BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0173a.1
(217 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05550 putative non-LTR retroelement reverse transcriptase 86 1e-17
At2g19100 putative non-LTR retroelement reverse transcriptase 79 1e-15
At3g44650 putative protein 79 2e-15
At2g28980 putative non-LTR retroelement reverse transcriptase 79 2e-15
At2g23880 putative non-LTR retroelement reverse transcriptase 79 2e-15
At3g25485 unknown protein 78 3e-15
At2g18820 putative non-LTR retroelement reverse transcriptase 77 9e-15
At2g01550 putative non-LTR retroelement reverse transcriptase 77 9e-15
At1g47850 hypothetical protein 76 2e-14
At2g45230 putative non-LTR retroelement reverse transcriptase 75 3e-14
At1g31030 F17F8.5 75 3e-14
At2g17910 putative non-LTR retroelement reverse transcriptase 71 4e-13
At1g10160 putative reverse transcriptase 70 9e-13
At2g05200 putative non-LTR retroelement reverse transcriptase 70 1e-12
At2g15540 putative non-LTR retroelement reverse transcriptase 69 2e-12
At4g15590 reverse transcriptase like protein 69 2e-12
At4g09710 RNA-directed DNA polymerase -like protein 68 4e-12
At4g02490 67 7e-12
At2g07650 putative non-LTR retrolelement reverse transcriptase 67 7e-12
At2g41580 putative non-LTR retroelement reverse transcriptase 65 3e-11
>At2g05550 putative non-LTR retroelement reverse transcriptase
Length = 977
Score = 86.3 bits (212), Expect = 1e-17
Identities = 48/128 (37%), Positives = 72/128 (55%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
KV EDK ML T EEI VV + +++LGP G+ F++ WDII ++ + F
Sbjct: 555 KVAEEDKGMLTTEVTKEEIKRVVFSMPKDKSLGPDGYRTEFYKATWDIIGEEFVLAIKSF 614
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+E G L +G+N +ALIPKK + YRPIS IY +I+K + R ++P ++
Sbjct: 615 FEKGFLPKGVNSTILALIPKKLEEIEMKDYRPISCCNVIYKVISKIIANRLKRLLPNFIA 674
Query: 209 WNQFSFTK 216
NQ +F +
Sbjct: 675 GNQSAFVQ 682
>At2g19100 putative non-LTR retroelement reverse transcriptase
Length = 1447
Score = 79.3 bits (194), Expect = 1e-15
Identities = 42/123 (34%), Positives = 70/123 (56%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
+ +L T+EEI +V+ + +++ GP GF FF+ W+I+ ++ + F+ G
Sbjct: 853 EHELLTRVVTAEEIKKVLFSMPNDKSPGPDGFTSEFFKATWEILGNEFILAIQSFFAKGF 912
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
L +G+N +ALIPKKK + + YRPIS IY +I+K + R +V P ++ NQ +
Sbjct: 913 LPKGINTTILALIPKKKEAKEMKDYRPISCCNVIYKVISKIIANRLKLVPPKFIAGNQSA 972
Query: 214 FTK 216
F K
Sbjct: 973 FVK 975
>At3g44650 putative protein
Length = 762
Score = 79.0 bits (193), Expect = 2e-15
Identities = 42/120 (35%), Positives = 69/120 (57%)
Query: 97 MLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVE 156
ML ++EEI +V+ + +++ GP GF FF+E W+I+ + + F+ G L +
Sbjct: 1 MLTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPK 60
Query: 157 GLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTK 216
G+N +ALIPKK + + YRPIS +Y +I+K L R +++P ++ NQ SF K
Sbjct: 61 GVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVK 120
>At2g28980 putative non-LTR retroelement reverse transcriptase
Length = 1529
Score = 79.0 bits (193), Expect = 2e-15
Identities = 44/128 (34%), Positives = 68/128 (52%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
+ V D+++L T EEI +V+ A N++ GP G+ FF+ W + D + F
Sbjct: 737 RCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSF 796
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+ G L +GLN +ALIPKK + YRPIS +Y +I+K L R +++P +
Sbjct: 797 FVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFIL 856
Query: 209 WNQFSFTK 216
NQ +F K
Sbjct: 857 QNQSAFVK 864
>At2g23880 putative non-LTR retroelement reverse transcriptase
Length = 1216
Score = 79.0 bits (193), Expect = 2e-15
Identities = 42/124 (33%), Positives = 68/124 (53%)
Query: 93 EDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFG 152
+D +L T EEI +V+ + +++ GP G+ F++ W+II D+++ F+ G
Sbjct: 165 DDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKG 224
Query: 153 KLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQF 212
L +G+N +ALIPKKK + YRPIS +Y I+K L R ++P + NQ
Sbjct: 225 FLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQS 284
Query: 213 SFTK 216
+F K
Sbjct: 285 AFVK 288
>At3g25485 unknown protein
Length = 979
Score = 78.2 bits (191), Expect = 3e-15
Identities = 44/124 (35%), Positives = 68/124 (54%)
Query: 93 EDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFG 152
