEGCGMVDLGMSGGRYTWFRKQNNRL---------IMSKRLDRAMGDG 658
L + F + ++ TW + N + ++KRLDR +
Sbjct: 202 PLSPDSIAFGEWINDSSLL---------TWVSRVTNSVGSGSVRRDFFVAKRLDRVLCCS 252
Query: 659 AWRIAFPEASVEALHRIHSDHCPLLINCS-GPEIVHHDRPFRFLASWVEHPQYKEVVQSA 717
R+ + EA++ L + SDH PL + + G RPFRF A+W+ HP +KE++ ++
Sbjct: 253 HARLKWQEATLTHLPFLASDHAPLYLQLALGVGKNRFRRPFRFEAAWLSHPGFKELLLAS 312
Query: 718 WTGETETVAGKLNKVRTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLE 777
W G T L ++T K+NKEV+G I ++K + ++ VQ L T D+ R E
Sbjct: 313 WKGNIPTPEA-LKGIQTTLRKWNKEVFGDIQEKKEKLMVEIKTVQDSLYSNQTDDLLRRE 371
Query: 778 TELQAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSW 837
+EL E+ +L QEE LW K+RE DRNT++FH TIIRR+ N+I LK G W
Sbjct: 372 SELIIEFDVVLEQEETLWLHKSREKWFVQGDRNTSFFHTSTIIRRRHNRIEMLKNEKGGW 431
Query: 838 CDDRQLLAEEIQNYFQSLFAADPDNTDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALL 897
+ L + +Y++ L++ D + D ++ + R + E ++ + F A
Sbjct: 432 ISNTNELEKLAIDYYKRLYSLD--DVDEVVERLPAGRFLGLNQ---EEQIRLNKPFSA-- 484
Query: 898 RMRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSP 957
M SAL + + V D F +G + + ++VLI KV P
Sbjct: 485 -MEVESAL-------------------KITRFVLDFFLSGNLPQETNDAMVVLIAKVGKP 524
Query: 958 STVKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIH 1017
+ +FRPISLCNV+ ++IT +V R++ ++ ++IGP Q SF+PG DN + +E +H
Sbjct: 525 EKITQFRPISLCNVLLEIITNTMVERLKSVITKLIGPSQTSFIPGRLSTDNIEIVEEDVH 584
Query: 1018 HMGASMAKKGTLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLW 1077
M KG + K DLEKAYD V W FLEDTL G ++S+LW
Sbjct: 585 SMRCKKGHKGCMLLKFDLEKAYDRVRWDFLEDTL--------------EIAEGPSMSLLW 630
Query: 1078 NGSRLPSFKPGRGLRKGDPLSPYLFVLC 1105
NG + FK +GLR+GD LS YLFVLC
Sbjct: 631 NGEQKELFKARQGLRQGDLLSLYLFVLC 658
Score = 43.1 bits (100), Expect = 0.001
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 1304 PKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG--ESIFSVHRRANA 1361
PK G L I+ + N +L+ K+ W + ++ S L VQV+ KY G + + ++N
Sbjct: 785 PKWDGDLGIQFAKEMNIALIAKIGWRVLHDISSLLVQVVRKKYKVGLIQDQSWMVAKSNW 844
Query: 1362 SPIWQGI-LKARDQLQEGFQFRMGDGSS-SVWYHDWTGKGKLAESLDFVHISDTKLCLHE 1419
S W+ + + R+ + G+ + +GDG W W L + + I D +
Sbjct: 845 SSTWRSVGIGIREVVYPGYSWVIGDGRQIRFWRDKWLSSTPLLDEV----IGDLQEGYES 900
Query: 1420 LVDNNQWN 1427
+ ++ WN
Sbjct: 901 QMAHDLWN 908
Score = 32.3 bits (72), Expect = 2.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 1644 WKPPPPEFVKLNTDGSFQDTASSMGGGGLIRDAKGAWLGGFMSHTSIGNPFLAEVLALRD 1703
W+ P + KLN DG+ + GG +RD+ G +G T +G+ F +D
Sbjct: 1021 WRVPSAGWYKLNMDGASRGNPGLAAAGGALRDSNGE-IGETGHTTKVGSRFRDGGRVYKD 1079
Query: 1704 G 1704
G
Sbjct: 1080 G 1080
>At1g25430 hypothetical protein
Length = 1213
Score = 257 bits (657), Expect = 4e-68
Identities = 186/670 (27%), Positives = 326/670 (47%), Gaps = 34/670 (5%)
Query: 458 IISWNVRGALNEHGQLFLKDLIRCKKPDIMFLLETRCQFSRASNFWNSTRFSPLFISEAN 517
+ WN+RG N + K ++ KP ++ET + + F N+ F+ E
Sbjct: 5 LFCWNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFV-ENY 63
Query: 518 GFS--GGIWVLVNTATNLSSRLLYSHQQAVTFEVWRENL-SWVC-SAIYASPIPVKREEL 573
FS G IWV+ + + + ++ Q +T EV SW+ S +YA+ R+EL
Sbjct: 64 AFSDLGKIWVMWDPSVQVV--VVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKEL 121
Query: 574 WSHLLHIRSNLVL---PWMIVGDMNEILHPNEVRGG*FLPTRASR--FAAILEGCGMVDL 628
W ++++ + ++ PW+++GD N++L+P E L + F L + DL
Sbjct: 122 WIEIVNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDL 181
Query: 629 GMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDH--CPLLINC 686
G +TW+ K + + +K++DR + + +W FP + SDH C +++
Sbjct: 182 RYKGNTFTWWNKSHTTPV-AKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEE 240
Query: 687 SGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWT------GETETVAGKLNKVRTKSCKFN 740
