BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0173b.7
         (1526 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g11970 hypothetical protein                                        211  2e-54
At1g36590 hypothetical protein                                        211  2e-54
At4g10580 putative reverse-transcriptase -like protein                210  6e-54
At2g10780 pseudogene                                                  208  2e-53
At2g04670 putative retroelement pol polyprotein                       206  6e-53
At2g06890 putative retroelement integrase                             195  1e-49
At2g07660 putative retroelement pol polyprotein                       188  2e-47
At1g35370 hypothetical protein                                        182  1e-45
At2g14650 putative retroelement pol polyprotein                       182  1e-45
At2g05610 putative retroelement pol polyprotein                       171  4e-42
At4g08100 putative polyprotein                                        157  6e-38
At4g03650 putative reverse transcriptase                              144  5e-34
At4g04230 putative transposon protein                                 121  3e-27
At1g20390 hypothetical protein                                        118  3e-26
At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein        110  8e-24
At2g10690 putative retroelement pol polyprotein                       106  1e-22
At4g07600                                                             104  4e-22
At2g15410 putative retroelement pol polyprotein                        99  1e-20
At1g36120 putative reverse transcriptase gb|AAD22339.1                 98  4e-20
At2g14400 putative retroelement pol polyprotein                        92  3e-18

>At3g11970 hypothetical protein
          Length = 1499

 Score =  211 bits (538), Expect = 2e-54
 Identities = 136/445 (30%), Positives = 224/445 (49%), Gaps = 20/445 (4%)

Query: 1082 FWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWS 1141
            F E+ +H ++L       +   P   RP + +        + + DLL    ++ S SP++
Sbjct: 585  FREKHNHKIKL------LEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYA 638

Query: 1142 CAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKS 1201
                 V K+     GT RL ++Y+ LN       +PIP  +DL+  L  A IFSK D+++
Sbjct: 639  SPVVLVKKKD----GTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRA 694

Query: 1202 GFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYI 1260
            G+ Q+++   D  KTAF    G +E+ VMPFGL NAP+ FQ +MN IF P   KF +V+ 
Sbjct: 695  GYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFF 754

Query: 1261 DDVLIFSQSIDQHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINR 1320
            DD+L++S S+++H +HL     +++ N +    +K +    K+ +LGH I    I     
Sbjct: 755  DDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPA 814

Query: 1321 AIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPPPWSDIHTNV 1380
             I+   ++P     K QL+ FLG   Y   F      I  PLH   K D   W+ +    
Sbjct: 815  KIKAVKEWPQPTTLK-QLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVAQQA 873

Query: 1381 VKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQ 1440
             + +K  +   P L LP      +VETDA   G G +L Q    +   +A+ S+     Q
Sbjct: 874  FEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ----EGHPLAYISRQLKGKQ 929

Query: 1441 QNYSTVKKEVLAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQA 1500
             + S  +KE+LA++ ++  ++  L+   F+++ D +S K +L++ +    +  I  +W  
Sbjct: 930  LHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRL----NTPIQQQWLP 985

Query: 1501 ILSVFDFEIEYIKGSTNSLPDFLTR 1525
             L  FD+EI+Y +G  N + D L+R
Sbjct: 986  KLLEFDYEIQYRQGKENVVADALSR 1010


>At1g36590 hypothetical protein
          Length = 1499

 Score =  211 bits (538), Expect = 2e-54
 Identities = 136/445 (30%), Positives = 224/445 (49%), Gaps = 20/445 (4%)

Query: 1082 FWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWS 1141
            F E+ +H ++L       +   P   RP + +        + + DLL    ++ S SP++
Sbjct: 585  FREKHNHKIKL------LEGSNPVNQRPYRYSIHQKNEIDKLVEDLLTNGTVQASSSPYA 638

Query: 1142 CAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKS 1201
                 V K+     GT RL ++Y+ LN       +PIP  +DL+  L  A IFSK D+++
Sbjct: 639  SPVVLVKKKD----GTWRLCVDYRELNGMTVKDSFPIPLIEDLMDELGGAVIFSKIDLRA 694

Query: 1202 GFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYI 1260
            G+ Q+++   D  KTAF    G +E+ VMPFGL NAP+ FQ +MN IF P   KF +V+ 
Sbjct: 695  GYHQVRMDPDDIQKTAFKTHSGHFEYLVMPFGLTNAPATFQGLMNFIFKPFLRKFVLVFF 754

Query: 1261 DDVLIFSQSIDQHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINR 1320
            DD+L++S S+++H +HL     +++ N +    +K +    K+ +LGH I    I     
Sbjct: 755  DDILVYSSSLEEHRQHLKQVFEVMRANKLFAKLSKCAFAVPKVEYLGHFISAQGIETDPA 814

Query: 1321 AIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPPPWSDIHTNV 1380
             I+   ++P     K QL+ FLG   Y   F      I  PLH   K D   W+ +    
Sbjct: 815  KIKAVKEWPQPTTLK-QLRGFLGLAGYYRRFVRSFGVIAGPLHALTKTDAFEWTAVAQQA 873

Query: 1381 VKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQ 1440
             + +K  +   P L LP      +VETDA   G G +L Q    +   +A+ S+     Q
Sbjct: 874  FEDLKAALCQAPVLSLPLFDKQFVVETDACGQGIGAVLMQ----EGHPLAYISRQLKGKQ 929

Query: 1441 QNYSTVKKEVLAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQA 1500
             + S  +KE+LA++ ++  ++  L+   F+++ D +S K +L++ +    +  I  +W  
Sbjct: 930  LHLSIYEKELLAVIFAVRKWRHYLLQSHFIIKTDQRSLKYLLEQRL----NTPIQQQWLP 985

Query: 1501 ILSVFDFEIEYIKGSTNSLPDFLTR 1525
             L  FD+EI+Y +G  N + D L+R
Sbjct: 986  KLLEFDYEIQYRQGKENVVADALSR 1010


