BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0171.3
(96 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24670 putative alliin lyase 37 0.001
At4g21270 kinesin-related protein katA 29 0.35
At1g62975 putative bHLH transcription factor (bHLH125) 28 0.78
At1g05380 unknown protein 28 0.78
At1g13970 unknown protein 28 1.0
At5g07250 membrane protein 27 1.3
At5g49520 unknown protein 27 2.3
At1g63120 membrane protein, putative 26 3.0
At4g32200 putative protein 26 3.9
At4g20730 putative protein 26 3.9
At5g28480 putative protein 25 5.1
At4g05360 putative protein 25 5.1
At5g46260 disease resistance protein-like 25 6.6
At5g10950 putative protein 25 6.6
At3g29190 terpene synthase-related protein 25 6.6
At2g33435 RRM-containing protein 25 6.6
At2g06750 hypothetical protein 25 6.6
At1g77640 hypothetical protein 25 6.6
At1g31540 disease resistance gene, putative 25 6.6
At4g38610 putative protein 25 8.6
>At4g24670 putative alliin lyase
Length = 440
Score = 37.4 bits (85), Expect = 0.001
Identities = 27/83 (32%), Positives = 40/83 (47%), Gaps = 17/83 (20%)
Query: 1 MAKLPNVFSLRHLLVLSLALNVSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETG 60
M ++P S R++LVLSLA+N S IL++L E R DS T
Sbjct: 1 MGQIPRFLSWRNMLVLSLAINFSLILKILKGDRE-----------------RGDSWDRTA 43
Query: 61 EQSIKESRVAVSSSTSSLANSTC 83
SI +S +SSL++++C
Sbjct: 44 YVSIWPVVSTTASESSSLSSASC 66
>At4g21270 kinesin-related protein katA
Length = 793
Score = 29.3 bits (64), Expect = 0.35
Identities = 17/59 (28%), Positives = 27/59 (44%), Gaps = 2/59 (3%)
Query: 22 VSFILRLLFEGEEGHDHCSCLRKERRAKIARADSNTETGEQ--SIKESRVAVSSSTSSL 78
VS +L E D C R+E+ A++A GE+ +KE ++A +SL
Sbjct: 160 VSLHEKLAKEESSTQDAIECHRREKEARVAAEKVQASLGEELDKVKEEKMAAKQKVTSL 218
>At1g62975 putative bHLH transcription factor (bHLH125)
Length = 259
Score = 28.1 bits (61), Expect = 0.78
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 45 ERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTC 83
E+R ++ + S T T +I+E ++SSS +S +S+C
Sbjct: 134 EKRNRVKKVISATTTTHSAIEECTSSLSSSAASTLSSSC 172
>At1g05380 unknown protein
Length = 1138
Score = 28.1 bits (61), Expect = 0.78
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 44 KERRAKIARADSNTETGEQSIKESRVAVSSSTSS 77
KE+ + R S+TET + K SR+ VS S SS
Sbjct: 22 KEKSDGVGRTVSSTETRQNYQKRSRMVVSDSESS 55
>At1g13970 unknown protein
Length = 504
Score = 27.7 bits (60), Expect = 1.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 52 RADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHPGGRNR 92
+ ++ + E SIK ++VA S + +TC+DH R +
Sbjct: 152 KGETYSSKNEVSIKRNQVADESHHETFKTTTCEDHQDHRKK 192
>At5g07250 membrane protein
Length = 346
Score = 27.3 bits (59), Expect = 1.3
Identities = 14/30 (46%), Positives = 19/30 (62%), Gaps = 3/30 (10%)
Query: 13 LLVLSLALNVS---FILRLLFEGEEGHDHC 39
L +LSL L ++ L +LF GE G+DHC
Sbjct: 298 LWLLSLVLLIAGFVVALLMLFRGENGNDHC 327
>At5g49520 unknown protein
Length = 399
Score = 26.6 bits (57), Expect = 2.3
Identities = 14/55 (25%), Positives = 32/55 (57%), Gaps = 3/55 (5%)
Query: 33 EEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLAN-STCKDH 86
EE H H +++++ +I ++ E ++ ++ ++ +SS+S++AN T DH
Sbjct: 6 EEDHHHQQ--QQQQQKEIKNTETKIEQEQEQEQKQEISQASSSSNMANLVTSSDH 58
>At1g63120 membrane protein, putative
Length = 317
Score = 26.2 bits (56), Expect = 3.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 15 VLSLALNVSFILRLLFEGEEGHDHC 39
V+ L + ++ L +LF+GE G+ HC
Sbjct: 277 VVLLVVGLTVALVMLFKGENGNKHC 301
>At4g32200 putative protein
Length = 1552
Score = 25.8 bits (55), Expect = 3.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 EEGHDHCSCLRKERRAKIARADSNTETGEQSIK 65