+ + RPF+F +++ + +V+ W V+ KL ++ F+
Sbjct: 241 TS---IKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFS 297
Query: 741 KEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKAR 800
+ Y + +R + L G Q T E E + ++ L EE + QK+R
Sbjct: 298 RLNYSELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERKWHILTAAEESFFRQKSR 357
Query: 801 ENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADP 860
+ D NT YFH R N I L +G D ++ + + +YF SL +
Sbjct: 358 ISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDEV 417
Query: 861 D-----NTDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFF 915
D D+N+ ++ R + A+ + E+ E++ AL + + GPDGF FF
Sbjct: 418 DPYLMEQNDMNL--LLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFF 475
Query: 916 KKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKL 975
W +VG ++ +++ F +G + T IVLIPK+ +P+ +FRPIS N +YK+
Sbjct: 476 IDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKV 535
Query: 976 ITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIH-HMGASMAKKGTLAFKID 1034
I +++ +R++ LL+ +I Q++FLPG + +N LA +++H + ++++ +G L K+D
Sbjct: 536 IARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGML--KVD 593
Query: 1035 LEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKG 1094
L+KA+DSV W F+ L P + + I +C+S ++ NG FK +GLR+G
Sbjct: 594 LKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQG 653
Query: 1095 DPLSPYLFVL 1104
DPLSPYLFVL
Sbjct: 654 DPLSPYLFVL 663
Score = 97.8 bits (242), Expect = 5e-20
Identities = 80/331 (24%), Positives = 126/331 (37%), Gaps = 8/331 (2%)
Query: 1232 KLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSGQR 1291
+ SW L+ G++ L SVI + M F LP+ +I RF+W N Q
Sbjct: 789 RFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQA 848
Query: 1292 GWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHGES 1351
+V+W L PK GGL ++ + ++N +L +++W L LW +L S
Sbjct: 849 KGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGS 908
Query: 1352 IFSVHRRANASPIWQGILKARDQLQEGFQFRMGDG-SSSVWYHDWTGKGKLAESLDFVHI 1410
++V + S W+ +L R + ++G+G + WY +WT G L + +
Sbjct: 909 FWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGP 968
Query: 1411 SDTKLCLHELV----DNNQWNLNRCMTVFPLHIRDWFARVE-PRVVANGIDRWSWKDNSD 1465
S ++ L V + W L + I D V P +DR+ W N
Sbjct: 969 SSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGF 1028
Query: 1466 GISSVHDGYQWLREKKMAGVVHGDSWLWI*KLHAPEKL*VFIWLVLHDALPTNANRYRCK 1525
W + A V S +W A K +W+ + L T
Sbjct: 1029 LCQGFSAAKTWEAIRPKATVKSWASSIWF--KGAVPKYAFNMWVSHLNRLLTRQRLASWG 1086
Query: 1526 LAVSPGCTRCSSPEEDTIHCLRDCPHSQELW 1556
S C CS E H L C S ++W
Sbjct: 1087 HIQSDACVLCSFASESRDHLLLICEFSAQVW 1117
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 251 bits (640), Expect = 4e-66
Identities = 164/521 (31%), Positives = 263/521 (50%), Gaps = 20/521 (3%)
Query: 594 MNEILHPNEVRGG*FLPTRASR----FAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSK 649
+NEIL +E RGG P R F + + G+ DL SG ++W R + +
Sbjct: 35 VNEILDNSEKRGG---PPRDQGSFIDFRSFISKNGLWDLKYSGNPFSW-RGMRYDWFVRQ 90
Query: 650 RLDRAMGDGAWRIAFPEASVEALHRIHSDHCPLLINCSGPEIVHHDRPFRFLASWVEHPQ 709
RLDRAM + +W +FP E L SDH PL++ + + FRF ++
Sbjct: 91 RLDRAMSNNSWLESFPSGRSEYLRFEGSDHRPLVVFVDEARVKRRGQ-FRFDNRLRDNDV 149
Query: 710 YKEVVQSAWTGETE-TVAGKLNKVRTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYR 768
++Q WT + +V K+N+ R + + + Q E + Q+ L
Sbjct: 150 VNALIQETWTNAGDASVLTKMNQCRREIINWTR------LQNLNSAE-LIEKTQKALEEA 202
Query: 769 VTFDMTRLET--ELQAEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNK 826
+T D T L A + EE W Q++R + DRNT YFHA T RR +N+
Sbjct: 203 LTADPPNPTTIGALTATLEHAYKLEEQFWKQRSRVLWLHSGDRNTGYFHAVTRNRRTQNR 262
Query: 827 IHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADPDNTDVNMQHVMMPRLTEAERHKAEAE 886
