BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0166.5
(1017 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61330 copia-type polyprotein 720 0.0
At1g48710 hypothetical protein 715 0.0
At1g58140 hypothetical protein 714 0.0
At3g60170 putative protein 712 0.0
At2g15650 putative retroelement pol polyprotein 649 0.0
At3g59720 copia-type reverse transcriptase-like protein 619 e-177
At1g32590 hypothetical protein, 5' partial 619 e-177
At2g20460 putative retroelement pol polyprotein 600 e-171
At2g16000 putative retroelement pol polyprotein 587 e-168
At1g70010 hypothetical protein 584 e-167
At1g31210 putative reverse transcriptase 583 e-166
At3g25450 hypothetical protein 581 e-166
At2g05390 putative retroelement pol polyprotein 538 e-153
At1g37110 529 e-150
At1g26990 polyprotein, putative 506 e-143
At4g17450 retrotransposon like protein 494 e-139
At5g35820 copia-like retrotransposable element 492 e-139
At4g03810 putative retrotransposon protein 484 e-136
At2g21460 putative retroelement pol polyprotein 482 e-136
At2g19840 copia-like retroelement pol polyprotein 474 e-133
>At3g61330 copia-type polyprotein
Length = 1352
Score = 720 bits (1858), Expect = 0.0
Identities = 395/996 (39%), Positives = 569/996 (56%), Gaps = 40/996 (4%)
Query: 20 LALEETRREKSLEKGSI----GDGKIPVINDVLLVEGLFHNLLSISQIANKGYDVIFNQT 75
+AL + + + KG+I +G I++V + + N+LS+ Q+ KGYD+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422
Query: 76 GCKAVSQTNGSVLFSGKRKNYIYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKI 135
Q + + KN ++ + ++Q +K M +E W+W R GH + +
Sbjct: 423 NLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFGGL 480
Query: 136 SQLSKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVK 195
LS+ ++RGLP + + ++ +CE C GK K F ++ +PLEL+H D+ GP+K
Sbjct: 481 ELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIK 539
Query: 196 TESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGG 255
+S+G Y L+ +DD+SR TWV FL+ K E IF F V+KE + T+RSD GG
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGG 599
Query: 256 EFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEA 315
EF +K F + GI + PR+PQQNGVVERKNRT+ EMAR+M++ + K LWAEA
Sbjct: 600 EFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEA 659
Query: 316 INTAYYIHNIISIRPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALK 375
+ A Y+ N + + KTP E GR+P +S+ FGS + E+ K D K+ K
Sbjct: 660 VACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEK 719
Query: 376 CYFLGYSERSKGFRIYN------IIHQTVEESIQIRFDGKLGSEKSKLFERFADLSIDCS 429
F+GY SKG+++YN II + + + +D E F F
Sbjct: 720 YIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHF-------- 771
Query: 430 EANQPKNSSEDVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKP 489
E ++P+ + E+ E + TS Q+++ + + R RS+ +
Sbjct: 772 EEDEPEPTREEPPSEEPTTPPTSPTSSQIEES--------------SSERTPRFRSIQEL 817
Query: 490 SEETL----LSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFH 545
E T L+L L + EP +A+E K W M EE+ KND W L S P G
Sbjct: 818 YEVTENQENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHK 877
Query: 546 VIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVN 605
IG KWV++ K N KGEV R KARLVA+GYSQ+ GIDY E F+PVARLE +RL+IS +
Sbjct: 878 AIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQ 937
Query: 606 HNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYER 665
+ +HQMDVKSAFLNG + EEVY++QP G+ D V +LKK LYGLKQAPRAW R
Sbjct: 938 NKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTR 997
Query: 666 LSSFLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFE 725
+ + + +F++ ++ L+ K DILI +YVDD+IF NPS+ +EF K M EFE
Sbjct: 998 IDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFE 1057
Query: 726 MSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEV 785
M+ +G + Y+LGI++ Q +I Q+ Y E+LKKF + D N TPM L K+E
Sbjct: 1058 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEE 1117
Query: 786 SSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTN 845
V ++ ++GSL YLT +RPDIL++V + +R+ P TH A KRIL+Y+KGT N
Sbjct: 1118 GEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVN 1177
Query: 846 LGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEA 905
GL Y TS+Y L G+ D+D+ GD +RKSTSG ++G TW SK+Q + LST EA
Sbjct: 1178 FGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEA 1237
Query: 906 EYVSAATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHSRAKHIEVKYH 964
EYV+A +C IW++N L++ L ++ I+ DN +AI+L+KNP+ H R+KHI+ +YH
Sbjct: 1238 EYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYH 1297
Query: 965 YIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFL 1000
YIR+ V K + LEYV T Q AD FTKPL + F+
Sbjct: 1298 YIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFI 1333
>At1g48710 hypothetical protein
Length = 1352
Score = 715 bits (1846), Expect = 0.0
Identities = 394/996 (39%), Positives = 567/996 (56%), Gaps = 40/996 (4%)
Query: 20 LALEETRREKSLEKGSI----GDGKIPVINDVLLVEGLFHNLLSISQIANKGYDVIFNQT 75
+AL + + + KG+I +G I++V + + N+LS+ Q+ KGYD+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422
Query: 76 GCKAVSQTNGSVLFSGKRKNYIYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKI 135