>At4g10580 putative reverse-transcriptase -like protein
          Length = 1240

 Score =  210 bits (534), Expect = 6e-54
 Identities = 137/436 (31%), Positives = 221/436 (50%), Gaps = 15/436 (3%)

Query: 1093 PYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWSCAAFYVNKQAE 1152
            P+  +      P    P +M    +   ++++ DLL K  IR S SPW     +V K+  
Sbjct: 480  PFTIELEPGTAPLSKAPYRMAPAEMAELKKQLKDLLGKGFIRPSTSPWGAPVLFVKKKD- 538

Query: 1153 IERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKD 1212
               G+ RL I+Y+ LN+     RYP+P   +LL +L  A  FSK D+ SG+ QI + E D
Sbjct: 539  ---GSFRLCIDYRELNRVTVKNRYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEAD 595

Query: 1213 RYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSID 1271
              KTAF   +G +E+ VMPFGL NAP+ F R+MN +F     +F I++IDD+L++S+S +
Sbjct: 596  VRKTAFRTRYGHFEFVVMPFGLTNAPAVFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPE 655

Query: 1272 QHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQ 1331
            +   HL   +  +++  +    +K S +Q ++ FLGH +    +      IE    +P +
Sbjct: 656  EQEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWP-R 714

Query: 1332 IIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKN 1390
              + T+++ FLG   Y   F    +++ +P+     KD P  WS         +K  + +
Sbjct: 715  PTNATEIRSFLGWAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSQECEEGFVSLKEMLTS 774

Query: 1391 LPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEV 1450
             P L LP      +V TDAS +G G +L Q      ++IA+ S+     + NY T   E+
Sbjct: 775  TPVLALPEHGQPYMVYTDASRVGLGCVLMQ----HGKVIAYASRQLMKHEGNYPTHDLEM 830

Query: 1451 LAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIE 1510
             A++ ++  ++S L   K  V  D KS K I  +   NL  +    RW  +++ +D EI 
Sbjct: 831  AAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQR----RWMELVADYDLEIA 886

Query: 1511 YIKGSTNSLPDFLTRE 1526
            Y  G  N + D L+R+
Sbjct: 887  YHPGKANVVVDALSRK 902


>At2g10780 pseudogene
          Length = 1611

 Score =  208 bits (529), Expect = 2e-53
 Identities = 132/435 (30%), Positives = 221/435 (50%), Gaps = 15/435 (3%)

Query: 1093 PYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWSCAAFYVNKQAE 1152
            P+  +      P    P +M    +   ++++ +LL K  IR S SPW     +V K+  
Sbjct: 648  PFTIELEPGTTPISKAPYRMAPAEMAKLKKQLEELLDKGFIRPSSSPWGAPVLFVKKKD- 706

Query: 1153 IERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKD 1212
               G+ RL I+Y+ LN+     +YP+P   +L+ +L  A+ FSK D+ SG+ QI ++  D
Sbjct: 707  ---GSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTD 763

Query: 1213 RYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSID 1271
              KTAF   +  +E+ VMPFGL NAP+ F ++MN +F     +F I++I+D+L++S+S +
Sbjct: 764  VRKTAFRTRYDHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFINDILVYSKSWE 823

Query: 1272 QHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQ 1331
             H +HL   +  ++++ +    +K S +Q  + FLGH I    +      I    ++P +
Sbjct: 824  AHQEHLRAVLERLREHELFAKLSKCSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWP-R 882

Query: 1332 IIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKN 1390
              + T+++ FLG   Y   F    +++ +PL     KD    WSD       ++K  + N
Sbjct: 883  PRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLTN 942

Query: 1391 LPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEV 1450
             P L LP       V TDAS +G G +L Q    K  +IA+ S+     ++NY T   E+
Sbjct: 943  APVLVLPEEGEPYTVYTDASIVGLGCVLMQ----KGSVIAYASRQLRKHEKNYPTHDLEM 998

Query: 1451 LAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIE 1510
             A+V  +  ++S L   K  +  D KS K I  +   NL  +    RW  +++ ++ +I 
Sbjct: 999  AAVVFFLKIWRSYLYGAKVQIYTDHKSLKYIFTQPELNLRQR----RWMELVADYNLDIA 1054

Query: 1511 YIKGSTNSLPDFLTR 1525
            Y  G  N + D L+R
Sbjct: 1055 YHPGKANQVADALSR 1069



 Score = 32.3 bits (72), Expect = 2.2
 Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 3/40 (7%)

Query: 668 SKPHSTQAAKT--PPENRPQGKDV-TCYNCGKPGHISRYC 704
           SK H+ Q+     P +++  G++  TC+ CGK GH+ R C
Sbjct: 404 SKDHAIQSCPKMEPGQSKVLGEETRTCFYCGKTGHLKREC 443


>At2g04670 putative retroelement pol polyprotein
          Length = 1411

 Score =  206 bits (525), Expect = 6e-53
 Identities = 135/436 (30%), Positives = 218/436 (49%), Gaps = 15/436 (3%)

Query: 1093 PYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWSCAAFYVNKQAE 1152
            P+  +      P    P +M    +   ++++ DLL K  IR S SPW     +V K+  
Sbjct: 506  PFTIELEPGTAPLSKAPYRMAPAEMTELKKQLEDLLGKGFIRPSTSPWGAPVLFVKKKD- 564

Query: 1153 IERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKD 1212
               G+ RL I+Y+ LN      +YP+P   +LL +L  A  FSK D+ SG+ QI + E D
Sbjct: 565  ---GSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHQIPIAEAD 621

Query: 1213 RYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSID 1271
              KTAF   +G +E+ VMPF L NAP+ F R+MN +F     +F I++IDD+L++S+S +
Sbjct: 622  VRKTAFRTRYGHFEFVVMPFALTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVYSKSPE 681

Query: 1272 QHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQ 1331
            +H  HL   +  +++  +    +K S +Q +I FLGH +    +      IE    +P +
Sbjct: 682  EHEVHLRRVMEKLREQKLFAKLSKCSFWQREIGFLGHIVSAEGVSVDPEKIEAIRDWP-R 740