+ ++ +G + +++ I YFQ +F ++ D + + P +++ +
Sbjct: 263 LTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRI 322
Query: 887 VIKEEVFQALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLET 946
EEV A+ + + A GPDGF F+ YW ++ D+ + +R F + + ET
Sbjct: 323 PNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNET 382
Query: 947 LIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIM 1006
I LIPK P V ++RPI+LCN+ YK++ K++ R++ +L ++I Q++F+PG I
Sbjct: 383 HIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVIS 442
Query: 1007 DNAFLAQEIIHHMGASMAKKG-TLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIM 1065
DN + E++H + S AKK ++A K D+ KAYD V W FL+ L +FGF + + ++
Sbjct: 443 DNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVL 502
Query: 1066 RCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLCS 1106
CV+ + S L NG+ P RGLR+GDPLSP LF+LC+
Sbjct: 503 ECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCT 543
Score = 134 bits (338), Expect = 4e-31
Identities = 136/571 (23%), Positives = 230/571 (39%), Gaps = 54/571 (9%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
++K SW + L+ G+ + K+V++++P Y+M F LP ++ KI + RF W
Sbjct: 668 RQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPD 727
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
R V W LT PK GGL +D+ N SLL K+ W L N+ L ++L KY H
Sbjct: 728 VRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHS 787
Query: 1350 ESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDGSS-SVWYHDWTGKGKLAESLDFV 1408
S + S W+ I+ R+ L+EG + + +G S+W W K +
Sbjct: 788 SSFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPA 847
Query: 1409 HISDTKLCLHELVDNN--QWNLNRCMTVFPLHIRDWFARVEPRVVANGIDRWSWKDNSDG 1466
L + L++ N QW+ N+ + P + + + P + G+D+ +W G
Sbjct: 848 LREHQDLRVSALINQNTLQWDWNKIAVILPNY--ENLIKQLPAPSSRGVDKLAWLPVKSG 905
Query: 1467 ISSVHDGYQWLREKKMAGVVHGDSW---LWI*KLHAPEKL*VFIWLVLHDALPTNANRYR 1523
+ GY + +W LW KL K+ +W +ALP R
Sbjct: 906 QYTSRSGYGIASVASIPIPQTQFNWQSNLW--KLQTLPKIKHLMWKAAMEALPVGIQLVR 963
Query: 1524 CKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWGKLGAWGWSTF--------RLPDLKA* 1575
++ S C RC +P E T H C + ++W +L +T L LK
Sbjct: 964 RHISPSAACHRCGAP-ESTTHLFFHCEFAAQVW-ELAPLQETTVPPGSSMLDALSLLKKA 1021
Query: 1576 V---KTQLQGSNNIRFLAGLWGVWKWRNNVVLDPLPWTLDGAWQKLRHDHDELLQFSSGD 1632
+ T + + ++ G++G +LD L W A + L + + S
Sbjct: 1022 IILPPTGVTSAALFPWICGIYGKLGTMTRAILDALAW--QSAQRCLPKTRNVVHPISQLP 1079
Query: 1633 LLDEHHFLINLWKPPPPEFVKLNTDGSFQDTA----SSMGGGGLIRDAKGAWLGGFMSHT 1688
+L +F F D A SS+ G G + + A +++
Sbjct: 1080 VLRSGYF-------------------CFVDAAWIAQSSLAGSGWVFQSATALEKETATYS 1120
Query: 1689 S----IGNPFLAEVLALRDGLCLAWVQGHRRIIREVDCAGLSDILRFEDRCRLHDHAGVL 1744
+ + + AE A++ L A G ++ D + D L +++ G+L
Sbjct: 1121 AGCRRLPSALSAEAWAIKSALLHALQLGRTDLMVLSDSKSVVDAL--TSNISINEIYGLL 1178
Query: 1745 QEIRELMERPWRCSVHWTNRDSNASADFLAR 1775
EIR L ++ +R +NA AD A+
Sbjct: 1179 MEIRALRVSFHSLCFNFISRSANAIADATAK 1209
>At1g31100 hypothetical protein
Length = 1090
Score = 246 bits (628), Expect = 9e-65
Identities = 171/572 (29%), Positives = 285/572 (48%), Gaps = 29/572 (5%)
Query: 555 SWVCSAIYASPIPVKREELWSHLLHIRSNLV---LPWMIVGDMNEILHPNEVRGG*FLPT 611
S V S +YA+ + R+ELW LL + +L PW+++GD N++L P E L
Sbjct: 14 SVVVSIVYAANEAITRKELWEELLLLSVSLSGNGKPWIMLGDFNQVLCPAEHSQATSLNV 73
Query: 612 --RASRFAAILEGCGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASV 669
R F L + DL G +TW+ K R + +K+LDR + + +W FP A
Sbjct: 74 NRRMKVFRDCLFEAELCDLVFKGNTFTWWNKSATRPV-AKKLDRILVNESWCSRFPSAYA 132
Query: 670 EALHRIHSDH--CPLLINCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWTGETET--- 724
SDH C ++IN P + RPFRF +++P + +V W
Sbjct: 133 VFGEPDFSDHASCGVIIN---PLMHREKRPFRFYNFLLQNPDFISLVGELWYSINVVGSS 189