Q + + KN ++ + ++Q +K M +E W+W R GH + +
Sbjct: 423 NLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFGGL 480
Query: 136 SQLSKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVK 195
LS+ ++RGLP + + ++ +CE C GK K F ++ + LEL+H D+ GP+K
Sbjct: 481 ELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIK 539
Query: 196 TESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGG 255
+S+G Y L+ +DD+SR TWV FL+ K E IF F V+KE + T+RSD GG
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGG 599
Query: 256 EFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEA 315
EF +K F + GI + PR+PQQNGV ERKNRT+ EMAR+M++ + K LWAEA
Sbjct: 600 EFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEA 659
Query: 316 INTAYYIHNIISIRPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALK 375
+ A Y+ N + + KTP E GR+ +S+ FGS + E+ K D K+ K
Sbjct: 660 VACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEK 719
Query: 376 CYFLGYSERSKGFRIYN------IIHQTVEESIQIRFDGKLGSEKSKLFERFADLSIDCS 429
F+GY SKG+++YN II + + + +D E F F
Sbjct: 720 YIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHF-------- 771
Query: 430 EANQPKNSSEDVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKP 489
E ++P+ + E+ E + TS Q+++ + + R RS+ +
Sbjct: 772 EEDEPEPTREEPPSEEPTTPPTSPTSSQIEES--------------SSERTPRFRSIQEL 817
Query: 490 SEETL----LSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFH 545
E T L+L L + EP EA+E K W M EE+ KND W L S P G
Sbjct: 818 YEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHK 877
Query: 546 VIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVN 605
IG KWV++ K N KGEV R KARLVA+GY Q+ GIDY E F+PVARLE +RL+IS +
Sbjct: 878 TIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQ 937
Query: 606 HNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYER 665
+ +HQMDVKSAFLNG + EEVY++QP G+ D V +LKK+LYGLKQAPRAW R
Sbjct: 938 NKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTR 997
Query: 666 LSSFLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFE 725
+ + + +F++ ++ L+ K DILI +YVDD+IF NPS+ +EF K M EFE
Sbjct: 998 IDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFE 1057
Query: 726 MSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEV 785
M+ +G + Y+LGI++ Q +I Q+ Y E+LKKF M D N TPM L K+E
Sbjct: 1058 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEE 1117
Query: 786 SSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTN 845
V ++ ++GSL YLT +RPDIL++V + +R+ P TH A KRIL+Y+KGT N
Sbjct: 1118 GEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVN 1177
Query: 846 LGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEA 905
GL Y TS+Y L G+ D+D+ GD +RKSTSG ++G TW SK+Q + LST EA
Sbjct: 1178 FGLHYSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEA 1237
Query: 906 EYVSAATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHSRAKHIEVKYH 964
EYV+A +C IW++N L++ L ++ I+ DN +AI+L+KNP+ H R+KHI+ +YH
Sbjct: 1238 EYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYH 1297
Query: 965 YIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFL 1000
YIR+ V K + LEYV T Q ADIFTKPL + F+
Sbjct: 1298 YIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFI 1333
>At1g58140 hypothetical protein
Length = 1320
Score = 714 bits (1844), Expect = 0.0
Identities = 390/992 (39%), Positives = 557/992 (55%), Gaps = 64/992 (6%)
Query: 20 LALEETRREKSLEKGSI----GDGKIPVINDVLLVEGLFHNLLSISQIANKGYDVIFNQT 75
+AL + + + KG+I +G I++V + + N+LS+ Q+ KGYD+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422
Query: 76 GCKAVSQTNGSVLFSGKRKNYIYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKI 135
Q + + KN ++ + ++Q +K M +E W+W R GH + +
Sbjct: 423 NLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFGGL 480
Query: 136 SQLSKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVK 195
LS+ ++RGLP + + ++ +CE C GK K F ++ +PLEL+H D+ GP+K
Sbjct: 481 ELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIK 539
Query: 196 TESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGG 255
+S+G Y L+ +DD+SR TWV FL+ K E IF F V+KE + T+RSD GG
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGG 599
Query: 256 EFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEA 315
EF +K F + GI + PR+PQQNGV ERKNRT+ EMAR+M++ + K LWAEA
Sbjct: 600 EFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEA 659
Query: 316 INTAYYIHNIISIRPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALK 375
+ A Y+ N + + KTP E GR+P +S+ FGS + E+ K D K+ K
Sbjct: 660 VACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEK 719
Query: 376 CYFLGYSERSKGFRIYN------IIHQTVEESIQIRFDGKLGSEKSKLFERFADLSIDCS 429
F+GY SKG+++YN II + + + +D E F F
Sbjct: 720 YIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHF-------- 771
Query: 430 EANQPKNSSEDVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKP 489
E ++P+ + E+ E + TS Q+++K
Sbjct: 772 EEDKPEPTREEPPSEEPTTPPTSPTSSQIEEK---------------------------- 803
Query: 490 SEETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGT 549
EP EA+E K W M EE+ KND W L S P G IG
Sbjct: 804 --------------CEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGV 849
Query: 550 KWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNIT 609