Query: 1332 IIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKN 1390
              + T+++ FL    Y   F    +++ +P+     KD P  WS         +K  + +
Sbjct: 741  PTNATEIRSFLRLTGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLTS 800

Query: 1391 LPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEV 1450
             P L LP      +V TDAS +G G +L Q    + ++IA+ S+     + NY T   E+
Sbjct: 801  TPVLALPEHGQPYMVYTDASRVGLGCVLMQ----RGKVIAYASRQLRKHEGNYPTHDLEM 856

Query: 1451 LAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIE 1510
              ++ ++  ++S L   K  V  D KS K I  +   NL       RW  +++ +D EI 
Sbjct: 857  AVVIFALKIWRSYLYGGKVQVFTDHKSLKYIFNQPELNLRQ----MRWMELVADYDLEIA 912

Query: 1511 YIKGSTNSLPDFLTRE 1526
            Y  G  N + D L+R+
Sbjct: 913  YHPGKANVVADALSRK 928


>At2g06890 putative retroelement integrase
          Length = 1215

 Score =  195 bits (496), Expect = 1e-49
 Identities = 121/374 (32%), Positives = 195/374 (51%), Gaps = 15/374 (4%)

Query: 1156 GTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYK 1215
            G+ R+  + + +N       +PIP   D+L  LH + IFSK D+KSG+ QI++ E D +K
Sbjct: 467  GSWRMCFDCRAINNVTVKYCHPIPRLDDMLDELHGSSIFSKIDLKSGYHQIRMNEGDEWK 526

Query: 1216 TAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSIDQHF 1274
            TAF    G YEW VMPFGL +APS F R+MN +       F IVY DD+L++S+S+ +H 
Sbjct: 527  TAFKTKHGLYEWLVMPFGLTHAPSTFMRLMNHVLRAFIGIFVIVYFDDILVYSESLREHI 586

Query: 1275 KHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIID 1334
            +HL++ +++++K  +  +  K +     + FLG  +    +      ++    +P     
Sbjct: 587  EHLDSVLNVLRKEELYANLKKCTFCTDNLVFLGFVVSADGVKVDEEKVKAIRDWPS---P 643

Query: 1335 KT--QLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKNL 1391
            KT  +++ F G   +   F    STI+ PL + +KKD    W        + +K ++ N 
Sbjct: 644  KTVGEVRSFHGLAGFYRRFFKDFSTIVAPLTEVMKKDVGFKWEKAQEEAFQSLKDKLTNA 703

Query: 1392 PCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEVL 1451
            P L L        +E DAS IG G +L Q     +++IAF S+    A  NY T  KE+ 
Sbjct: 704  PVLILSEFLKTFEIECDASGIGIGAVLMQ----DQKLIAFFSEKLGGATLNYPTYDKELY 759

Query: 1452 AIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEY 1511
            A+V ++  +Q  L  + F++  D +S K +  K  + L  +H  ARW   +  F + I+Y
Sbjct: 760  ALVRALQRWQHYLWPKVFVIHTDHESLKHL--KGQQKLNKRH--ARWVEFIETFAYVIKY 815

Query: 1512 IKGSTNSLPDFLTR 1525
             KG  N + D L++
Sbjct: 816  KKGKDNVVADALSQ 829



 Score = 40.8 bits (94), Expect = 0.006
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 29/164 (17%)

Query: 609 QQLTKEKSQNRRDLGTFCEQFGIQGCPKKPKPRKQDPPPKQQWRRKSSQNHDHRKPKPRS 668
           +Q  K KS +R   G+        G   KP  ++++       R  S  N     P+  S
Sbjct: 90  EQQVKRKSSSRSSYGS--------GTIAKPTYQREE-------RTSSYHNKPIVSPRAES 134

Query: 669 KPHST-QAAKTPPE-NRPQGKDVTCYNCGKPGHISRYCRLKRRI-----SELHLEPEIED 721
           KP++  Q  K   E +  + +DV CY C   GH +  C  KR +      E+  E EI D
Sbjct: 135 KPYAAVQDHKGKAEISTSRVRDVRCYKCQGKGHYANECPNKRVMILLDNGEIEPEEEIPD 194

Query: 722 KINNLLIQTSDEEESVPSDSE--VSEDLNQIQNDDDQSSSSINV 763
             ++L      E E +P+  E  V+     +Q   D+     N+
Sbjct: 195 SPSSL-----KENEELPAQGELLVARRTLSVQTKTDEQEQRKNL 233


>At2g07660 putative retroelement pol polyprotein
          Length = 949

 Score =  188 bits (478), Expect = 2e-47
 Identities = 118/375 (31%), Positives = 195/375 (51%), Gaps = 11/375 (2%)

Query: 1093 PYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWSCAAFYVNKQAE 1152
            P+  +      P    P +M    +   ++++ +LL K  IR S SPW     +V K+  
Sbjct: 143  PFTIELEPGTTPISKAPYRMAPAEMAELKKQLEELLAKGFIRPSSSPWGAPVLFVKKKD- 201

Query: 1153 IERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKD 1212
               G+ RL I+Y+ LN+     +YP+P   +L+ +L  A+ FSK D+ SG+ QI ++  D
Sbjct: 202  ---GSFRLCIDYRGLNKVTVKNKYPLPRIDELMDQLGGAQWFSKIDLASGYHQIPIEPTD 258

Query: 1213 RYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSID 1271
              KTAF   +G +E+ VMPFGL NAP+ F ++MN +F     +F I++IDD+L+ S+S +
Sbjct: 259  VRKTAFRTRYGHFEFVVMPFGLTNAPAAFMKMMNGVFRDFLDEFVIIFIDDILVHSKSWE 318

Query: 1272 QHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQ 1331
             H +HL   +  ++++ +    +K S +Q  + FLGH I    +      I    ++P +
Sbjct: 319  AHQEHLRAVLERLREHELFAKLSKFSFWQRSVGFLGHVISDQGVSVDPEKIRSIKEWP-R 377