Query: 725 ---VAGKLNKVRTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQ 781
++ KL ++ F+ E + ++ +R + + Q + T LE E Q
Sbjct: 190 MFKMSKKLKALKNPIRTFSMENFSNLEKRVKEAHNLVLYRQNKTLSDPTIPNAALEMEAQ 249
Query: 782 AEYRFLLRQEELLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDR 841
++ L++ EE + Q++R + D NT+YFH R+ N IH + ++G D +
Sbjct: 250 RKWLILVKAEESFFCQRSRVTWMGEGDSNTSYFHRMADSRKAVNTIHIIIDDNGVKIDTQ 309
Query: 842 QLLAEEIQNYFQSLFAAD---PDNTDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALLR 898
+ E YF +L + P + ++ R + ++ + ++++ A
Sbjct: 310 LGIKEHCIEYFSNLLGGEVGPPMLIQEDFDLLLPFRCSHDQKKELAMSFSRQDIKSAFFS 369
Query: 899 MRSYSALGPDGFHPFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPS 958
S GPDGF FFK+ W ++G ++ V + F + ++ T +VLIPK+ + S
Sbjct: 370 FPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLVLIPKITNAS 429
Query: 959 TVKEFRPISLCN-----VVYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQ 1013
+ +FRPIS CN +YK+I +++ NR++ LL+++I P Q++FLPG + +N LA
Sbjct: 430 KMNDFRPIS-CNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFLAENVLLAT 488
Query: 1014 EIIH-HMGASMAKKGTLAFKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSN 1072
E++ + ++ +G L K+DL KA+DS+ W F+ L G P+R V I +C+S
Sbjct: 489 ELVQGYNRQNIDPRGML--KVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPT 546
Query: 1073 LSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVL 1104
S+ NG+ FK RGLR+G+PLSP+LFVL
Sbjct: 547 FSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVL 578
Score = 65.9 bits (159), Expect = 2e-10
Identities = 84/394 (21%), Positives = 134/394 (33%), Gaps = 48/394 (12%)
Query: 1231 KKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSGQ 1290
K+ SW L+ G+V L SVIS I + + F LP+ +I RF+W N
Sbjct: 683 KRFRSWSVKCLSFAGRVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLWSGNIDV 742
Query: 1291 RGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHGE 1350
+ +V W + PKE GG + LW +
Sbjct: 743 KKGAKVAWSEVCLPKEEGGSG-----------------YYFSEKESLWAAWHKFHNFRNK 785
Query: 1351 SIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDGSS-SVWYHDWTGKGKLAESLDFVH 1409
S + + A S W+ +L+ R +GDG S W+ +W+ G L + F
Sbjct: 786 SFWEIDESATDSWTWRSLLRLRTVAGRFLFSVLGDGKKISFWFDNWSPLGPLFKL--FGS 843
Query: 1410 ISDTKLCL------HELVDNNQWNLNRCMTVFPLHIRDWFARVEPRVVANGIDRWSWKDN 1463
LC+ + + W ++ T L + + + D + W +
Sbjct: 844 SGPRALCIPIQAKVADACSDVGWLISPPRTDQALALLIHLTTIALPCFDSSPDTFVWIVD 903
Query: 1464 SDGISSVHDGYQWLREKKMAGVVHGDSWLWI*KLHAPEKL*VFIWLVLHDALPTNANRYR 1523
W + V +W K P+ +W+ + LPT
Sbjct: 904 DFTCHGFSAARTWEAMRPKKPVKDWTKSVWF-KGSVPKHA-FNMWVSHLNRLPTRQRLAA 961
Query: 1524 CKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWGKLGAWGWSTFRLPDLKA*VK------ 1577
+ + C CSS E H L C S +W + FRL +A
Sbjct: 962 WGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLV------FFRLTPSQAIFNSWAELL 1015
Query: 1578 --TQLQGS------NNIRFLAGLWGVWKWRNNVV 1603
T++ S I A ++ +WK RNNV+
Sbjct: 1016 SWTRINSSKAPSLLRKIAAQASVFHLWKQRNNVL 1049
>At4g26360 putative protein
Length = 1141
Score = 243 bits (621), Expect = 6e-64
Identities = 183/614 (29%), Positives = 299/614 (47%), Gaps = 43/614 (7%)
Query: 512 FISEANGFS--GGIWVLVNTATNLSSRLLYSHQQAVTFEVWRENL-SW-VCSAIYASPIP 567
F E GFS G IWVL + + + ++ Q +T EV N +W V S +YA+
Sbjct: 50 FFDENYGFSDLGKIWVLWDPSVEVV--IVAKSLQMITCEVLFPNSRTWIVISVVYAANED 107
Query: 568 VKREELWSHLLHIRSNLVL---PWMIVGDMNEILHPNEVRGG*FLPT--RASRFAAILEG 622
KR+ELW + + ++ V PW+++GD N++LHP+E L R F L
Sbjct: 108 DKRKELWREITALVASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLD 167
Query: 623 CGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDH--C 680
+ DL G +TW+ K R + +K++DR + + +W FP + SDH C
Sbjct: 168 AELSDLVYKGSSFTWWNKSKTRPV-AKKIDRILVNESWSNLFPSSFGLFGPPDFSDHASC 226
