BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0177.9
         (113 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

rpoC2 -chloroplast genome- RNA polymerase beta' subunit-2             193  1e-50
At5g60040 DNA-directed RNA polymerase - like protein                   30  0.20
At2g39810 unknown protein                                              26  2.8
At1g69860 putative peptide transporter                                 26  2.8
At3g24530 unknown protein                                              25  4.8
At2g26080 putative glycine dehydrogenase                               25  6.3

>rpoC2 -chloroplast genome- RNA polymerase beta' subunit-2
          Length = 1376

 Score =  193 bits (491), Expect = 1e-50
 Identities = 100/112 (89%), Positives = 107/112 (95%)

Query: 2    QSRISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSLGELIGLLRAQ 61
            QSRISLVNKIQ+VYRSQGV IHNRHIEIIVRQITSKVLVSE+GMSNVF  GELIGLLRA+
Sbjct: 1191 QSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAE 1250

Query: 62   RTGRALEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGRID 113
            RTGRALEE+ICYR +LLGIT+ S+NTQSFISEASFQETARVLAKAALRGRID
Sbjct: 1251 RTGRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRID 1302


>At5g60040 DNA-directed RNA polymerase - like protein
          Length = 1328

 Score = 30.0 bits (66), Expect = 0.20
 Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 2/49 (4%)

Query: 67   LEESICYRTILLGITKTSMNT--QSFISEASFQETARVLAKAALRGRID 113
            L + + YR  +LGI +T +    +S + +ASF+ T   L  AA  G++D
Sbjct: 1237 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVD 1285


>At2g39810 unknown protein
          Length = 927

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 43  DGMSNVFSLGELIGLLRAQRTGRALEESICY-RTILLGITKTSM 85
           DG+S + S+GE +  LR +     L E+  Y RT+ L + + ++
Sbjct: 492 DGVSELVSIGEAVTALRVRVECGLLSEAFTYQRTLCLKVKENNL 535


>At1g69860 putative peptide transporter
          Length = 555

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 25  RHIEIIVRQITSKVLVSEDGMSNVFSLGELI--GLLRAQRTGRAL 67
           RHIE I +Q     L+ + G+ N+FS+  ++  G++  +R   +L
Sbjct: 390 RHIENITKQNGGISLLQKVGIGNIFSISTMLISGIVERKRRDLSL 434


>At3g24530 unknown protein
          Length = 481

 Score = 25.4 bits (54), Expect = 4.8
 Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 4/72 (5%)

Query: 36  SKVLVSEDGMSNVFSLGELIGLLRAQRTGRALEESICYRTILLGITKTSMNTQSFISEAS 95
           +K+ + ED +SN+  L EL   LR    G  L+E    R + L I        +F+    
Sbjct: 198 AKMELLEDELSNIVGLSELKTQLRKWAKGMLLDER--RRALGLNIGTRRPPHMAFLGNPG 255

Query: 96  FQET--ARVLAK 105
             +T  ARVL K
Sbjct: 256 TGKTMVARVLGK 267


>At2g26080 putative glycine dehydrogenase
          Length = 1044

 Score = 25.0 bits (53), Expect = 6.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 67  LEESICYRTILLGITKTSMNTQSFISEASFQETARVLAKAALRGR 111
           LE  + Y+T++  +T   M+  S + E +    A  +    L+G+
Sbjct: 197 LESLLNYQTVITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGK 241


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.134    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,803,582
Number of Sequences: 26719
Number of extensions: 56910
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 6
length of query: 113
length of database: 11,318,596
effective HSP length: 89
effective length of query: 24
effective length of database: 8,940,605
effective search space: 214574520
effective search space used: 214574520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)