KWV++ K N KGEV R KARLVA+GYSQ+ GIDY E F+PVARLE +RL+IS + +
Sbjct: 850 KWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWK 909
Query: 610 LHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSF 669
+HQMDVKSAFLNG + EEVY++QP G+ D V +LKK+LYGLKQAPRAW R+ +
Sbjct: 910 IHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKY 969
Query: 670 LLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMM 729
+ +F++ ++ L+ K DILI +YVDD+IF NPS+ +EF K M EFEM+ +
Sbjct: 970 FKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDI 1029
Query: 730 GELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKV 789
G + Y+LGI++ Q +I Q+ Y E+LKKF M D N TPM L K+E V
Sbjct: 1030 GLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGV 1089
Query: 790 CQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLM 849
++ ++GSL YLT +RPDIL++V + +R+ P TH A KRIL+Y+KGT N GL
Sbjct: 1090 DPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLH 1149
Query: 850 YRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVS 909
Y TS+Y L G+ D+D+ GD +RKSTSG ++G TW SK+Q + LST EAEYV+
Sbjct: 1150 YSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVA 1209
Query: 910 AATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRD 968
A +C IW++N L++ L ++ I+ DN +AI+L+KNP+ H R+KHI+ +YHYIR+
Sbjct: 1210 ATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRE 1269
Query: 969 HVQKGTLSLEYVDTDHQWADIFTKPLAEDRFL 1000
V K + LEYV T Q ADIFTKPL + F+
Sbjct: 1270 CVSKKDVQLEYVKTHDQVADIFTKPLKREDFI 1301
>At3g60170 putative protein
Length = 1339
Score = 712 bits (1837), Expect = 0.0
Identities = 393/1014 (38%), Positives = 584/1014 (56%), Gaps = 25/1014 (2%)
Query: 8 SKNWHRLSQE---ETLALEETRREKSLEKGSIG---DGKIPVINDVLLVEGLFHNLLSIS 61
SK W +E T+ L R + KGS+ +G VI +V V L +NLLS+
Sbjct: 313 SKEWFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKVNGVTQVIPEVYYVPELRNNLLSLG 372
Query: 62 QIANKGYDVIFNQTGCKAVSQTNGSVLFSGKRKNYIYKIKSSELLSQKVKCLMS---VND 118
Q+ +G ++ CK + G+++ + N ++ + +S+ + CL + ++
Sbjct: 373 QLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNSL-CLQTEEVMDK 431
Query: 119 EQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVS 178
E +W R GH + + L+ ++ GLP LK + E +C C GK ++ K
Sbjct: 432 ENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILKATKE-ICAICLTGKQHRESMSKKTSWK 490
Query: 179 TTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQV 238
++ L+L+H D+ GP+ S GK+Y L +DD++R TWV FL K E F F V
Sbjct: 491 SSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASV 550
Query: 239 QKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMA 298
+KE + +R+D GGEF + F E S GIS + TPQQNGV ERKNRT+
Sbjct: 551 EKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAV 610
Query: 299 RTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTPYELCKGRQPDISYFHPFGSTCY 358
R+M+ E + K W+EA + +I N + TP E GR+P + YF FG Y
Sbjct: 611 RSMLSERQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGY 670
Query: 359 MLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDGKLGSEKSKLF 418
+ ++ K D K+ KC FLG SE SK +R+Y+ + + + S + FD + +
Sbjct: 671 VHIPDQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQAD 730
Query: 419 ERFADLSIDCSEANQPKNSSEDVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKD 478
+++++C + + KNS E V P A AS + + + +A S P + K
Sbjct: 731 VEAKEVTLECGDEDDEKNS-EVVEPIAVASPNHVGSDNNVSSSPILAPSSPAPSPVAAKV 789
Query: 479 ----------APVRTRSMLKPSEETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQ 528
A T + E + L +++ +P D+A++DK W M+ E++
Sbjct: 790 TRERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDAVKDKIWREAMEHEIES 849
Query: 529 FTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFS 588
KN+ W L + PKGF IG KWV++ KLNE GEV + KARLVA+GY+Q GIDYTE F+
Sbjct: 850 IVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFA 909
Query: 589 PVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKL 648
PVARL+ +R +++ S N + Q+DVKSAFL+G + EEVYV+QP GF + + VYKL
Sbjct: 910 PVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKL 969
Query: 649 KKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSA 708
+K+LYGLKQAPRAWY R+ ++ L+ EF R ++TLF T +ILIV +YVDD+IF +
Sbjct: 970 RKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFTGS 1029
Query: 709 NPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCN 768
+ ++C EF K M EFEMS +G++K+FLGI++ Q G +I Q++Y E+L +F M + N
Sbjct: 1030 DKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESN 1089
Query: 769 ISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRET 828
K P+ P L K+E KV + +++ ++GSL+YLT +RPD+++ V L +RF S+PR +
Sbjct: 1090 AVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMS 1149
Query: 829 HLTAVKRILKYLKGTTNLGLMY--RKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSN 886
H A KRIL+YLKGT LG+ Y RK L F D+D+AGD +R+STSG + S
Sbjct: 1150 HWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSGFVFLMASG 1209
Query: 887 LVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVP-IYCDNTAAIS 945
+ W+SK+Q +ALST EAEY++AA C Q +W++ LE G K I CDN++ I
Sbjct: 1210 AICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAEEKSATVINCDNSSTIQ 1269
Query: 946 LSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRF 999