Query: 681 PLLINCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWTGETET------VAGKLNKVRT 734
+++ + + RPF+F +++P++ +V W V+ KL ++
Sbjct: 227 GVVLEL---DPIKAKRPFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRVSKKLKALKK 283
Query: 735 KSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELL 794
F++ Y ++ +R L Q + + E E Q +++ L EE
Sbjct: 284 PIKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPSLENAAHELEAQRKWQILATAEESF 343
Query: 795 WFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQS 854
+ Q++R D NT YFH R+ N I L + G+ D +Q +A+ YF++
Sbjct: 344 FRQRSRVTWFAEGDGNTRYFHRMADSRKSVNTITTLVDDSGTQIDSQQGIADHCALYFEN 403
Query: 855 LFAADPDNTDV---NMQHVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFH 911
L + D D + +M ++ R ++ EA E++ A + S A GPDGF
Sbjct: 404 LLSDDNDPYSLEQDDMNLLLTYRCPYSQVADLEAMFSDEDIKAAFFGLPSNKACGPDGF- 462
Query: 912 PFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNV 971
+ VR+ F +G + T IVLIPK + S +FRPIS N
Sbjct: 463 -------------PVTAAVREFFISGNLLKQWNATTIVLIPKFPNASCTSDFRPISCMNT 509
Query: 972 VYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIH-HMGASMAKKGTLA 1030
+YK+I +++ +R++ LL+ +I P Q++FLPG + +N LA E++H + +++ +G L
Sbjct: 510 LYKVIARLLTDRLQKLLSCVISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGML- 568
Query: 1031 FKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRG 1090
K+DL KA+DSV W F+ L+ G P + + I +C+S ++ NG FK +G
Sbjct: 569 -KVDLRKAFDSVRWEFIIAALLALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKG 627
Query: 1091 LRKGDPLSPYLFVL 1104
LR+GDPLSPYLFVL
Sbjct: 628 LRQGDPLSPYLFVL 641
>At2g01550 putative non-LTR retroelement reverse transcriptase
Length = 1449
Score = 233 bits (593), Expect = 1e-60
Identities = 166/593 (27%), Positives = 286/593 (47%), Gaps = 29/593 (4%)
Query: 521 GGIWVLVNTATNLSSRLLYSHQQAVTFEVWRENLS--WVCSAIYASPIPVKREELWSHLL 578
G +WV+ N+ Y Q +T V E+ + S +YAS +R+ LW+ L
Sbjct: 482 GRLWVVWRE--NVRFTPFYKSDQLITCSVKLESQEEEFFYSFVYASNFAEERKILWNDLR 539
Query: 579 -HIRSNLVL--PWMIVGDMNEILHPNEVRGG*FLPTRASR---FAAILEGCGMVDLGMSG 632
H+ S ++ PW+I GD NEIL +E P S F +++ C DL G
Sbjct: 540 DHMDSPIIRDKPWIIFGDFNEILDMDEHSRMEDHPAVTSGMRDFQSLVNYCSFSDLASHG 599
Query: 633 GRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDH--CPLLINCSGPE 690
+TW K++N I K+LDR M + AW++ +P++ SDH C + +N +
Sbjct: 600 PLFTWCNKRDNDPIW-KKLDRVMVNEAWKMVYPQSYNVFEAGGCSDHLRCRINLNMNSGA 658
Query: 691 IVHHDRPFRFLASWVEHPQYKEVVQSAWTGETETV----------AGKLNKVRTKSCKFN 740
V ++PF+F+ + + ++K +V++ W ETE + KL ++ K
Sbjct: 659 QVRGNKPFKFVNAVADMEEFKPLVENFWR-ETEPIHMSTSSLFRFTKKLKALKPKLRGLA 717
Query: 741 KEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKAR 800
KE G++ +R R L Q+ + + +E+E + + EE Q ++
Sbjct: 718 KEKMGNLVKRTREAYLSLCQAQQSNSQNPSQRAMEIESEAYVRWDRIASIEEKYLKQVSK 777
Query: 801 ENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADP 860
+ + D+N FH R +N I ++ DGS + + E + +FQ P
Sbjct: 778 LHWLKVGDKNNKTFHRAATARAAQNSIREIQKEDGSTATTKDDIKNETERFFQEFLQLIP 837
Query: 861 DN----TDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFFK 916
++ T + ++ + AE+ A V +E+ AL M + + GPDG+ F+K
Sbjct: 838 NDYEGITVEKLTSLLPYHCSPAEKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYK 897
Query: 917 KYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLI 976
+ W+++G + V+ FE G + + T++ LIPK +K++RPIS CNV+YK+I
Sbjct: 898 RAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVI 957
Query: 977 TKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGASMAKKGTLAFKIDLE 1036
+K++ NR++ +L I Q++F+ +++N LA E++ G A KID+
Sbjct: 958 SKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTI-SGRCAIKIDIS 1016
Query: 1037 KAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGR 1089