Query: 1332 IIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKN 1390
              + T+++ FLG   Y   F    +++ +PL     KD    WSD       ++K  + N
Sbjct: 378  PRNATEIRSFLGLAGYYRRFVMSFASMAQPLTRLTGKDTAFNWSDECEKSFLELKAMLIN 437

Query: 1391 LPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEV 1450
             P L LP       V TDAS +G G +L Q    K  +IA+ S+     ++NY T   E+
Sbjct: 438  APVLVLPEEGEPYTVYTDASIVGLGCVLMQ----KGSVIAYASRQLRKHEKNYPTHDLEM 493

Query: 1451 LAIVLSISNFQSDLI 1465
             A+V ++  ++S LI
Sbjct: 494  AAVVFALKIWRSYLI 508


>At1g35370 hypothetical protein
          Length = 1447

 Score =  182 bits (463), Expect = 1e-45
 Identities = 137/469 (29%), Positives = 224/469 (47%), Gaps = 31/469 (6%)

Query: 1060 KSRIENILENIQSSIC--FDLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELL 1117
            +S ++NI+E          DLP  F E+  H ++L       +   P   RP +      
Sbjct: 541  ESVVQNIVEEFPDVFAEPTDLP-PFREKHDHKIKL------LEGANPVNQRPYRYVVHQK 593

Query: 1118 QFFQREINDLLQKKLIRRSKSPWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYP 1177
                + + D+++   I+ S SP++     V K+     GT RL ++Y  LN      R+ 
Sbjct: 594  DEIDKIVQDMIKSGTIQVSSSPFASPVVLVKKKD----GTWRLCVDYTELNGMTVKDRFL 649

Query: 1178 IPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNA 1237
            IP  +DL+  L  + +FSK D+++G+ Q+++   D  KTAF    G +E+ VM FGL NA
Sbjct: 650  IPLIEDLMDELGGSVVFSKIDLRAGYHQVRMDPDDIQKTAFKTHNGHFEYLVMLFGLTNA 709

Query: 1238 PSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSIDQHFKHLNTFISIIKKNGMAVSKTKV 1296
            P+ FQ +MN +F     KF +V+ DD+LI+S SI++H +HL     +++ + +    +K 
Sbjct: 710  PATFQSLMNSVFRDFLRKFVLVFFDDILIYSSSIEEHKEHLRLVFEVMRLHKLFAKGSK- 768

Query: 1297 SLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLS 1356
                     LGH I    I      I+   ++P     K Q++ FLG   Y   F     
Sbjct: 769  -------EHLGHFISAREIETDPAKIQAVKEWPTPTTVK-QVRGFLGFAGYYRRFVRNFG 820

Query: 1357 TIIKPLHDRLKKDPPPWSDIHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGG 1416
             I  PLH   K D   WS    +    +K  + N P L LP      +VETDA   G   
Sbjct: 821  VIAGPLHALTKTDGFCWSLEAQSAFDTLKAVLCNAPVLALPVFDKQFMVETDACGQGIRA 880

Query: 1417 ILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISNFQSDLINQKFLVRVDCK 1476
            +L Q    K   +A+ S+     Q + S  +KE+LA + ++  ++  L+   F+++ D +
Sbjct: 881  VLMQ----KGHPLAYISRQLKGKQLHLSIYEKELLAFIFAVRKWRHYLLPSHFIIKTDQR 936

Query: 1477 SAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTR 1525
            S K +L++ +     +    +W   L  FD+EI+Y +G  N + D L+R
Sbjct: 937  SLKYLLEQRLNTPVQQ----QWLPKLLEFDYEIQYRQGKENLVADALSR 981


>At2g14650 putative retroelement pol polyprotein
          Length = 1328

 Score =  182 bits (462), Expect = 1e-45
 Identities = 125/437 (28%), Positives = 214/437 (48%), Gaps = 29/437 (6%)

Query: 1093 PYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWSCAAFYVNKQAE 1152
            P+  +      P    P +M    +   ++++ DLL   ++            +V K+  
Sbjct: 467  PFTIELEPGTAPLSKAPYRMAPAEMAELKKQLEDLLGAPVL------------FVKKKD- 513

Query: 1153 IERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKD 1212
               G+ RL I+Y+ LN      +YP+P   +LL +L  A  FSK D+ SG+  I + E D
Sbjct: 514  ---GSFRLCIDYRGLNWVTVKNKYPLPRIDELLDQLRGATCFSKIDLTSGYHLIPIAEAD 570

Query: 1213 RYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSID 1271
              KTAF   +G +E+ VMPFGL NAP+ F R+MN +F     +F I++IDD+L++S+S++
Sbjct: 571  VRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEVLDEFVIIFIDDILVYSKSLE 630

Query: 1272 QHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIH-QGTIIPINRAIEFTDKFPD 1330
            +H  HL   +  +++  +    +K S +Q ++ FLGH +  +G  +   +     D    
Sbjct: 631  EHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIRDWHTP 690

Query: 1331 QIIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIK 1389
               + T+++ FLG   Y   F    +++ +P+     KD P  WS         +K  + 
Sbjct: 691  --TNATEIRSFLGLAGYYRRFVKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLKEMLT 748

Query: 1390 NLPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKE 1449
            + P L LP      +V TDAS +G G +L Q    + ++IA+ S+     + NY T   E
Sbjct: 749  STPVLALPEHGEPYMVYTDASGVGLGCVLMQ----RGKVIAYASRQLRKHEGNYPTHDLE 804

Query: 1450 VLAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEI 1509
            + A++ ++  ++S L      V  D KS K I  +   NL  +    +W  +++ +D EI
Sbjct: 805  MAAVIFALKIWRSYLYGGNVQVFTDHKSLKYIFTQPELNLRQR----QWMELVADYDLEI 860

