BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0173b.2
(347 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54760 Putative protein 40 0.001
At4g07521 putative protein 40 0.002
At4g35680 putative protein 38 0.009
At4g26630 unknown protein 37 0.016
At1g76780 putative heat shock protein 37 0.021
At5g25590 unknown protein (At5g25590) 36 0.027
At4g01590 unknown protein 36 0.027
At4g00830 unknown protein 36 0.027
At2g07670 putative non-LTR retrolelement reverse transcriptase 36 0.027
At5g23420 unknown protein 35 0.046
At1g55860 ubiquitin-protein ligase 1, putative 35 0.079
At1g47970 Unknown protein (T2J15.12) 35 0.079
At5g55660 putative protein 34 0.10
At4g08820 putative protein 34 0.10
At3g56860 unknown protein 34 0.10
At4g25340 unknown protein 34 0.13
At4g24230 unknown protein 34 0.13
At3g43060 putative protein 34 0.13
At4g14140 (cytosine-5-)-methyltransferase 33 0.18
At3g58440 putative protein 33 0.18
>At3g54760 Putative protein
Length = 792
Score = 40.4 bits (93), Expect = 0.001
Identities = 29/119 (24%), Positives = 48/119 (39%), Gaps = 2/119 (1%)
Query: 160 SEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGGDARIVAVQ 219
S + E D++ D D N + G T+D D+ D++ R + + GD V V+
Sbjct: 28 SSKTETLVDEDANTDLGVSDKNPNDGGLATVDVDDDDDVKRTDAVTEIECEGDTGTVEVK 87
Query: 220 GGDGISPEEVAVKNNQPEKKESFGPNSNSNSLSLMAALNSVAEQKEQLRDIIDAGYSLE 278
D + E VK+ E+ G NS++ A + E + DA +E
Sbjct: 88 LNDETAKSE--VKSKSGATHETAGEEETENSVANEATDEKATCEVEDNGGVCDAEQDVE 144
>At4g07521 putative protein
Length = 223
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 63 VWIRLWQVPLGLWNEAFFAAIGNKLGTFVLADTPNVLRHRADFARVLVRMN 113
VWIRL VP+ ++ + +I LG DT + RA FARV V MN
Sbjct: 55 VWIRLTNVPVNFYHPSILMSIAGGLGKPFKVDTMTLNHERARFARVCVEMN 105
>At4g35680 putative protein
Length = 503
Score = 37.7 bits (86), Expect = 0.009
Identities = 26/71 (36%), Positives = 35/71 (48%), Gaps = 3/71 (4%)
Query: 136 EKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEI 195
E D++ D V E + S N E+E+ E D++V E E +E DN D D DE
Sbjct: 432 EADLQKLD--VFEKLESKFKTQGNEEKEDGEDDEQVVESEGEESDNGDYDQNQDFDDDED 489
Query: 196 DEIY-RDGGLE 205
D + DGG E
Sbjct: 490 DYNHEEDGGFE 500
>At4g26630 unknown protein
Length = 763
Score = 37.0 bits (84), Expect = 0.016
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 7/171 (4%)
Query: 162 EEEVEADDEVQEDEAQEDD-NKDLGSATTIDPDEIDEIYRDGG-LEGLRSGGDARIVAVQ 219
+ +++ DDE E E +E + K+ +A T +E E+ +D G E DA Q
Sbjct: 55 DAQIKKDDEKAETEDKESEVKKNEDNAETQKMEEKVEVTKDEGQAEATNMDEDADGKKEQ 114
Query: 220 GGDGISPEEVAVKNNQPEKKESFGPNSNSNSLSL-MAALNSVAEQKEQLRDIIDAGYSLE 278
DG+S E+ +K N K ++ + + + + KE ++ D +
Sbjct: 115 TDDGVSVEDTVMKENVESKDNNYAKDDEKETKETDITEADHKKAGKEDIQHEADKANGTK 174
Query: 279 EIEGWMENLKADG-ILSKDKQI-MDKNIQNQEKRYSVIGFSFNSKDLIQNN 327