KA+DSV W+FL++ L FP V +M CV+ ++ S+ NG F+ R
Sbjct: 1017 KAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTASFSVQVNGELAGYFQSSR 1069
Score = 57.8 bits (138), Expect = 6e-08
Identities = 57/243 (23%), Positives = 98/243 (39%), Gaps = 44/243 (18%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
KKK+ SW L+ G++ L SV+ +I + + F LPR +I++ F+W
Sbjct: 1073 KKKIGSWTARFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIREIDKLCSTFLWSGPDL 1132
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSL----------LGKVVWLLANNSSKL-- 1337
+V W + +PK+ GGL ++ + + N + G+ + ++ S L
Sbjct: 1133 NSHKAKVAWDDVCKPKKEGGLGLRSIKEANDDMAKQFCKKEVNTGRNTFFWYDDWSTLGR 1192
Query: 1338 WVQVLAHKYLHGESIFSVHRRANASPIWQGILKAR------DQLQEGF----QFRMGDGS 1387
V++ + G + R+ W G + R +Q++E Q R G+
Sbjct: 1193 LVEIAGDR---GTIDMGISRKMTLEEAWNGRRQRRHRDNVLNQMEEALELTRQRRNGNDD 1249
Query: 1388 SSVWYHDWTGKGKLAESLDFVHISDTKLCLHELVDNNQWNLNRCMTV-FPLHIRDWFARV 1446
++W KGK + D+ H TK WN R M + P H WF
Sbjct: 1250 VTLW------KGK---NDDYRHCFSTK---------ETWNNTRTMGIEVPWHKGVWFTHS 1291
Query: 1447 EPR 1449
P+
Sbjct: 1292 TPK 1294
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 227 bits (578), Expect = 5e-59
Identities = 166/599 (27%), Positives = 276/599 (45%), Gaps = 28/599 (4%)
Query: 515 EANGFSGGIWVLVNTATNLSSRLLYSHQQAVTFEVWRENLSWVCSAIYASPIPVKREELW 574
E G SGG+ + +L L+ + + +V + SW S +Y +P+ R L
Sbjct: 23 EPVGKSGGLAIFWKN--HLEIDFLFEDKNLLDLKVSQGKKSWFVSCVYGNPVLHLRYLLL 80
Query: 575 SHLLHIRSNLVLPWMIVGDMNEILHPNEVRGG*FLPTRA----SRFAAILEGCGMVDLGM 630
L I W ++GD N+IL + GG P+R F +L C M +G
Sbjct: 81 DKLSSIGVQRNSAWCMIGDFNDILSNDGKLGG---PSRLISSFQPFKNMLLNCDMHQMGS 137
Query: 631 SGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDHCPLLINCSGPE 690
SG +TW +N++ I K LDR G+ W F + L ++ S H P+L+N +
Sbjct: 138 SGNSFTWGGTRNDQWIQCK-LDRCFGNSEWFTMFSNSHQWFLEKLGSHHRPVLVNFVNDQ 196
Query: 691 IVHHDRPFRFLASWVEHPQYKEVVQSAWTGETETVAGKLNKVRTKSCKFNKEVYGSIFQR 750
V + F + + E PQ S+W G ++ + K K + G
Sbjct: 197 EVFRGQ-FCYDKRFAEDPQCAASTLSSWIGNG---ISDVSSSMLRMVKCRKAISGWKKNS 252
Query: 751 KRWVEGRLRGVQRELNYRVT--FDMTRLETELQAEYRFLLRQEELLWFQKARENRVCFDD 808
+ R+ ++ EL+ + + + +Q + R+EE W K+++ + D
Sbjct: 253 DFNAQNRILRLRSELDEEKSKQYPCWSRISVIQTQLGVAFREEESFWRLKSKDKWLFGGD 312
Query: 809 RNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADPDNTDVNMQ 868
RN+ +F A R +N + L +G+ + YF++LF + +
Sbjct: 313 RNSKFFQAMVKANRTKNSLRFLVDENGNEHTLNREKGNIASVYFENLFMSSYPANSQSAL 372
Query: 869 HVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFFKKYWELVGDDLWK 928
R++E + V + E+ A+ + SA P+ Y E++G
Sbjct: 373 DGFKTRVSEEMNQELTQAVTELEIHSAVFSINVESA--PEKLECCQGSDYIEILG----- 425
Query: 929 LVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVVNRIRPLL 988
FETG++ T + LIPK +P + + RPISLC+V+YK+I+K++ +++ L
Sbjct: 426 ----FFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHL 481
Query: 989 NRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGAS-MAKKGTLAFKIDLEKAYDSVSWAFL 1047
I+ P Q++F I DN +A EI+H + + K + FK D+ KAYD V W+FL
Sbjct: 482 PSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFL 541
Query: 1048 EDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPYLFVLCS 1106
++ LV GF ++ + IM CV+ S+L NG P RG+R+GDP+SP+LFVLC+
Sbjct: 542 QEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCT 600
Score = 141 bits (356), Expect = 3e-33
Identities = 117/472 (24%), Positives = 193/472 (40%), Gaps = 36/472 (7%)
Query: 1233 LSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSGQRG 1292
LS W L+ G+ L KS+ A+P Y M F LP+ + K+ M F W
Sbjct: 728 LSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNK 787
Query: 1293 WHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHGESI 1352
H + K LT PK GG KD+ FN +LL K W L ++S + Q+ +Y