Query: 1510 EYIKGSTNSLPDFLTRE 1526
             Y  G  N + D L+ +
Sbjct: 861  AYHPGKANVVADALSHK 877


>At2g05610 putative retroelement pol polyprotein
          Length = 780

 Score =  171 bits (432), Expect = 4e-42
 Identities = 125/450 (27%), Positives = 207/450 (45%), Gaps = 72/450 (16%)

Query: 1077 DLPNAFWERKSHMVELPYEKDFSDKQIPTKARPIQMNEELLQFFQREINDLLQKKLIRRS 1136
            DLP  F     H +EL  + +      P   RP +          + ++D+L    I+ S
Sbjct: 23   DLP-PFRAPHDHKIELLEDSN------PVNQRPYRYVVHQKNEIDKIVDDMLASGTIQAS 75

Query: 1137 KSPWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSK 1196
             SP++     V K+     GT RL ++Y+ LN      R+PIP  +DL+  L  + ++SK
Sbjct: 76   SSPYASPVVLVKKKD----GTWRLCVDYRELNGMTVKDRFPIPLIEDLMDELGGSNVYSK 131

Query: 1197 FDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKF 1255
             D+++G+ Q+++   D +KTAF    G YE+ VMPFGL NAP+ FQ +MN  F P   KF
Sbjct: 132  IDLRAGYHQVRMDPLDIHKTAFKTHNGHYEYLVMPFGLTNAPASFQSLMNSFFKPFLRKF 191

Query: 1256 AIVYIDDVLIFSQSIDQHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTI 1315
             +V+ DD+LI+S S+++H KHL     +++ + +    +K +    ++ +LGH I    I
Sbjct: 192  VLVFFDDILIYSTSMEEHKKHLEAVFEVMRVHHLFAKMSKCAFAVPRVEYLGHFISGEGI 251

Query: 1316 IPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPPPWSD 1375
                  I+    +P   ++  QL  FLG   Y   F                        
Sbjct: 252  ATDPAKIKAVQDWPVP-VNLKQLCGFLGLTGYYRRFF----------------------- 287

Query: 1376 IHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKH 1435
                                        +VE DA   G G +L Q    +   +AF S+ 
Sbjct: 288  ----------------------------VVEMDACGHGIGAVLMQ----EGHPLAFISRQ 315

Query: 1436 WNPAQQNYSTVKKEVLAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIF 1495
                Q + S  +KE+LA++  +  ++  LI+  F+++ D +S K +L++ +    +  I 
Sbjct: 316  LKGKQLHLSIYEKELLAVIFVVRKWRHYLISSHFIIKTDQRSLKYLLEQRL----NTPIQ 371

Query: 1496 ARWQAILSVFDFEIEYIKGSTNSLPDFLTR 1525
             +W   L  FD+EI+Y +G  N + D L+R
Sbjct: 372  QQWLPKLLEFDYEIQYKQGKENLVADALSR 401


>At4g08100 putative polyprotein
          Length = 1054

 Score =  157 bits (396), Expect = 6e-38
 Identities = 103/350 (29%), Positives = 166/350 (47%), Gaps = 39/350 (11%)

Query: 1165 KPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQ 1224
            + +N      R+PIP   D L +LH + IFSK D+KSG+ Q +++E D +KTA       
Sbjct: 529  RAINNITVKYRHPIPRLDDTLDKLHGSSIFSKIDLKSGYHQTRMKEGDEWKTAIKTKQRL 588

Query: 1225 YEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSIDQHFKHLNTFISI 1283
            YEW VMPFGL NAP+ F R+MN +       F IVY DD+L++S++++ H  HL   + +
Sbjct: 589  YEWLVMPFGLTNAPNTFMRLMNHVLRKHIGVFVIVYFDDILVYSKNLEYHVMHLKLVLDL 648

Query: 1284 IKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLG 1343
            ++K  +  +  K +     + FLG  +    I      ++   ++P+    K   ++ +G
Sbjct: 649  LRKEKLYANLKKCTFCTDNLVFLGFVVSADGIKVDEEKVKAIREWPN---PKNVSEKDIG 705

Query: 1344 CLNYVADFCPQLSTIIKPLHDRLKKDPPPWSDIHTNVVKQIKLRIKNLPCLYLPNPQAFK 1403
                                         W D   N  + +K ++ N     LPN     
Sbjct: 706  F---------------------------KWEDAQENAFQALKEKLTNSSVPILPNFMKSF 738

Query: 1404 IVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISNFQSD 1463
             +E DAS +G G +L Q      + IA+ S+    A  NY T  KE+ A+V ++  +Q  
Sbjct: 739  EIECDASGLGIGAVLMQ----DHKPIAYFSEKLGGATLNYPTYDKELYALVRALQTWQHY 794

Query: 1464 LINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFEIEYIK 1513
            L  +KF++  D +S K +  K  + L  +H  ARW   +  F + I+Y K
Sbjct: 795  LWPKKFVIHTDHESLKHL--KGQQKLNKRH--ARWVEFIETFPYVIKYKK 840


>At4g03650 putative reverse transcriptase
          Length = 839

 Score =  144 bits (362), Expect = 5e-34
 Identities = 95/306 (31%), Positives = 156/306 (50%), Gaps = 11/306 (3%)

Query: 1208 LQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIF 1266
            L E D  KTAF   +G +E+ VMPFGL NAP+ F R+MN +F     +F I++IDD+L++
Sbjct: 516  LAEADVRKTAFRTRYGHFEFVVMPFGLTNAPAAFMRLMNSVFQEFLDEFVIIFIDDILVY 575

Query: 1267 SQSIDQHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTD 1326
            S+S ++H  HL   +  +++  +    +K S +Q ++ FLGH +    +      IE   
Sbjct: 576  SKSPEEHEVHLRRVMEKLREQKLFAKLSKCSFWQREMGFLGHIVSAEGVSVDPEKIEAIR 635

Query: 1327 KFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIK 1385
             +P +  + T+++ FLG   Y   F    +++ +P+     KD P  WS         +K
Sbjct: 636  DWP-RPTNATEIRSFLGLAGYYRRFIKGFASMAQPMTKLTGKDVPFVWSPECEEGFVSLK 694

