BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0172.11
         (148 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g70600 60S ribosomal protein L27A                                  260  2e-70
At1g23290 60s ribosomal protein l27a.                                 254  1e-68
At1g12960 60S ribosomal protein L27a, putative                        127  2e-30
At5g17650 glycine/proline-rich protein                                 35  0.011
At5g50760 putative protein                                             28  2.3
At1g11730 Avr9 elicitor response-like protein                          27  3.1
At3g52840 beta-galactosidase precursor - like protein                  27  4.0
At1g66260 RNA and export factor binding protein, putative              27  4.0
At3g63100 putative protein                                             27  5.2
At2g05510 putative glycine-rich protein                                27  5.2
At5g57870 eukaryotic initiation factor 4, eIF4-like protein            26  6.8
At4g16380 unknown protein                                              26  6.8
At3g30820 hypothetical protein                                         26  8.9
At2g05540 putative glycine-rich protein                                26  8.9

>At1g70600 60S ribosomal protein L27A
          Length = 146

 Score =  260 bits (665), Expect = 2e-70
 Identities = 123/148 (83%), Positives = 134/148 (90%), Gaps = 2/148 (1%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
           FHKLRN+FFCP VN+DKLWSL+P++VK  A + K   P+IDVT +G+FKVLGKG LP N+
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVK--AKSTKDNVPLIDVTQHGFFKVLGKGHLPENK 118

Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
           P VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g23290 60s ribosomal protein l27a.
          Length = 146

 Score =  254 bits (649), Expect = 1e-68
 Identities = 120/148 (81%), Positives = 131/148 (88%), Gaps = 2/148 (1%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
           FHKLRN+FFCP VN+DKLWSL+P++VK  A + K   P+IDVT +G+FKVLGKG LP N+
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVK--AKSSKDNVPLIDVTQHGFFKVLGKGHLPENK 118

Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLTA 148
           P VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 119 PFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g12960 60S ribosomal protein L27a, putative
          Length = 104

 Score =  127 bits (320), Expect = 2e-30
 Identities = 74/147 (50%), Positives = 81/147 (54%), Gaps = 47/147 (31%)

Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 41

Query: 61  FHKLRNQFFCPTVNIDKLWSLLPQEVKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQ 120
           FHKLRN+F+C  VN+DKLWS+                            VLGKG LP N+
Sbjct: 42  FHKLRNKFYCQIVNLDKLWSM----------------------------VLGKGFLPENK 73

Query: 121 PVVVKAKLISKIAEKKIKENGGAVLLT 147
           PVVVKAKL+S   EKKIKE G AV+LT
Sbjct: 74  PVVVKAKLVSNTDEKKIKEAGSAVVLT 100


>At5g17650 glycine/proline-rich protein
          Length = 173

 Score = 35.4 bits (80), Expect = 0.011
 Identities = 22/56 (39%), Positives = 27/56 (47%), Gaps = 5/56 (8%)

Query: 14  HVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNQFF 69
           H+S  HG  G H  H  G G  G   H +    K+  G FGK GM  F K + +FF
Sbjct: 119 HMSHHHGHYGHHHGHGYGYGYHG---HGKFKHGKFKHGKFGKHGM--FGKHKGKFF 169


>At5g50760 putative protein
          Length = 183

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 86  VKDQAANDKSKAPVIDVTNYGYFKVLGKGVLPANQPVVVKAKLISKIAEKKIKEN 140
           ++D  +N+    P  +  ++G+F V    V P  Q +VVK KL++    K + E+
Sbjct: 38  LEDAKSNESKGKPKKESPSHGFFTVY---VGPTKQRIVVKTKLLNHPLFKNLLED 89


>At1g11730 Avr9 elicitor response-like protein
          Length = 384

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 47  KYH-PGY--FGKVGMRYFHKLRNQFFCPTVNIDKLWSLLPQEVKDQAAND 93
           KYH P Y  FG+VG +YF     QF+  + ++   + L+ Q++  + AN+
Sbjct: 260 KYHEPEYWKFGEVGNKYFRHATGQFYAISKDL-ATYILINQDLLHKYANE 308


>At3g52840 beta-galactosidase precursor - like protein
          Length = 727

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 16/59 (27%), Positives = 26/59 (43%)

Query: 8   NRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRN 66
           N   +G V      IG+H      RGN G  ++  I  +K    + G+   R++H  R+
Sbjct: 639 NTMGKGQVWVNGHNIGRHWPAYTARGNCGRCNYAGIYNEKKCLSHCGEPSQRWYHVPRS 697


>At1g66260 RNA and export factor binding protein, putative
          Length = 295

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 4   RFKKNRKKRGHVSAGHGRI-GKHRKHPGGRGNAGG 37
           R    + ++G V+AG G   G+ R + GGRGN  G
Sbjct: 231 RLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSG 265


>At3g63100 putative protein
          Length = 199

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 15/36 (41%), Positives = 18/36 (49%), Gaps = 5/36 (13%)

Query: 12  RGHVSA---GHGRIGKHRKHPGGRGN--AGGMHHHR 42
           RGH      GH R G+  +H   RG+    G HHHR
Sbjct: 96  RGHGHGHGHGHRRHGRDHRHGRDRGHHRGHGHHHHR 131


>At2g05510 putative glycine-rich protein
          Length = 127

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)

Query: 13  GHVSAGHGRIGKHRKHPGGRGNAGGMHH 40
           GH   G G  G    H GG    GG HH
Sbjct: 83  GHYGGGGGHYGGGGGHGGGGHYGGGGHH 110


>At5g57870 eukaryotic initiation factor 4, eIF4-like protein
          Length = 780

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)

Query: 11  KRGHVSAGHGRIGKHRKHPGGRGNAGGM 38
           +RG VS+G G +     +PGGR  AGG+
Sbjct: 476 RRGMVSSG-GPVSPGPVYPGGRPGAGGL 502


>At4g16380 unknown protein
          Length = 192

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 5/51 (9%)

Query: 54  GKVGMRYFHKLRNQFFCPTV--NIDKLWSLLPQEVKDQAANDKSKAPVIDV 102
           GKV M    KL+    CP     + K+    P E++DQ  ++KS   +I V
Sbjct: 34  GKVTMM---KLKVDLDCPKCYKKVKKVLCKFPSEIRDQLFDEKSNIVIIKV 81


>At3g30820 hypothetical protein
          Length = 405

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 16  SAGHGRIGKHRKHPGGRGNAGGMHHHR 42
           S GH R+G+ R+ PG + ++    HHR
Sbjct: 380 SLGH-RLGRSRRQPGEQSSSESPTHHR 405


>At2g05540 putative glycine-rich protein
          Length = 135

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 13  GHVSAGHG-RIGKHRKHPGGRGNAGGMHHHR----ILFDKYHPGYFG 54
           G+   G+G R G +R   GG GN GG + +R      +   + GY+G
Sbjct: 65  GNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGYCRYGCCYRGYYG 111


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.321    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,793,927
Number of Sequences: 26719
Number of extensions: 167603
Number of successful extensions: 445
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 21
length of query: 148
length of database: 11,318,596
effective HSP length: 90
effective length of query: 58
effective length of database: 8,913,886
effective search space: 517005388
effective search space used: 517005388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)