LSK+P+LH ++KHIEV++HY+RD V + LEY T+ Q ADIFTKPL ++F
Sbjct: 1270 LSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTKPLKLEQF 1323
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 649 bits (1675), Expect = 0.0
Identities = 368/975 (37%), Positives = 559/975 (56%), Gaps = 39/975 (4%)
Query: 43 VINDVLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVLFSGKRKNYIYKIKS 102
+I +V LV GL NLLS+ QI + GY V F C + NG + + + + +KIK
Sbjct: 380 IIKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRC-IIQDANGKEIMNIEMTDKSFKIKL 438
Query: 103 SELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEALCEACQ 162
S + + + + + W +RLGH S +++ Q+ L+ GLPR K + E C+AC
Sbjct: 439 SSVEEEAMTANVQTEET---WHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKET-CKACN 494
Query: 163 KGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLR 222
GK ++K F ++ T LE++H D+ GP++ +SI G +Y ++ +DDY+ WV FL+
Sbjct: 495 LGKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLK 554
Query: 223 HKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQ 282
K ET F F V+K+ S+ T+R E +GI+ + P +PQ
Sbjct: 555 QKSETFATFKKFKALVEKQSNCSIKTLRP----------MEVFCEDEGINRQVTLPYSPQ 604
Query: 283 QNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEK-TPYELCK 341
QNG ERKNR+L EMAR+M+ E + LWAEA+ T+ Y+ N + + I + TP E
Sbjct: 605 QNGAAERKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWC 664
Query: 342 GRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEES 401
G +P++S+ FGS CY+ ++ K D+KA +GYS ++KG+R++ + + VE S
Sbjct: 665 GHKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVS 724
Query: 402 IQIRF--DGKLGSEKSKLFERFADLSI-DCSEA-NQPKNSSEDVAP-EAEASEAAPTTSD 456
+ F D K +K + ++ +SI D E+ +Q + SS D++ + A+ TS
Sbjct: 725 RDVVFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQETSSHDLSQIDDHANNGEGETSS 784
Query: 457 QLQKKKRIAVSHPEELIIGNKDAPVRTRSMLK-----PSEETLLSLKG----LVSLIEPK 507
+ + V+ EE ++P + +SM + P E + +G LV+ EP+
Sbjct: 785 HVLSQ----VNDQEER--ETSESPKKYKSMKEILEKAPRMENDEAAQGIEACLVANEEPQ 838
Query: 508 SVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEVTRNK 567
+ DEA DK W M EE+ KN W L+ KP+ +VI KW+++ K + G ++K
Sbjct: 839 TYDEARGDKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDASGNHVKHK 898
Query: 568 ARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGYISEE 627
ARLVA+G+SQ+ GIDY ETF+PV+R + IR L++++ L+QMDVKSAFLNG + EE
Sbjct: 899 ARLVARGFSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEE 958
Query: 628 VYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCI 687
VYV QPPGF + + V +L K+LYGLKQAPRAWYER+ S+ +QN F R D L+
Sbjct: 959 VYVTQPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSK 1018
Query: 688 TYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRPGVT 747
D+LIV +YVDD+I N L F K M+ EFEM+ +G L YFLG++++Q
Sbjct: 1019 KKGEDVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGI 1078
Query: 748 YIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSK--VCQKLYRGMIGSLLYLT 805
++ Q+KY +L+ KF M + TP+ P + E K YR ++G LLYL
Sbjct: 1079 FLSQEKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLYLC 1138
Query: 806 ASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDAD 865
ASRPD++++ +R+ S P H KR+L+Y+KGT+N G+++ L G+ D+D
Sbjct: 1139 ASRPDVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSD 1198
Query: 866 FAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLE 925
+ G ++KST+G LG + W S +Q T+A STAEAEY++ Q IW++ E
Sbjct: 1199 WGGSLEDKKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFE 1258
Query: 926 DYGLSLKK-VPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDH 984
D+GL K+ +PI CDN +AI++ +NP+ H R KHIE+KYH++R+ KG + LEY +
Sbjct: 1259 DFGLKFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGED 1318
Query: 985 QWADIFTKPLAEDRF 999
Q AD+ TK L+ RF
Sbjct: 1319 QLADVLTKALSVSRF 1333
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 619 bits (1596), Expect = e-177
Identities = 364/996 (36%), Positives = 524/996 (52%), Gaps = 120/996 (12%)
Query: 20 LALEETRREKSLEKGSI----GDGKIPVINDVLLVEGLFHNLLSISQIANKGYDVIFNQT 75
+AL + + + KG+I +G I++V + + N+LS+ Q+ KGYD+
Sbjct: 363 VALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDN 422
Query: 76 GCKAVSQTNGSVLFSGKRKNYIYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKI 135
+ + + KN ++ + ++Q +K M +E W+W R GH + +
Sbjct: 423 NLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFGGL 480
Query: 136 SQLSKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVK 195
LS+ ++RGLP + + ++ +CE C G K F ++ +PLEL+H D+ GP+K
Sbjct: 481 ELLSRKEMVRGLPCINHPNQ-VCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIK 539
Query: 196 TESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGG 255
+S+G Y L+ +DD+SR TWV FL+ K E IF F V+KE + T+RSD GG
Sbjct: 540 PKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGG 599
Query: 256 EFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEA 315
EF +K F + GI + PR+PQQNGV ERKNRT+ EMAR+M++ + K LWAEA
Sbjct: 600 EFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEA 659
Query: 316 INTAYYIHNIISIRPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALK 375
+ A Y+ N + + KTP E GR+P +S+ FGS + E+ K D K+ K