Query: 1386 LRIKNLPCLYLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYST 1445
              + + P L LP      +V TDAS +G G  L Q    + ++IA+ S+     + NY T
Sbjct: 695  EMLTSTPVLALPEHGEPYMVYTDASGVGLGCALMQ----RGKVIAYASRQLRKHEGNYPT 750

Query: 1446 VKKEVLAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVF 1505
               E+ A++ ++  ++S L   K  V  D KS K I  +   NL  +    RW  +++ +
Sbjct: 751  HDLEMAAVIFALKIWRSYLYGGKVQVFTDHKSLKYIFTQPELNLRQR----RWMELVADY 806

Query: 1506 DFEIEY 1511
            D EI Y
Sbjct: 807  DLEIAY 812


>At4g04230 putative transposon protein
          Length = 315

 Score =  121 bits (304), Expect = 3e-27
 Identities = 67/179 (37%), Positives = 100/179 (55%), Gaps = 5/179 (2%)

Query: 1128 LQKKLIRRSKSPWSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNKKDLLAR 1187
            + K  IR S SP +     V K+     GT R+ ++ + +N      R+PIP   D+L  
Sbjct: 125  IHKGYIRESLSPCAVPVLLVPKKD----GTWRMCLDCRAINNITIKYRHPIPRLYDMLDE 180

Query: 1188 LHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNE 1247
            L  A IFSK D++SG+ Q++++E D +KTAF    G YE  VMPFGL NAPS F R+MN+
Sbjct: 181  LSGAIIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQ 240

Query: 1248 IFNP-*SKFAIVYIDDVLIFSQSIDQHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRF 1305
            +      KF +VY DD+LI+++S   H + L   +  ++K G+  +  K +    K  F
Sbjct: 241  VLRSFIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSDKFFF 299


>At1g20390 hypothetical protein
          Length = 1791

 Score =  118 bits (295), Expect = 3e-26
 Identities = 152/708 (21%), Positives = 297/708 (41%), Gaps = 56/708 (7%)

Query: 824  KPVTIQDLQSEVHILKA-------EVKSLKQIQTSQQLILEKLTEENSNGGSSSSSSSTS 876
            +PV ++    +VH++          V+S+KQ +   ++++            SS+S++ +
Sbjct: 500  EPVVVR----QVHVIMGGLQNCSDSVRSIKQYRKKAEMVV---------AWPSSTSTTRN 546

Query: 877  TSNRAPNNNVGDFLEIINYVTIQKFYINITIIIGDFILETPALFDTGADSSCISEGL--- 933
             +  AP +     LE ++  T     + + +II D  + T  L DTG+    I + +   
Sbjct: 547  PNQSAPISFTDVDLEGLD--TPHNDPLVVELIISDSRV-TRVLIDTGSSVDLIFKDVLTA 603

Query: 934  --IPTRYFEKTTEKLSGAEGSKLIIKYKIPSAIIKNDSLEIETSFLLVRNLTHKVIIETP 991
              I  R  +  ++ L+G +G  ++    I   I     +      ++ +   + VI+ TP
Sbjct: 604  MNITDRQIKPVSKPLAGFDGDFVMTIGTIKLPIFVGGLIAWVKFVVIGKPAVYNVILGTP 663

Query: 992  FIKKL--FPYNTDEKGITVQHHGQPIVFKFSKPPFVKTLNIISYKEKQINF-----LKEE 1044
            +I ++   P    +      H+G   +F    P   KT +  SY+E ++       + E 
Sbjct: 664  WIHQMQAIPSTYHQCVKFPTHNG---IFTLRAPKEAKTPSR-SYEESELCRTEMVNIDES 719

Query: 1045 ISYKNIEVQLQ-QPSVKSRIENILENIQSSICFDLPNAFWERKSHMVELPYEKDFSDKQI 1103
               + + V  +  PS++  +  +L+    +  + + +    +        +E +      
Sbjct: 720  DPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDM---KGIDPAITAHELNVDPTFK 776

Query: 1104 PTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSP-WSCAAFYVNKQAEIERGTPRLVI 1162
            P K +  ++  E  +    E+  LL+   I   K P W      V K+     G  R+ +
Sbjct: 777  PVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKK----NGKWRVCV 832

Query: 1163 NYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPF 1222
            +Y  LN+A     YP+P+   L+       + S  D  SG+ QI + + D+ KT+F    
Sbjct: 833  DYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTDR 892

Query: 1223 GQYEWNVMPFGLKNAPSEFQRIMNEIF-NP*SKFAIVYIDDVLIFSQSIDQHFKHLNTFI 1281
            G Y + VM FGLKNA + +QR +N++  +   +   VYIDD+L+ S   + H +HL+   
Sbjct: 893  GTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKCF 952

Query: 1282 SIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRF 1341
             ++   GM ++ TK +   T   FLG+ + +  I    + I    + P    +  ++QR 
Sbjct: 953  DVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSP-RNAREVQRL 1011

Query: 1342 LGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKNLPCLYLPNPQ 1400
             G +  +  F  + +    P ++ LK+     W        +++K  +   P L  P   
Sbjct: 1012 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1071

Query: 1401 AFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISNF 1460
                +    SD     +L ++   +++ I +TSK    A+  Y  ++K  LA+V S    
Sbjct: 1072 ETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKL 1131

Query: 1461 QSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFARWQAILSVFDFE 1508
            +    +    V  D       L+  + + +      +W   LS +D +
Sbjct: 1132 RPYFQSHTIAVLTD-----QPLRVALHSPSQSGRMTKWAVELSEYDID 1174


>At2g06170 putative Ty3-gypsy-like retroelement pol polyprotein
          Length = 587

 Score =  110 bits (274), Expect = 8e-24
 Identities = 50/113 (44%), Positives = 76/113 (67%), Gaps = 1/113 (0%)