+G ++K +G ++ +DK MD+ ++N ++ V K+ + N
Sbjct: 175 --DGNTGDIKEEGTLVDEDKGTDMDEKVENGDENKQVENVEGKEKEDKEEN 223
>At1g76780 putative heat shock protein
Length = 1871
Score = 36.6 bits (83), Expect = 0.021
Identities = 35/149 (23%), Positives = 63/149 (41%), Gaps = 20/149 (13%)
Query: 159 NSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGGDARIVAV 218
N + +V DDE+ E E +++ + + ++ DE+D+I G + R D ++ +
Sbjct: 256 NIDRTQVVGDDEIAETEKNDEEFE----SDKLEADEVDKINEGGNTKVRRHSEDRNLIKL 311
Query: 219 QGGDGISPEEVAVKNNQPEKKESFGPNSNSNSLSLMAALNSVAEQKEQLRDIIDAGYSLE 278
Q + + KE G + N L+ AE + DI+ G +E
Sbjct: 312 Q------------EKEEQHSKEQKGHSKEENMKELVEEKTPEAETTIR-NDILGPGQEIE 358
Query: 279 EIEGWMENLKADGILSKDKQ-IMDKNIQN 306
E ++ L K+KQ I+ K I+N
Sbjct: 359 VPE--VDTLGKTSDEGKEKQNIVKKEIKN 385
Score = 29.6 bits (65), Expect = 2.5
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 127 GGTSFIILVEKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGS 186
G + + +E++ E H +P T N E+EE + E +E EA + + G
Sbjct: 1246 GSSRKVQTIEEESEKHKEQ--NKIPETSNPEVNEEDEERVVEKETKEVEAHVQELE--GK 1301
Query: 187 ATTIDPDEIDEIYRDGGLEGLRSGGDAR-IVAVQGGDGISPEEVAVKNNQPEKKESFGPN 245
D+ + + G +G+ + R + DGI + K +P++K+S
Sbjct: 1302 TENCKDDDGEGRREERGKQGMTAENMLRQRFKTKSDDGIVRKIQETKEEEPDEKKS--QE 1359
Query: 246 SNSNSLSLMA 255
S+S+ + L+A
Sbjct: 1360 SSSHVVKLVA 1369
Score = 27.7 bits (60), Expect = 9.7
Identities = 38/162 (23%), Positives = 65/162 (39%), Gaps = 9/162 (5%)
Query: 156 KVYNSEEEEVEADDEVQEDEA---QEDDNKDLGSATTIDPDEIDE-IYRDGGL-EGLRSG 210
K+ EEEE E ++ V EA +E + +L +IDE I + GL + +
Sbjct: 59 KIEEEEEEEEEEEERVDVSEAEHKEETEKGELKDDYLEKSHQIDERIEEEKGLADSNKES 118
Query: 211 GDARIVAVQGGDGISPEEVAVKNNQPEKKESFGPNSNSNSLSLMAALNSVAEQKEQLRDI 270
D+ + +G E Q K+ S+ + A + EQ+ D+
Sbjct: 119 VDSSLRKPPDIEGRECHEQTRHEEQENNKQLVQAESDDSDDFGSRAFEEIEEQES---DV 175
Query: 271 IDAGYSLEEIEGWMENLKADGILSKDKQIMDKNIQNQEKRYS 312
+D + +E M + DG L K + I + N+E + S
Sbjct: 176 LDRTSTSGAMEKEMTDDVGDG-LRKVQGIEEPERHNEESKIS 216
>At5g25590 unknown protein (At5g25590)
Length = 775
Score = 36.2 bits (82), Expect = 0.027
Identities = 18/34 (52%), Positives = 24/34 (69%), Gaps = 1/34 (2%)
Query: 146 VVEDM-PSTPVKVYNSEEEEVEADDEVQEDEAQE 178
VVE+M P TP KV EEE+ E D+E +E+E +E
Sbjct: 256 VVEEMEPKTPEKVEEEEEEDEEEDEEEEEEEEEE 289
>At4g01590 unknown protein
Length = 200
Score = 36.2 bits (82), Expect = 0.027
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 161 EEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGL 204
E+EE E D+EV E E +E DN D D D+ D D GL
Sbjct: 152 EKEEGEDDEEVVESEGEESDNGDYDQNQDFDDDDDDYNNEDDGL 195
>At4g00830 unknown protein
Length = 495
Score = 36.2 bits (82), Expect = 0.027
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 138 DVEAHDYGVVED-MPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEID 196