Sbjct: 660 VACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEK 719
Query: 376 CYFLGYSERSKGFRIYN------IIHQTVEESIQIRFDGKLGSEKSKLFERFADLSIDCS 429
F+GY SKG+++YN II + + + +D E F F
Sbjct: 720 YIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHF-------- 771
Query: 430 EANQPKNSSEDVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKP 489
E ++P+ + E+ E + TS Q+++ + + R RS+ +
Sbjct: 772 EEDKPEPTREEPPSEEPTTPPTSPTSSQIEES--------------SSERTPRFRSIQEL 817
Query: 490 SEETL----LSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFH 545
E T L+L L + EP EA+E K W M EE+ KND W L S P G
Sbjct: 818 YEVTENQENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHK 877
Query: 546 VIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVN 605
IG KWV++ K N KGEV R KARLVA+GYSQ+ GIDY E F+PVARLE +RL+IS +
Sbjct: 878 AIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQ 937
Query: 606 HNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYER 665
+ +HQMDVKSAFLNG + EEVY++QP G+ D V +LKK LYGLKQAPRAW R
Sbjct: 938 NKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTR 997
Query: 666 LSSFLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFE 725
+ + + +F++ ++ L+ K DILI +YVDD+IF NPS+ +EF K M EFE
Sbjct: 998 IDKYFKEKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFE 1057
Query: 726 MSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEV 785
M+ +G + Y+LGI++ Q +I Q+ Y E+LKKF M D N S
Sbjct: 1058 MTDIGLMSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPS--------------- 1102
Query: 786 SSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTN 845
++GSL YLT +RPDIL++V + +R+ P TH A KRIL+Y+KGT N
Sbjct: 1103 -----------LVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVN 1151
Query: 846 LGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEA 905
GL Y TS+Y L CH
Sbjct: 1152 FGLHYSTTSDYKLV-------------------VCH------------------------ 1168
Query: 906 EYVSAATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHSRAKHIEVKYH 964
IW++N L++ L ++ I+ DN +AI+L+KNP+ H R+KHI+ +YH
Sbjct: 1169 -----------AIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYH 1217
Query: 965 YIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFL 1000
YIR+ V K + LEYV T Q ADIFTKPL + F+
Sbjct: 1218 YIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFI 1253
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 619 bits (1596), Expect = e-177
Identities = 352/1001 (35%), Positives = 546/1001 (54%), Gaps = 52/1001 (5%)
Query: 17 EETLALEETRREKSLEKGSIG---DGKIPVINDVLLVEGLFHNLLSISQIANKGYDVIFN 73
++ + L + RR KG + DG+I VI+DV V GL +NL S+ Q+ KG I
Sbjct: 283 KQNVRLGDDRRMAVEGKGKLRLEVDGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIE 342
Query: 74 QTGCKAVSQTNGS-VLFSGKRKNYIYKI-----KSSELLSQKVKCLMSVNDEQWIWLRRL 127
C+ +T V+ S KN ++ + KS E +++ +CL + +W +R
Sbjct: 343 GDVCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKE--TEETRCLQVIGKANNMWHKRF 400
Query: 128 GHASLRKISQLSKLNLIRGLPRLKYSSE-ALCEACQKGKFTKKPFKAKNVVSTTRPLELL 186
GH + + + L++ +++GLP+ E A+C+ C KGK ++ ++ +T+ L+L+
Sbjct: 401 GHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLV 460
Query: 187 HIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSV 246
H D+ GP+ S GK+Y L +DD+SR W L K ET F F +V++E +
Sbjct: 461 HTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKL 520
Query: 247 ITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESS 306
+ +RSD GGE+ ++ F+E GI + TPQQNGV ERKNR++ M R M+ E S
Sbjct: 521 VCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMS 580
Query: 307 MAKHLWAEAINTAYYIHNIISIRPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQL 366
+ + W EA+ A YI N + + + TP E +P + + FGS Y L ++
Sbjct: 581 VPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKR 640
Query: 367 GKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDGKLGSE--KSKLFERFADL 424
K D K++KC G S+ SK +R+Y+ + S ++FD + G E L E
Sbjct: 641 IKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWEDKSLEEELVWD 700
Query: 425 SIDCSEANQP-----KNSSEDVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDA 479
+ D A + N +D E E T Q + + KD
Sbjct: 701 NSDHEPAGEEGPEINHNGQQDQEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDY 760
Query: 480 PVRTRSMLKPSEETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMS 539
V +L +E L + +P +EA + + W M+ E+ +N+ W L+
Sbjct: 761 VVGNARVLITQDEEDEVLALFIGPDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVE 820
Query: 540 KPKGFHVIGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLL 599
P+ VIG KW+F+ K NEKGEV + KARLVA+GY Q+ G+D+ E F+PVA+ + IRL+
Sbjct: 821 LPEEAKVIGLKWIFKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLI 880
Query: 600 ISFSVNHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAP 659
+ + ++ Q+DVKSAFL+G + E+V+V+QP GFE ++ VYKLKK+LYGLKQAP
Sbjct: 881 LGLAAEKGWSVFQLDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAP 940
Query: 660 RAWYERLSSFLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKL 719
RAWY R+ F + F + ++TLF ++D L+V +YVDD+I+ ++ + + F
Sbjct: 941 RAWYSRIEEFFGKEGFEKCYCEHTLFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNS 1000
Query: 720 MQAEFEMSMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCI 779