ED+S L T EEI V+ +++ GP GF F++ W+II + + F+E G
Sbjct: 360 EDRSRLMEPVTGEEIKTVLFFMSSDKSPGPDGFTTEFYKATWEIIGAEFIVAVKSFFEKG 419
Query: 153 KLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQF 212
L +G+N +ALIPKK + + YRPIS IY +I+K + R ++P ++ NQ
Sbjct: 420 FLPKGVNSTILALIPKKFETKEMKDYRPISCCNVIYKVISKLIAKRLKEILPQFIAGNQS 479
Query: 213 SFTK 216
+F K
Sbjct: 480 AFVK 483
>At2g18820 putative non-LTR retroelement reverse transcriptase
Length = 1412
Score = 76.6 bits (187), Expect = 9e-15
Identities = 39/126 (30%), Positives = 68/126 (53%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
+ + ++++L T E+ +V + N++ GP G+ FFRE W +I ++ F
Sbjct: 706 RYSLHEQNLLVAEITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSF 765
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+ +G L +GLN +ALIPK+ + + YRPIS +Y I+K L R ++P ++
Sbjct: 766 FTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIA 825
Query: 209 WNQFSF 214
NQ +F
Sbjct: 826 PNQSAF 831
>At2g01550 putative non-LTR retroelement reverse transcriptase
Length = 1449
Score = 76.6 bits (187), Expect = 9e-15
Identities = 41/123 (33%), Positives = 69/123 (55%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
+K ML + +++EI + + +++ GP G+ F++ WDII + + F+E G
Sbjct: 860 EKDMLTASVSAKEIRGALFSMPNDKSPGPDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGF 919
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
L +G+N +ALIPKK + + YRPIS IY +I+K + R V+P ++ NQ +
Sbjct: 920 LPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSA 979
Query: 214 FTK 216
F K
Sbjct: 980 FVK 982
>At1g47850 hypothetical protein
Length = 799
Score = 75.9 bits (185), Expect = 2e-14
Identities = 44/123 (35%), Positives = 64/123 (51%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
D+ ML TSEE +V+ A N+ GP G+ FF+ W I D + F+ G
Sbjct: 18 DQDMLTREVTSEENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGF 77
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
L +GLN +ALIPKK + YRPIS IY +I+K + R +++P + NQ +
Sbjct: 78 LPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSA 137
Query: 214 FTK 216
F +
Sbjct: 138 FVR 140
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 75.1 bits (183), Expect = 3e-14
Identities = 38/115 (33%), Positives = 63/115 (54%)
Query: 103 TSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVEGLNLKF 162
T EE+ + + ++ GP G N +++FW+ + D + ++ F+ G + EG+N
Sbjct: 429 TKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTN 488
Query: 163 IALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTKG 217
I LIPK E ++ +RPISL IY +I K + R ++P L+S Q +F KG
Sbjct: 489 ICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKG 543
>At1g31030 F17F8.5
Length = 872
Score = 74.7 bits (182), Expect = 3e-14
Identities = 41/123 (33%), Positives = 68/123 (54%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
D ML +SEEI V+ + +++ GP G+ F++ WDII + F++ G
Sbjct: 92 DNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGF 151
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
L +G+N +ALIPKK + + YRPIS +Y +I+K + R +++P ++ NQ +
Sbjct: 152 LPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSA 211
Query: 214 FTK 216
F K
Sbjct: 212 FVK 214
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 71.2 bits (173), Expect = 4e-13
Identities = 43/126 (34%), Positives = 65/126 (51%)
Query: 89 KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEF 148
KV E L T E++ V + + A GP GF +FF++ WD++K ++ F
Sbjct: 393 KVTSEMNHNLIQEVTELEVYNAVFSINKESAPGPDGFTALFFQQHWDLVKHQILTEIFGF 452
Query: 149 YEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLS 208
+E G L + N I LIPK + +S RPISL +Y +I+K LT R +P ++S
Sbjct: 453 FETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVS 512
Query: 209 WNQFSF 214
Q +F
Sbjct: 513 TTQSAF 518
>At1g10160 putative reverse transcriptase
Length = 1118
Score = 70.1 bits (170), Expect = 9e-13
Identities = 40/122 (32%), Positives = 63/122 (50%)
Query: 96 SMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLV 155
S L + EEI +V+ + N+A GP GF FF E W I+K ++ EF+ G L
Sbjct: 441 SQLTTIPSEEEITQVLFSMPRNKAPGPDGFPVEFFIEAWAIVKSSVVAAIREFFISGNLP 500
Query: 156 EGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFT 215
G N I LIPK + ++ +RP++ +IY +I + ++ R + + + NQ F
Sbjct: 501 RGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAVQANQVGFI 560
Query: 216 KG 217
KG
Sbjct: 561 KG 562
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 69.7 bits (169), Expect = 1e-12