Query: 1165 KPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQ 1224
            K +N+     R+PIP   D+L  L  +K+FSK D++SG+ QI+++  D +KT F    G 
Sbjct: 401  KAINKITIKYRFPIPQLDDMLDELSGSKVFSKIDLRSGYHQIRIRPGDEWKTDFKSKDGL 460

Query: 1225 YEWNVMPFGLKNAPSEFQRIMNEIFNP*S-KFAIVYIDDVLIFSQSIDQHFKH 1276
            YEW VMPFG+ NAPS F R+MN+I  P +  F +VY DD+LI+S++ +++ +H
Sbjct: 461  YEWQVMPFGMSNAPSTFMRLMNQILRPFTGSFVVVYFDDILIYSKTKEEYLEH 513


>At2g10690 putative retroelement pol polyprotein
          Length = 622

 Score =  106 bits (264), Expect = 1e-22
 Identities = 95/328 (28%), Positives = 151/328 (45%), Gaps = 19/328 (5%)

Query: 1204 WQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP*-SKFAIVYIDD 1262
            +++Q     + KT FT P G + +  M FGL NAP  FQR M  IF+    +   V++DD
Sbjct: 154  FKLQFTLMIKKKTTFTCPNGTFAYKRMSFGLCNAPGTFQRSMTSIFSDFIEEIMEVFMDD 213

Query: 1263 VLIFSQSIDQHFKHLNTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRA- 1321
               FS  +     +L   +   ++  + ++  K      +   LGH I  G  I +++A 
Sbjct: 214  FSGFSSCL----LNLCRVLERCEETNLVLNWEKCHFMVHEGIVLGHKI-SGKGIEVDKAK 268

Query: 1322 --IEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHT 1378
              +    + P  + D   ++ FLG   +   F    S I +PL   L K+    + +   
Sbjct: 269  IDVMIQLQPPKTVKD---IRSFLGHAEFYRRFIKDFSKIARPLTRLLCKETEFNFDEDCL 325

Query: 1379 NVVKQIKLRIKNLPCLYLPN-PQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWN 1437
                 IK  + + P    PN    F+I+  DA D   G +L QKI DK  +I + S+  +
Sbjct: 326  KAFHLIKETLVSAPIFQAPNWDHPFEIM-CDAFDYAVGAVLDQKIDDKLHVIYYASRTMD 384

Query: 1438 PAQQNYSTVKKEVLAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDVKNLASKHIFAR 1497
             AQ  Y+T++KE+LA+V +    +S L+  K  V +D  + + I  K      +K    R
Sbjct: 385  EAQTRYATIEKELLAVVFAFEKIRSYLVGFKVKVYIDHAALRHIYAKK----ETKSRLLR 440

Query: 1498 WQAILSVFDFEIEYIKGSTNSLPDFLTR 1525
            W  +L  FD EI   KG  N + D L+R
Sbjct: 441  WILLLQEFDMEIIDKKGVENGVADHLSR 468


>At4g07600
          Length = 630

 Score =  104 bits (259), Expect = 4e-22
 Identities = 83/294 (28%), Positives = 132/294 (44%), Gaps = 21/294 (7%)

Query: 1159 RLVINYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAF 1218
            R+ I+Y+ LN A     +P+P    +L RL +   +   D  SGF+QI +   D  KT F
Sbjct: 356  RMCIDYRNLNAASRNDHFPLPFTDQMLERLANHPYYCFLDGYSGFFQIPIHPNDHEKTTF 415

Query: 1219 TVPFGQYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSIDQHFKHL 1277
            T P+G + +  MPFGL NAP+ FQR M  IF+    +   V++DD  ++  S      +L
Sbjct: 416  TCPYGTFAYERMPFGLCNAPATFQRCMTSIFSDIIEEMVEVFMDDFSVYGPSFSSCLLNL 475

Query: 1278 NTFISIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQ 1337
               ++  ++  + ++  K      +   LGH I +       + IE         +DK  
Sbjct: 476  GRVLTRCEETNLVLNWEKCHFMVKEGIMLGHKISE-------KGIE---------VDK-- 517

Query: 1338 LQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKNLPCLYL 1396
               FLG   +   F    S I +PL   L K+    + +        IK  + + P +  
Sbjct: 518  -GCFLGHAGFYRRFIKDFSKIARPLTRLLCKETEFEFDEDCPKSFHTIKEALVSAPVVRA 576

Query: 1397 PNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEV 1450
             N      +  DA D   G +L QKI  K  +I + S+  + AQ  Y+T +KE+
Sbjct: 577  TNWDYPFEIMCDALDYAVGAVLGQKIDKKLHVIYYASRTLDEAQGRYATTEKEL 630


>At2g15410 putative retroelement pol polyprotein
          Length = 1787

 Score = 99.4 bits (246), Expect = 1e-20
 Identities = 92/362 (25%), Positives = 161/362 (44%), Gaps = 40/362 (11%)

Query: 1104 PTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSP-WSCAAFYVNKQAEIERGTPRLVI 1162
            P K +  ++  +  +    E+  LL    I   + P W      V K+     G  R+ I
Sbjct: 782  PLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEVRYPDWLRNPVVVKKK----NGKWRVCI 837

Query: 1163 NYKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPF 1222
            ++  LN+A     +P+P+   L+      ++ S  D  SG+ QI + + DR KT F    
Sbjct: 838  DFTDLNKACPKDSFPLPHIDRLVEATAGNELLSFMDAFSGYNQILMHQNDREKTVFITDQ 897

Query: 1223 GQYEWNVMPFGLKNAPSEFQRIMNEIFNP*SKFAI-VYIDDVLIFSQSIDQHFKHLNTFI 1281
            G Y + VMPFGLKNA + + R++N++F      ++ VYIDD+L+ S   ++H  HL    
Sbjct: 898  GTYCYKVMPFGLKNAGATYPRLVNQMFTDQLDHSMEVYIDDMLVKSLRAEEHITHLRQCF 957