M EF M+ +G++KYFLG+++ Q +I+Q+KY E++KK+ M CN K P+ P
Sbjct: 1001 MMEEFAMTDLGKMKYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPG-- 1058
Query: 780 LEKEEVSSKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKY 839
QKL + G++ +R+ P E HL AVKRIL+Y
Sbjct: 1059 -----------QKLTKA--GAV-----------------SRYMESPNEQHLLAVKRILRY 1088
Query: 840 LKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIA 899
++GT +LG+ Y + L GF D+D+AGD +RKSTSG LG + W+SK+Q +
Sbjct: 1089 VQGTLDLGIQYERGGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVT 1148
Query: 900 LSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLK-KVPIYCDNTAAISLSKNPILHSRAKH 958
LST EAE+VSA+ Q +W++N LE+ G + ++CDN++ I LSKNP+LH R+KH
Sbjct: 1149 LSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKH 1208
Query: 959 IEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRF 999
I V+YH++R+ V++GT+ L+Y T Q ADI TK + + F
Sbjct: 1209 IHVRYHFLRELVKEGTIRLDYCTTTDQVADIMTKAVKREVF 1249
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 600 bits (1548), Expect = e-171
Identities = 348/989 (35%), Positives = 543/989 (54%), Gaps = 33/989 (3%)
Query: 34 GSIGDGKIPVINDVLLVEGLFHNLLSISQIANK-GYDVIFNQTGCKAVSQTNGSVLFSGK 92
G++ K ++ +VL + NL+SIS + G VIF+ + C+ T G L GK
Sbjct: 484 GTVLINKDIILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGK 543
Query: 93 RKNYIYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKY 152
R +Y + ++ + V ++ V+ +W +RLGH S ++ LS+ + G R K
Sbjct: 544 RIGNLY-VLDTQSPAISVNAVVDVS----VWHKRLGHPSFSRLDSLSE---VLGTTRHKN 595
Query: 153 SSEALCEACQKGKFTKKPF-KAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDD 211
A C C K K F A N+ ++T ELLHID++GP E++ G KY L IVDD
Sbjct: 596 KKSAYCHVCHLAKQKKLSFPSANNICNST--FELLHIDVWGPFSVETVEGYKYFLTIVDD 653
Query: 212 YSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGI 271
+SR TW+ L+ K + T+F FI V+ ++ T V +VRSD+ E AF E + ++GI
Sbjct: 654 HSRATWIYLLKSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKEL---AFTEFYKAKGI 710
Query: 272 SHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPI 331
SCP TP+QN VVERK++ + +AR +M +S+M+ W + + TA ++ N +
Sbjct: 711 VSFHSCPETPEQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALL 770
Query: 332 LEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIY 391
KTP+E+ G+ PD S FG CY + +Q KF ++ C FLGY KG+++
Sbjct: 771 SNKTPFEVLTGKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLL 830
Query: 392 NIIHQTVEESIQIRFDGKLGSEKSKLFERFADLSIDCSEANQPKNSSEDVAPEAEASEAA 451
++ V S + F +L S ++ A + D P +S + + + +
Sbjct: 831 DLESNVVHISRNVEFHEELFPLASS--QQSATTASDVFTPMDPLSSGNSITSHLPSPQIS 888
Query: 452 PTTSDQLQKKKRIAVSHPEEL-----IIGNKDAPVRTRSMLKPSEET---LLSLKGLVSL 503
P+T Q KR P L NKD S L S+ + +L + + +
Sbjct: 889 PST----QISKRRITKFPAHLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLYINNISKI 944
Query: 504 IEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEV 563
P+S EA + K W + +E+ + D W + S P G +G KWVF K + G +
Sbjct: 945 PIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSL 1004
Query: 564 TRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGY 623
R KAR+VA+GY+Q+EG+DYTETFSPVA++ ++LL+ S + L+Q+D+ +AFLNG
Sbjct: 1005 ERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGD 1064
Query: 624 ISEEVYVKQPPGFEDDKY----PDHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGK 679
+ E +Y+K P G+ D K P+ V +LKKS+YGLKQA R W+ + S+ LL F +
Sbjct: 1065 LEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQH 1124
Query: 680 GDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQ 739
GD+TLF ++ +++ +YVDDI+ S + ++ ++A F++ +G LKYFLG++
Sbjct: 1125 GDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLE 1184
Query: 740 IDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIG 799
+ + + Q+KY LELL +M DC S PM P L K + +++YR ++G
Sbjct: 1185 VARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVG 1244
Query: 800 SLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLS 859
L+YLT +RPDI F+V+ +F S PR HL AV ++L+Y+KGT GL Y + TL
Sbjct: 1245 KLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLK 1304
Query: 860 GFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIW 919
G+ DAD+ R+ST+G F+GS+L++W SK+Q T++ S+AEAEY + A + W
Sbjct: 1305 GYTDADWGTCPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAW 1364
Query: 920 MKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEY 979
+ L + +Y D+TAA+ ++ NP+ H R KHIE+ H +R+ + G L L +
Sbjct: 1365 LSTLLLALRVHSGVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLH 1424
Query: 980 VDTDHQWADIFTKPLAEDRFLFILENLNM 1008
V T Q ADI TKPL +F +L +++
Sbjct: 1425 VKTKDQVADILTKPLFPYQFAHLLSKMSI 1453
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 587 bits (1514), Expect = e-168
Identities = 350/983 (35%), Positives = 536/983 (53%), Gaps = 36/983 (3%)
Query: 37 GDGKIPVINDVLLVEGLFH-----NLLSISQIANK-GYDVIFNQTGCKAVSQTNGSVLFS 90
G G + + +D+LL LF NL+SIS + + G VIF++ C+ G +L
Sbjct: 471 GVGTLKLNDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQ 530
Query: 91 GKRKNYIYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRL 150
G+R +Y + + S V ++ ++ +W RRLGHASL+++ +S G R
Sbjct: 531 GRRVANLYLLDVGDQ-SISVNAVVDIS----MWHRRLGHASLQRLDAISDS---LGTTRH 582