D E Y +ED + V+ Y EEEE + DD+V A+E + +D G D +++
Sbjct: 12 DFEEGSYSEMEDEVEEEQVEEYEEEEEEDDDDDDVGNQNAEEREVEDYGDTKGGDMEDVQ 71
Query: 197 E 197
E
Sbjct: 72 E 72
Score = 29.3 bits (64), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 136 EKDVEAHDYGVVEDMPSTPVKVYNSEEEEVE--------ADDEVQEDEAQEDDNKDLGSA 187
E+ VE ++ ED V N+EE EVE ++VQE+ A++DDN
Sbjct: 27 EEQVEEYEEEEEEDDDDDDVGNQNAEEREVEDYGDTKGGDMEDVQEEIAEDDDNHI--DI 84
Query: 188 TTIDPDE 194
T D DE
Sbjct: 85 ETADDDE 91
>At2g07670 putative non-LTR retrolelement reverse transcriptase
Length = 913
Score = 36.2 bits (82), Expect = 0.027
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 63 VWIRLWQVPLGLWNEAFFAAIGNKLGTFVLADTPNVLRHRADFARVLVRMN 113
+W+RL +PL L++ + I LG V D + RA FAR+ + ++
Sbjct: 141 IWVRLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVD 191
>At5g23420 unknown protein
Length = 241
Score = 35.4 bits (80), Expect = 0.046
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 123 AVDVGGTSFIILVEKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNK 182
A +GG + L E++ + V D + YN E +AD+E +++E Q DD
Sbjct: 145 AAKIGGEKWKSLTEEEKK-----VYLDKAAELKAEYNKSLESNDADEEEEDEEKQSDDVD 199
Query: 183 DLGSATTIDPDEIDE 197
D D DE++E
Sbjct: 200 DAEEKQVDDDDEVEE 214
Score = 30.4 bits (67), Expect = 1.5
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 1/53 (1%)
Query: 148 EDMPSTPVKVYNSEEEEVEADDEVQEDEAQE-DDNKDLGSATTIDPDEIDEIY 199
ED V ++EE++V+ DDEV+E E + DD+K + +EI + Y
Sbjct: 189 EDEEKQSDDVDDAEEKQVDDDDEVEEKEVENTDDDKKEAEGKEEEEEEILDDY 241
>At1g55860 ubiquitin-protein ligase 1, putative
Length = 3891
Score = 34.7 bits (78), Expect = 0.079
Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 23/209 (11%)
Query: 124 VDVGGTSFIILVEKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKD 183
VD ++F V+ D+ + + + +P+ N+E +EA + V+ DE E+ + D
Sbjct: 2751 VDDPDSNFQPSVDVDMSSDGAEGNQSVQPSPLDGDNNELSSMEATENVRNDEQVEEGSLD 2810
Query: 184 LGSATTIDPDEIDEIYRDGGLEGLRSGGDARIVAVQGGDGISP---EEVAVKNNQPEKKE 240
G A + + ID + + E LR A ++A Q + P E V + PE
Sbjct: 2811 -GRAPEV--NAIDPTFLEALPEDLR----AEVLASQQAQSVQPPTYEPPPVDDIDPEFLA 2863
Query: 241 SFGPNSNSNSLSLMAALNSVAEQKEQLRDIIDAG------------YSLEEIEGWMENLK 288
+ P+ + L+ A V + + Q D+ +A L E + L
Sbjct: 2864 ALPPDIQTEVLAQQRAQRMVQQSQGQAVDMDNASIIATLPADLREEVLLTSSEAVLAALP 2923
Query: 289 ADGILSKDKQIMDKNIQNQEKRYSVIGFS 317
+ +L++ + + D+ + + + R SV G S
Sbjct: 2924 SP-LLAEAQMLRDRAMSHYQARSSVFGSS 2951
>At1g47970 Unknown protein (T2J15.12)
Length = 198
Score = 34.7 bits (78), Expect = 0.079
Identities = 31/115 (26%), Positives = 48/115 (40%), Gaps = 13/115 (11%)
Query: 136 EKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEI 195
E D + D V++ + PV+ E+EE + D +D+ DD+ D D D+