Sbjct: 788 IHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDF 847
Query: 1353 FSVHRRANASPIWQGILKARDQLQEGFQFRMGDG-SSSVWYHDWTGKGKLAESLDFVHIS 1411
+ + S W+ IL R+ L G + +G+G ++VW W G ++ +
Sbjct: 848 LNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLM 907
Query: 1412 DTKLCLHELVD--NNQWNLNRCMTVFPLHIRDWFARVEPRVVANGIDRWSWKDNSDGISS 1469
+ + + L+D WNL + +F H +D + R + + D + W ++G+ +
Sbjct: 908 NIHMKVSHLIDPLTRNWNLKKLTELF--HEKDVQLIMHQRPLISSEDSYCWAGTNNGLYT 965
Query: 1470 VHDGYQWLREK------KMAGVVHGDSWLW--I*KLHAPEKL*VFIWLVLHDALPTNANR 1521
V GY+ + K A V + L+ + L K+ VF+W L AL
Sbjct: 966 VKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRL 1025
Query: 1522 YRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELWG----KLGAWGWSTFRLPDLKA*VK 1577
+ + GC C E H L CP ++++W + A G+ T + + +
Sbjct: 1026 RSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGT----SIFSNIN 1081
Query: 1578 TQLQGSNN------IRFLAG--LWGVWKWRNNVVLDPLPWTLDGAWQKLRHDHD---ELL 1626
+Q S N +R ++ LW +WK RN + T K + +
Sbjct: 1082 HVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQ 1141
Query: 1627 QFSSGDLLDEHHFLINLWKPPPPEFVKLNTDGSFQDTASSMGGGGLIRDAKG 1678
+ SSG + H W PPP +K N ++ G ++RD+ G
Sbjct: 1142 EKSSGGVSPSEH----KWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMG 1189
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 227 bits (578), Expect = 5e-59
Identities = 149/436 (34%), Positives = 220/436 (50%), Gaps = 13/436 (2%)
Query: 677 SDHCPLLINCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWTGETETVAG----KLNKV 732
SDH P++ + +I + FRF W+ E + W ++ G KL
Sbjct: 4 SDHSPVIATIAD-KIPRGKQNFRFDKRWIGKDGLLEAISQGWNLDSGFREGQFVEKLTNC 62
Query: 733 RTKSCKFNKEVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEE 792
R K+ K + Q ++ L QR+ + R ++T L L+ YR EE
Sbjct: 63 RRAISKWRKSLIPFGRQTIEDLKAELDVAQRD-DDRSREEITELTLRLKEAYR----DEE 117
Query: 793 LLWFQKARENRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYF 852
W+QK+R + D N+ +FHA T RR RN+I L +G W + + +YF
Sbjct: 118 QYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYF 177
Query: 853 QSLFA-ADPDNTDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFH 911
Q+LF A+P D + V + +T+ A+ + EV AL + A GPDG
Sbjct: 178 QNLFTTANPQVFDEALGEVQV-LITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMT 236
Query: 912 PFFFKKYWELVGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNV 971
FF+K W ++ DL LV + G+ D L T I LIPK + P+ + E RPISLCNV
Sbjct: 237 ALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNV 296
Query: 972 VYKLITKVVVNRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGA-SMAKKGTLA 1030
YK+I+K++ R++ +L +I Q++F+ G I DN +AQE+ H + S K +A
Sbjct: 297 GYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMA 356
Query: 1031 FKIDLEKAYDSVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRG 1090
K D+ KAYD V W F+E L + GF + + IM C++ +L NG P RG
Sbjct: 357 IKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERG 416
Query: 1091 LRKGDPLSPYLFVLCS 1106
LR+GDPLSPYLF+LC+
Sbjct: 417 LRQGDPLSPYLFILCT 432
Score = 135 bits (340), Expect = 2e-31
Identities = 89/337 (26%), Positives = 150/337 (44%), Gaps = 13/337 (3%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
+ +++ W L+ G+ + KSV + +P Y M F LP++I K+ + +F W N
Sbjct: 557 QSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGD 616
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
RG H + W L K GGL +++ DFN++LL K +W L L+ +V +Y
Sbjct: 617 SRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRK 676
Query: 1350 ESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDGSS-SVWYHDWTGKGKLAESLDFV 1408
+ + + S W+ ++ AR + +G R+G G+S SVW W +
Sbjct: 677 SNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGG 736