Query: 151 KYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
K C C K K F N V +LLHID++GP E++ G KY L IVD
Sbjct: 583 KNKGSDFCHVCHLAKQRKLSFPTSNKVCK-EIFDLLHIDVWGPFSVETVEGYKYFLTIVD 641
Query: 211 DYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQG 270
D+SR TW+ L+ K E T+F FI QV+ +++ V VRSD+ E + F + +G
Sbjct: 642 DHSRATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELK---FTSFYAEKG 698
Query: 271 ISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRP 330
I SCP TP+QN VVERK++ + +AR +M +S + LW + + TA ++ N +
Sbjct: 699 IVSFHSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQL 758
Query: 331 ILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRI 390
++ KTPYE+ G P FG CY + +Q KF ++ C FLGY KG+++
Sbjct: 759 LMNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKL 818
Query: 391 YNIIHQTVEESIQIRFDGKL-------GSEKS-KLFERFADLSIDCSEANQPKNSSEDVA 442
++ TV S ++F ++ GSE S KLF +S SS
Sbjct: 819 MDLESNTVFISRNVQFHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLP-- 876
Query: 443 PEAEASEAAPTTSDQLQKKKRIAVS--HPEELIIGNKDAPVRTRSMLKPSEETLLSLKGL 500
++ S+ P S Q +K ++ H + +K T S K S + + +
Sbjct: 877 --SQISDLPPQISSQRVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNI 934
Query: 501 VSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEK 560
+ P + EA + K W + E+ K + W + + PKG +G KWVF K
Sbjct: 935 TKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLAD 994
Query: 561 GEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFL 620
G + R KARLVA+GY+Q+EG+DYT+TFSPVA++ I+LL+ S + L Q+DV +AFL
Sbjct: 995 GNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFL 1054
Query: 621 NGYISEEVYVKQPPGFEDDK---YPDHVY-KLKKSLYGLKQAPRAWYERLSSFLLQNEFV 676
NG + EE+++K P G+ + K P +V +LK+S+YGLKQA R W+++ SS LL F
Sbjct: 1055 NGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFK 1114
Query: 677 RGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFL 736
+ GD+TLF Y + +IV +YVDDI+ S + + + ++ + F++ +G+LKYFL
Sbjct: 1115 KTHGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFL 1174
Query: 737 GIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRG 796
G+++ + I Q+KY LELL+ M C PM P + K++ + YR
Sbjct: 1175 GLEVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRR 1234
Query: 797 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEY 856
++G L+YLT +RPDI F+V+ +F S PR THLTA R+L+Y+KGT GL Y +S+
Sbjct: 1235 IVGKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDL 1294
Query: 857 TLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQ 916
TL GF D+D+A + R+ST+ F+G +L++W SK+Q+T++ S+AEAEY + A +
Sbjct: 1295 TLKGFADSDWASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCE 1354
Query: 917 TIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLS 976
+W+ L S +Y D+TAAI ++ NP+ H R KHI++ H +R+ + G L
Sbjct: 1355 MVWLFTLLVSLQASPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELK 1414
Query: 977 LEYVDTDHQWADIFTKPLAEDRF 999
L +V T+ Q ADI TKPL +F
Sbjct: 1415 LLHVRTEDQVADILTKPLFPYQF 1437
>At1g70010 hypothetical protein
Length = 1315
Score = 584 bits (1506), Expect = e-167
Identities = 347/1001 (34%), Positives = 537/1001 (52%), Gaps = 33/1001 (3%)
Query: 34 GSIGDGKIPVINDVLLVEGLFHNLLSISQIANK-GYDVIFNQTGCKAVSQTNGSVLFSGK 92
GS+ G+ ++NDVL + NLLS+S + G + F++T C T ++ GK
Sbjct: 315 GSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGK 374
Query: 93 RKNYIYKIKSSELLSQKVKCLMSVND--EQWIWLRRLGHASLRKISQLSKLNLIRGLPRL 150
+ +Y + L ++V +W +RLGH S++K+ +S L P+
Sbjct: 375 QVANLYIVDLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSL---LSFPKQ 431
Query: 151 KYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVD 210
K +++ C C K PF + N S+ RP +L+HID +GP ++ G +Y L IVD
Sbjct: 432 KNNTDFHCRVCHISKQKHLPFVSHNNKSS-RPFDLIHIDTWGPFSVQTHDGYRYFLTIVD 490
Query: 211 DYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQG 270
DYSR TWV LR+K + T+ F+T V+ +F+T++ VRSD+ E F + ++S+G
Sbjct: 491 DYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FTQFYHSKG 547
Query: 271 ISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRP 330
I SCP TPQQN VVERK++ + +AR++ +S + W + I TA Y+ N +
Sbjct: 548 IVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAPI 607
Query: 331 ILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRI 390
+ +K P+E+ P + FG CY + + KF +A C F+GY KG+++
Sbjct: 608 LEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYKL 667
Query: 391 YNIIHQTVEESIQIRFDGKL----GSEKSKLFERF-------ADLSIDCSEANQPKNSSE 439
++ ++ S + F +L GS+ S+ + F + S+ P +SS
Sbjct: 668 LDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSSS 727
Query: 440 --DVAPEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGN--KDAPVRTRSML---KPSEE 492
++ P A + P S Q +K ++ ++ + P R L + ++
Sbjct: 728 SVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRINDP 787
Query: 493 TLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWV 552
L L L EP + EA + + W M E D W + S P IG +W+
Sbjct: 788 YLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRWI 847
Query: 553 FRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQ 612
F+ K N G V R KARLVAQGY+Q+EGIDY ETFSPVA+L +++LL+ + ++L Q
Sbjct: 848 FKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLTQ 907