Query: 1282 SIIKKNGMAVSKTKVSLFQTKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIID------K 1335
             ++ +  M ++ +K +   T   FLG+       +   R IE   K    IID       
Sbjct: 958  QVLNRYNMKLNPSKCTFGVTSGEFLGY-------LVTRRGIEANPKQISAIIDLPSPRNT 1010

Query: 1336 TQLQRFLGCLNYVADFCPQLSTIIKPLHDRLKKDPP-PWSDIHTNVVKQIKLRIKNLPCL 1394
             ++QR +G +  +  F  + +    P +  L+ +    W +           + +    L
Sbjct: 1011 REVQRLIGRIAALNRFISRSTDKCLPFYQLLRANKRFEWDE-----------KCEEGETL 1059

Query: 1395 YLPNPQAFKIVETDASDIGFGGILKQKIIDKEQIIAFTSKHWNPAQQNYSTVKKEVLAIV 1454
            YL     +  V T A      G+L ++   ++  I + SK  + A+  Y T++K   A+V
Sbjct: 1060 YL-----YIAVSTSA----VSGVLVREDRGEQHPIFYVSKTLDGAELRYPTLEKLAFAVV 1110

Query: 1455 LS 1456
            +S
Sbjct: 1111 IS 1112


>At1g36120 putative reverse transcriptase gb|AAD22339.1
          Length = 1235

 Score = 97.8 bits (242), Expect = 4e-20
 Identities = 58/171 (33%), Positives = 87/171 (49%), Gaps = 23/171 (13%)

Query: 1104 PTKARPIQMNEELLQFFQREINDLLQKKLIRRSKSPWSCAAFYVNKQAEIERGTPRLVIN 1163
            P    P +M    +   ++++ DLL K  IR S S W               G P L   
Sbjct: 535  PLSKTPYRMVPAEIAELKKQLEDLLGKGFIRPSTSRW---------------GAPGL--- 576

Query: 1164 YKPLNQALCWIRYPIPNKKDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFG 1223
                N+     +YP+P   +LL +L  A  FSK D+  G+ Q  + E D  KTAF   +G
Sbjct: 577  ----NRVTLKNKYPLPRIDELLDQLRGATCFSKIDLTPGYHQFPIAEADVRKTAFRTRYG 632

Query: 1224 QYEWNVMPFGLKNAPSEFQRIMNEIFNP-*SKFAIVYIDDVLIFSQSIDQH 1273
             +E+ VMPFGL NAP+   R+MN +F     +F I++IDD+L++ +S ++H
Sbjct: 633  HFEFVVMPFGLTNAPTALMRLMNSVFQEFLDEFVIIFIDDILVYFKSPEEH 683



 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 1427 QIIAFTSKHWNPAQQNYSTVKKEVLAIVLSISNFQSDLINQKFLVRVDCKSAKDILQKDV 1486
            ++I + S+     + NY T   E+ AI+ ++  + S L   K  V  D KS KDI  +  
Sbjct: 723  KVIVYASRQLRKHEGNYPTHDLEMAAIIFALKIWGSYLYGGKVQVFTDHKSLKDIFTQPE 782

Query: 1487 KNLASKHIFARWQAILSVFDFEIEYIKGSTNSLPDFLTRE 1526
             NL  +    RW  +++ +D EI Y  G TN + D L+R+
Sbjct: 783  LNLRQR----RWMELVADYDLEIAYHPGKTNVVADALSRK 818


>At2g14400 putative retroelement pol polyprotein
          Length = 1466

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 80/299 (26%), Positives = 135/299 (44%), Gaps = 8/299 (2%)

Query: 1123 EINDLLQKKLIRRSKSP-WSCAAFYVNKQAEIERGTPRLVINYKPLNQALCWIRYPIPNK 1181
            E++ LL+   IR  + P W      V K+     G  R+ I++  LN+A     +P+P+ 
Sbjct: 483  EVDKLLKIGSIREVQYPDWLANTVVVKKK----NGKDRVCIDFTDLNKACPKDSFPLPHI 538

Query: 1182 KDLLARLHDAKIFSKFDMKSGFWQIQLQEKDRYKTAFTVPFGQYEWNVMPFGLKNAPSEF 1241
              L+      ++ S  D  SG+ QI +  +D+ KT F    G Y + VMPFGL+NA + +
Sbjct: 539  DRLVESTAGNELLSFMDAFSGYNQIMMNPEDQEKTLFITDRGIYCYKVMPFGLRNAGATY 598

Query: 1242 QRIMNEIFNP-*SKFAIVYIDDVLIFSQSIDQHFKHLNTFISIIKKNGMAVSKTKVSLFQ 1300
             R++N++F+    K   VYIDD+LI S   + H KHL    +I+ +  M ++  K +   
Sbjct: 599  PRLVNKMFSEHVGKTMEVYIDDMLIKSLKKEDHVKHLEECFAILNQYQMKLNPAKCTFGV 658

Query: 1301 TKIRFLGHNIHQGTIIPINRAIEFTDKFPDQIIDKTQLQRFLGCLNYVADFCPQLSTIIK 1360
                FLG+ + +  I      I      P     K ++QR  G +  +  F  + +    
Sbjct: 659  PSGEFLGYIVTKRGIEANPNQINAFLNMPSPKNFK-EVQRLTGRIAALNRFISRSTDKSL 717

Query: 1361 PLHDRLKKDPP-PWSDIHTNVVKQIKLRIKNLPCLYLPNPQAFKIVETDASDIGFGGIL 1418
            P +  LK +    W +       Q+K  + + P L+ P       +    S+    G+L
Sbjct: 718  PFYQILKGNKEFLWDEKCEEAFGQLKAYLTSPPVLFKPELDEKLYLYVSVSNHAVSGVL 776


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.316    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,787,780
Number of Sequences: 26719
Number of extensions: 1675502
Number of successful extensions: 8297
Number of sequences better than 10.0: 159
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 7812
Number of HSP's gapped (non-prelim): 433
length of query: 1526
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1414
effective length of database: 8,326,068
effective search space: 11773060152
effective search space used: 11773060152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)