Identities = 40/124 (32%), Positives = 62/124 (49%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
D L EE+ + V + + ++A GP GF F+ +W II D+ + F+
Sbjct: 315 DNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKN 374
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
+N I LIPK V+ YRPI+L Y ++AK +T R +++P L+S NQ +
Sbjct: 375 FPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSA 434
Query: 214 FTKG 217
F G
Sbjct: 435 FVPG 438
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 68.9 bits (167), Expect = 2e-12
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 94 DKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGK 153
+KS+ +V + EE+ + + + ++A GP G F++ +WD+ D++KL F+ G
Sbjct: 368 NKSLTKV-ISPEEVKRALFSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGF 426
Query: 154 LVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFS 213
E LN I LIPK + ++ +RPISL Y +I+K L+ R ++P L+S Q +
Sbjct: 427 FDERLNETNICLIPKTERPRKMAEFRPISLCNVSYKVISKVLSSRLKRLLPELISETQSA 486
Query: 214 F 214
F
Sbjct: 487 F 487
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/136 (28%), Positives = 72/136 (52%)
Query: 82 LTGDGF*KVKVEDKSMLEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDM 141
L +GF ++ E+K+ L FT +E+ V + +A GP G+ +F+++ W+ + + +
Sbjct: 224 LPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESV 283
Query: 142 MKLFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHM 201
K +EF+E G L + N + L+ K E ++ +RP+SL ++ +I K + R
Sbjct: 284 SKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKN 343
Query: 202 VMPYLLSWNQFSFTKG 217
V+ L+ Q SF G
Sbjct: 344 VISKLIGPAQASFIPG 359
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 67.8 bits (164), Expect = 4e-12
Identities = 41/112 (36%), Positives = 59/112 (52%)
Query: 106 EIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVEGLNLKFIAL 165
EI E + + ++A GP GF+ FF +WDII+ D+ + F+ L LN + L
Sbjct: 373 EIKEALFSISADKAPGPDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTL 432
Query: 166 IPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTKG 217
IPK VS YRPI+L Y ++AK LT R + L+S +Q +F G
Sbjct: 433 IPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFVPG 484
>At4g02490
Length = 657
Score = 67.0 bits (162), Expect = 7e-12
Identities = 34/101 (33%), Positives = 57/101 (55%)
Query: 117 NRALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVEGLNLKFIALIPKKKILEAVS 176
N+A GP GF FF E W I+K+ + EF+ G L++G N I LIPK + ++
Sbjct: 9 NKAPGPDGFPVEFFLEAWPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKVPGADQLN 68
Query: 177 VYRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTKG 217
++RP++ +IY +I + ++ R ++ + + NQ F KG
Sbjct: 69 LFRPVACCTTIYKVITRLISKRLNLFIDQAVQSNQVGFIKG 109
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 67.0 bits (162), Expect = 7e-12
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 118 RALGPYGFNFIFFREFWDIIKDDMMKLFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSV 177
+A GP GF +F+++ WDI+ D + + ++F+ GKL EG N + LI K E ++
Sbjct: 5 KAPGPDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPERITQ 64
Query: 178 YRPISLTGSIYILIAKDLT*RFHMVMPYLLSWNQFSFTKG 217
+RPISL ++ I K L R V+ L+ Q SF G
Sbjct: 65 FRPISLCNVLFKTITKTLVMRLKRVISKLIRPAQASFISG 104
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 65.1 bits (157), Expect = 3e-11
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 85 DGF*KVKVEDKSM-LEVAFTSEEIWEVVIACDGNRALGPYGFNFIFFREFWDIIKDDMMK 143
+GF K ED + L +EI++ V + + A GP GF +FF+ W ++K+ ++
Sbjct: 139 EGFNKRVTEDMNQDLTKKVNEQEIYKAVFSINAESAPGPDGFTALFFQRQWPLVKNQIIS 198
Query: 144 LFVEFYEFGKLVEGLNLKFIALIPKKKILEAVSVYRPISLTGSIYILIAKDLT*RFHMVM 203
F++ G L E N + LIPK ++ RPISL +Y +I+K L+ R +
Sbjct: 199 DIELFFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYL 258
Query: 204 PYLLSWNQFSF 214
P ++S Q +F
Sbjct: 259 PVIVSPTQSAF 269
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.346 0.159 0.520
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,435,519
Number of Sequences: 26719
Number of extensions: 168298
Number of successful extensions: 644
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 50
length of query: 217
length of database: 11,318,596
effective HSP length: 95
effective length of query: 122
effective length of database: 8,780,291
effective search space: 1071195502
effective search space used: 1071195502
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0173a.1