Sbjct: 59 EDDDDDDDVQVLQSLGGPPVQSAEDEDEEGDEDGNGDDDDDDGDDDDD-------DDDDE 111
Query: 196 DEIYRDGGLEG----LRSGGDARIVAVQGGDGISPEEVAVKNNQPEKKESFGPNS 246
DE D G G +R G R + PEE V+ + E ++ NS
Sbjct: 112 DEDVEDEGDLGTEYLVRPVG--RAEDEEDASDFEPEENGVEEDIDEGEDDENDNS 164
>At5g55660 putative protein
Length = 759
Score = 34.3 bits (77), Expect = 0.10
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 18/183 (9%)
Query: 140 EAHDYGVVEDMPSTPVKVYNSEEEEVEADD----------EVQEDEAQEDDNKDLGSATT 189
E D G ++ P +++++ ++ADD V ++ + DNKD +
Sbjct: 81 EKKDVGEDKEQPEADKMDEDTDDKNLKADDGVSGVATEEDAVMKESVESADNKDAENPEG 140
Query: 190 IDPDEIDEIYRDGGLEGLRSGGDARIVAVQGGDGISPEEV-AVKNNQPEKKESFGPNSNS 248
E E +GG GD V G G +E V+N + KE N
Sbjct: 141 EQEKESKEEKLEGGKANGNEEGDTEEKLVGGDKGDDVDEAEKVENVDEDDKEEALKEKNE 200
Query: 249 NSLSLMAALNSVAEQKE-QLRDIIDAGYSLEEIEGWMENLKADGILSKDKQIMDKNIQNQ 307
L+ N E KE D ++A + E E +E+ K + SKD+ DK + +
Sbjct: 201 AELAEEEETNKGEEVKEANKEDDVEADTKVAEPE--VEDKKTE---SKDEN-EDKEEEKE 254
Query: 308 EKR 310
+++
Sbjct: 255 DEK 257
>At4g08820 putative protein
Length = 404
Score = 34.3 bits (77), Expect = 0.10
Identities = 15/51 (29%), Positives = 24/51 (46%)
Query: 63 VWIRLWQVPLGLWNEAFFAAIGNKLGTFVLADTPNVLRHRADFARVLVRMN 113
VW+RL +P+ ++ I LG + D + R FARV + +N
Sbjct: 113 VWVRLTNIPVNYYHRCLLEEIARGLGKLLKVDLNTITFGRGRFARVCIEVN 163
>At3g56860 unknown protein
Length = 478
Score = 34.3 bits (77), Expect = 0.10
Identities = 38/161 (23%), Positives = 65/161 (39%), Gaps = 13/161 (8%)
Query: 161 EEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSGGDARIVAVQG 220
EE E E +E QE+E ++DD++D D DE ++ +E + G Q
Sbjct: 44 EEVEYEEVEEEQEEEVEDDDDED-------DGDENEDQTDGNRIEAAATSGSGN----QE 92
Query: 221 GDGISPEEVAVKNNQPEKKESFGPNSNSNSLSLMAALNSVAEQKEQLRDIIDAGYSLE-E 279
D P + ++ E+ S + + + + VA++ R I G + +
Sbjct: 93 DDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTK 152
Query: 280 IEGWMENLKADGILSKDKQIMDKNIQNQEKRYSVIGFSFNS 320
E +E K G + K + DK I + K Y I + S
Sbjct: 153 TETLIEAFKQYGEIEDCKAVFDK-ISGKSKGYGFILYKSRS 192
>At4g25340 unknown protein
Length = 477
Score = 33.9 bits (76), Expect = 0.13
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 25/167 (14%)
Query: 155 VKVYNSEEEEVEADDE----VQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRSG 210
++ Y +E++ E D++ + E++EDD+ + S DE ++ + D LE R+
Sbjct: 95 LEYYQDDEDDYEHDEDDSDGIDVGESEEDDSCEYDSEEDEQLDEFED-FLDSNLERYRNA 153
Query: 211 GDARIVAVQGGDGISPEEVAVKNN---QPEKKE--SFGPNSNSNSLSLMAALNSVAEQKE 265
+ + + I EE K+N Q +KK S G N+ +++ A V E ++
Sbjct: 154 AAPKSGVII--EEIEDEEKPAKDNKAKQTKKKSQASEGENAKKQIVAIEGAHVPVLESED 211
Query: 266 QLRD--IIDAGYSLEEIEGWMENLKADGILSKDKQIMDKNIQNQEKR 310
+ D I G S E +EN S +K ++D + Q K+
Sbjct: 212 EDEDGLPIPKGKSSE-----VEN------ASGEKMVVDNDEQGSNKK 247
>At4g24230 unknown protein