Query: 1409 HISDTKLCLHELVD--NNQWNLNRCMTVFPLHIRDWFARVEPRVVANGIDRWSWKDNSDG 1466
I D L + L+D +N WN++ +F + + P N D W G
Sbjct: 737 SIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISAL-PIGNPNMEDTLGWHFTKAG 795
Query: 1467 ISSVHDGYQWLREKKMAG--VVHGD-----SWLWI*KLHAPEKL*VFIWLVLHDALPTNA 1519
+V GY R G ++ D +++W K+ P KL F+W +L +P +
Sbjct: 796 NYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIW--KVQCPPKLRHFLWQILSGCVPVSE 853
Query: 1520 NRYRCKLAVSPGCTRCSSPEEDTIHCLRDCPHSQELW 1556
N + + GC C + EE H L C ++++W
Sbjct: 854 NLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW 890
>At2g11240 pseudogene
Length = 1044
Score = 222 bits (566), Expect = 1e-57
Identities = 142/486 (29%), Positives = 247/486 (50%), Gaps = 17/486 (3%)
Query: 623 CGMVDLGMSGGRYTWFRKQNNRLIMSKRLDRAMGDGAWRIAFPEASVEALHRIHSDHCPL 682
C + DL SG +W K+++ ++ RLDRA+ +GAW +P + L SDH PL
Sbjct: 4 CDLYDLRHSGNFLSWRGKRHDHVVHC-RLDRALSNGAWAEDYPASRCIYLCFEGSDHRPL 62
Query: 683 LINCSGPEIVHHDRPFRFLASWVEHPQYKEVVQSAWT-GETETVAGKLNKVRTKSCKFNK 741
L + + FR+ + + +VQ AW +T+ V K+++ R + K+++
Sbjct: 63 LTHFDLSK-KKKKGVFRYDRRLKNNDEVTALVQEAWNLYDTDIVEEKISRCRLEIVKWSR 121
Query: 742 EVYGSIFQRKRWVEGRLRGVQRELNYRVTFDMTRLETELQAEYRFLLRQEELLWFQKARE 801
S + +L ++ ++ + T L Y+ EE W Q++R+
Sbjct: 122 AKQQSSQKLIEENRQKLEEAMSSQDHNQEL-LSTINTNLLLAYK----AEEEYWKQRSRQ 176
Query: 802 NRVCFDDRNTAYFHAHTIIRRKRNKIHRLKLNDGSWCDDRQLLAEEIQNYFQSLFAADPD 861
+ D+N+ YFHA T R NK ++ DG + + I YFQ LF+A+
Sbjct: 177 LWLALGDKNSGYFHAITRGRTVINKFSVIEKEDGVPEYEEAGILNVISEYFQKLFSANEG 236
Query: 862 NTDVNMQHVMMPRLTEAERHKAEAEVIKEEVFQALLRMRSYSALGPDGFHPFFFKKYWEL 921
++ + P ++ + EE+ A + + A GPDGF FF+ W
Sbjct: 237 ARAATIKEAIKPFISPEQN--------PEEIKSACFSIHADKAPGPDGFSASFFQSNWMT 288
Query: 922 VGDDLWKLVRDAFETGMIDDSLLETLIVLIPKVDSPSTVKEFRPISLCNVVYKLITKVVV 981
VG ++ ++ F + + ++ +T I LIPK+ S + ++RPI+LC V YK+I+K++
Sbjct: 289 VGPNIVLEIQSFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLS 348
Query: 982 NRIRPLLNRIIGPMQNSFLPGMGIMDNAFLAQEIIHHMGASMAKKGT-LAFKIDLEKAYD 1040
R++P+L II Q++F+P DN + E +H++ + A+K +A K ++ KAYD
Sbjct: 349 RRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYD 408
Query: 1041 SVSWAFLEDTLVQFGFPNRLVQLIMRCVSGSNLSMLWNGSRLPSFKPGRGLRKGDPLSPY 1100
+ W F++ + + GF + I++C++ + S L NGS + P RGLR+GDPLSP+
Sbjct: 409 RIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPF 468
Query: 1101 LFVLCS 1106
LF++CS
Sbjct: 469 LFIICS 474
Score = 92.0 bits (227), Expect = 3e-18
Identities = 48/167 (28%), Positives = 86/167 (50%), Gaps = 1/167 (0%)
Query: 1230 KKKLSSWKTNLLNMVGQVCLAKSVISAIPTYTMQVFWLPRSINHKINQEMRRFIWLKNSG 1289
+++ SW + L+ G+ + KSV++++PTYTM F L S+ +I + F W ++
Sbjct: 599 RQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSAD 658
Query: 1290 QRGWHRVNWKTLTQPKEHGGLAIKDMGDFNTSLLGKVVWLLANNSSKLWVQVLAHKYLHG 1349
++ + W + + K+ GGL KD+ +FN +LL K+ W + + S + V++L KY
Sbjct: 659 KKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRT 718
Query: 1350 ESIFSVHRRANASPIWQGILKARDQLQEGFQFRMGDG-SSSVWYHDW 1395
S A +S W+GI +D ++ +G G + VW W
Sbjct: 719 SSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPW 765
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.333 0.144 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,598,282
Number of Sequences: 26719
Number of extensions: 1811886
Number of successful extensions: 5055
Number of sequences better than 10.0: 114
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 4459
Number of HSP's gapped (non-prelim): 275
length of query: 1813
length of database: 11,318,596
effective HSP length: 114
effective length of query: 1699
effective length of database: 8,272,630
effective search space: 14055198370
effective search space used: 14055198370
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0178.7