E G C+ LR +R AK+AR + +K
Sbjct: 1252 EHGERECNRLRNDRAAKVARTTKKAQARLDRVK 1284
>At4g20730 putative protein
Length = 824
Score = 25.8 bits (55), Expect = 3.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 33 EEGHDHCSCLRKERRAKIARADSNTETGEQSIK 65
E G C+ LR +R AK+AR + +K
Sbjct: 684 EHGERECNRLRNDRAAKVARTTKKAQARLDRVK 716
>At5g28480 putative protein
Length = 1248
Score = 25.4 bits (54), Expect = 5.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 32 GEEGHDHCSCLRKERRAKIARAD 54
GE G D C L K ++ KI+ +D
Sbjct: 403 GERGKDGCQILLKTKKRKISHSD 425
>At4g05360 putative protein
Length = 735
Score = 25.4 bits (54), Expect = 5.1
Identities = 12/44 (27%), Positives = 26/44 (58%)
Query: 39 CSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANST 82
C+ L KE+ K +DS ++ + ++ VA ++ SS+A+++
Sbjct: 393 CANLMKEKEKKFIMSDSEIDSDDGEELKNLVAFTTFESSIASAS 436
>At5g46260 disease resistance protein-like
Length = 1205
Score = 25.0 bits (53), Expect = 6.6
Identities = 15/37 (40%), Positives = 23/37 (61%)
Query: 46 RRAKIARADSNTETGEQSIKESRVAVSSSTSSLANST 82
R +I R+ S EQ+IKESR+AV + + A+S+
Sbjct: 44 RDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSS 80
>At5g10950 putative protein
Length = 395
Score = 25.0 bits (53), Expect = 6.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 33 EEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSS 73
E+G L+KER I D+ +E+ E S++E SS
Sbjct: 72 EDGDKETLDLKKERWELIEEDDAESESDEISLQEESAGESS 112
>At3g29190 terpene synthase-related protein
Length = 519
Score = 25.0 bits (53), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 14 LVLSLALNVSFILRLLFEGEEGHDHCSCLRKER 46
LVL LA+ V ++ + + +EG+ H KE+
Sbjct: 476 LVLKLAMGVGLMISITYSEDEGYTHPEGKIKEK 508
>At2g33435 RRM-containing protein
Length = 979
Score = 25.0 bits (53), Expect = 6.6
Identities = 15/62 (24%), Positives = 28/62 (44%), Gaps = 12/62 (19%)
Query: 33 EEGHDHCSCLRKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHPGGRNR 92
E+GHD + +R+E R K S ++ A S S +++ K+ P G +
Sbjct: 378 EKGHDRSTKVRREERVK------------DSSRKKEDATSGSREERVDNSTKEDPVGAAQ 425
Query: 93 VI 94
++
Sbjct: 426 LL 427
>At2g06750 hypothetical protein
Length = 435
Score = 25.0 bits (53), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 32 GEEGHDHCSCLRKERRAKIARAD 54
GE G D C L K ++ KI +D
Sbjct: 305 GERGKDGCQILLKTKKRKITHSD 327
>At1g77640 hypothetical protein
Length = 244
Score = 25.0 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 59 TGEQSIKESRVAVSSSTSSLANSTCKD 85
T S+ S + SSSTS+L + +CK+
Sbjct: 12 TSSSSLSHSSSSSSSSTSALRHQSCKN 38
>At1g31540 disease resistance gene, putative
Length = 776
Score = 25.0 bits (53), Expect = 6.6
Identities = 15/37 (40%), Positives = 23/37 (61%)
Query: 46 RRAKIARADSNTETGEQSIKESRVAVSSSTSSLANST 82
R +I R+ S EQ+IKESR+AV + + A+S+
Sbjct: 44 RDNEIERSHSLWPDLEQAIKESRIAVVVFSKNYASSS 80
>At4g38610 putative protein
Length = 1083
Score = 24.6 bits (52), Expect = 8.6
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 43 RKERRAKIARADSNTETGEQSIKESRVAVSSSTSSLANSTCKDHPGGRNRVINL 96
R E K A NTE G S VSS +SS ST + H IN+
Sbjct: 961 RSESALKPAAPIGNTEPGTLP---SGAGVSSPSSSTPASTTRRHSSRSRSAINI 1011
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,945,433
Number of Sequences: 26719
Number of extensions: 60294
Number of successful extensions: 276
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 29
length of query: 96
length of database: 11,318,596
effective HSP length: 72
effective length of query: 24
effective length of database: 9,394,828
effective search space: 225475872
effective search space used: 225475872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0171.3