Length = 364
Score = 33.9 bits (76), Expect = 0.13
Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 141 AHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYR 200
+ +Y + E++ + S+ E E+ V + ++ K G +E+ E+ R
Sbjct: 117 SENYVIAEEVILVRGQDEQSDSAEAESISSVSPENVVAEEIKSQGQ------EEVTELGR 170
Query: 201 DGGLEGLRSGGDARIVAVQGGDGISPEEVAVK--NNQPEKKESFGPNSNSNSLSLMAALN 258
G +E SGGD + EEV V+ +N E+ ++ N L++ +
Sbjct: 171 SGCVENEESGGDVLVA--------ESEEVRVEKSSNMVEESDAEAENEEKTELTIEEDDD 222
Query: 259 SVAEQKEQLRDIIDAGYSLEEIEGWMENLKAD 290
++ +L A +L E G E + A+
Sbjct: 223 WEGIERSELEKAFAAAVNLLEESGKAEEIGAE 254
>At3g43060 putative protein
Length = 585
Score = 33.9 bits (76), Expect = 0.13
Identities = 33/129 (25%), Positives = 56/129 (42%), Gaps = 17/129 (13%)
Query: 125 DVGGTSFIILVEKDVEAHDYGVVEDMPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDL 184
D+GG+ F +++ + + G E+ V + E+V+A DE E E DN ++
Sbjct: 437 DIGGSGFGNEEQEEDASDEEGAKEENDDEMAGVEEEDAEQVDATDE----EGAEGDNDEM 492
Query: 185 GSATTIDPDEIDEIYRDG------GLEGLRSGGDA--RIVAVQGGDGIS-PEEVAV---- 231
+++D +G EG G DA R +G D ++ EEVA
Sbjct: 493 AGVEEETSEKVDATDEEGAEEEASNREGPEEGDDASNREGVEEGDDEMAEKEEVAEISSG 552
Query: 232 KNNQPEKKE 240
K P+K++
Sbjct: 553 KKTSPKKRK 561
>At4g14140 (cytosine-5-)-methyltransferase
Length = 1519
Score = 33.5 bits (75), Expect = 0.18
Identities = 23/73 (31%), Positives = 38/73 (51%), Gaps = 9/73 (12%)
Query: 149 DMPSTPVKVYNSEE---EEVEADDEVQEDEAQEDDNKDLGSATTIDPDEID------EIY 199
++PS + N EE EEVE +DE +ED+ +E++ + + + P +I EI
Sbjct: 632 EVPSEAINAENVEEEELEEVEEEDENEEDDPEENELEAVEIQNSPTPKKIKGISEDMEIK 691
Query: 200 RDGGLEGLRSGGD 212
DG + G S G+
Sbjct: 692 WDGEILGKTSAGE 704
>At3g58440 putative protein
Length = 601
Score = 33.5 bits (75), Expect = 0.18
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 150 MPSTPVKVYNSEEEEVEADDEVQEDEAQEDDNKDLGSATTIDPDEIDEIYRDGGLEGLRS 209
+P PVK+ +S+E+ + DD+ D+A E+ + D ++ D DE+ L + +
Sbjct: 139 VPLEPVKIISSQEKLDDDDDDC--DDASEESSDDGDASQEYTDDNDDEVCDISRLNLVNA 196
Query: 210 GGDARIVAVQGGDGISPE-EVAVKNNQPEKKESFGPNSNSNSLSLMAALNSVAEQKEQLR 268
+A +++ + + E EV+ N K+ ++S L+ A S EQ ++ R
Sbjct: 197 IENAFYTSIRSCNSLVAETEVSNDENDDAPKKDVDDEASSLVLNDSARNGSSIEQVKKTR 256
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,485,261
Number of Sequences: 26719
Number of extensions: 398551
Number of successful extensions: 3543
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 2603
Number of HSP's gapped (non-prelim): 576
length of query: 347
length of database: 11,318,596
effective HSP length: 100
effective length of query: 247
effective length of database: 8,646,696
effective search space: 2135733912
effective search space used: 2135733912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0173b.2