Query: 613 MDVKSAFLNGYISEEVYVKQPPGFE----DDKYPDHVYKLKKSLYGLKQAPRAWYERLSS 668
+D+ +AFLNG + EE+Y++ P G+ D P+ V +LKKSLYGLKQA R WY + SS
Sbjct: 908 LDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFSS 967
Query: 669 FLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSM 728
LL F++ D+T F L V +Y+DDII S N + M++ F++
Sbjct: 968 TLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRD 1027
Query: 729 MGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSK 788
+GELKYFLG++I + +I Q+KY L+LL + C S PM P+ + +
Sbjct: 1028 LGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDF 1087
Query: 789 VCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGL 848
V YR +IG L+YL +RPDI F+V+ A+F PR+ HL AV +IL+Y+KGT GL
Sbjct: 1088 VEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGL 1147
Query: 849 MYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYV 908
Y TSE L + +AD+ R R+STSG C FLG +L+ W S++Q+ ++ S+AEAEY
Sbjct: 1148 FYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYR 1207
Query: 909 SAATCCTQTIWMKNHLEDYGLSLKK-VPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIR 967
S + + +W+ N L++ + L K ++CDN AAI ++ N + H R KHIE H +R
Sbjct: 1208 SLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSVR 1267
Query: 968 DHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFLFILENLNM 1008
+ + KG L +++T+ Q AD FTKPL F ++ + +
Sbjct: 1268 ERLLKGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 583 bits (1502), Expect = e-166
Identities = 338/1005 (33%), Positives = 535/1005 (52%), Gaps = 42/1005 (4%)
Query: 38 DGKIPVINDVLLVEGLFHNLLSISQIANK-GYDVIFNQTGCKAVSQTNGSVLFSGKRKNY 96
+GKIP +N+VL+V + +LLS+S++ + V F+ + V+ +G R+N
Sbjct: 373 NGKIP-LNEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNG 431
Query: 97 IYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEA 156
+Y +++ E ++ + +E +W RLGHA+ + + L I+ K +
Sbjct: 432 LYVLENQEFVALYSNRQCAATEE--VWHHRLGHANSKALQHLQNSKAIQ---INKSRTSP 486
Query: 157 LCEACQKGKFTKKPFKAKNVVSTTR---PLELLHIDLFGPVKTESIGGKKYGLVIVDDYS 213
+CE CQ GK ++ PF ++S +R PL+ +H DL+GP S G KY + VDDYS
Sbjct: 487 VCEPCQMGKSSRLPF----LISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYS 542
Query: 214 RWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISH 273
R++W L +K E ++F +F V+ + T + +SD GGEF + + + GI H
Sbjct: 543 RYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHH 602
Query: 274 NFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILE 333
SCP TPQQNG+ ERK+R L E+ +M+ S + W E+ TA YI N + +
Sbjct: 603 RISCPYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKN 662
Query: 334 KTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNI 393
+PYE G +PD S FGS CY KFD ++L+C FLGY+ + KG+R +
Sbjct: 663 LSPYEALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYP 722
Query: 394 IHQTVEESIQIRFDGKLGSEKSKLFERFADLSIDCSEANQPKNSSEDVAPEA-------- 445
V S + F+ K K S +A Q SE P A
Sbjct: 723 PTGKVYISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKP 782
Query: 446 -------------EASEAAPTT----SDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLK 488
+ ++ PT+ SD+ ++ +E +I + R+++ ++
Sbjct: 783 IDLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQ 842
Query: 489 PSEETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIG 548
+ ++ EPK++ A++ GW + EE+++ W+L+ +++
Sbjct: 843 KPNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILS 902
Query: 549 TKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNI 608
+KWVF+ KL+ G + + KARLVA+G+ Q+EG+DY ETFSPV R IRL++ S +
Sbjct: 903 SKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGW 962
Query: 609 TLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSS 668
+ Q+DV +AFL+G + E V++ QP GF D + P HV +L K++YGLKQAPRAW++ S+
Sbjct: 963 PIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSN 1022
Query: 669 FLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSM 728
FLL FV K D +LF IL + +YVDDI+ ++ SL ++ + ++ F M
Sbjct: 1023 FLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKD 1082
Query: 729 MGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSK 788
+G +YFLGIQI+ ++HQ Y ++L++ MSDCN TP+ E+ ++
Sbjct: 1083 LGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQQLDNLNSELFAE 1142
Query: 789 VCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGL 848
+R + G L YLT +RPDI F+V+ + P + +KRIL+Y+KGT +GL
Sbjct: 1143 --PTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGL 1200
Query: 849 MYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYV 908
++ S TLS + D+D AG + R+ST+G C LGSNL++WS+KRQ T++ S+ EAEY
Sbjct: 1201 PIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYR 1260
Query: 909 SAATCCTQTIWMKNHLEDYGL-SLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIR 967
+ + W+ L D G+ +YCDN +A+ LS NP LH+R+KH + YHYIR
Sbjct: 1261 ALTYAAREITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIR 1320
Query: 968 DHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFLFILENLNMDFCP 1012
+ V G + +++ Q AD+FTK L F+ + L + P
Sbjct: 1321 EQVALGLIETQHISATFQLADVFTKSLPRRAFVDLRSKLGVSGSP 1365
>At3g25450 hypothetical protein
Length = 1343
Score = 581 bits (1497), Expect = e-166
Identities = 337/999 (33%), Positives = 537/999 (53%), Gaps = 42/999 (4%)
Query: 37 GDGKIPVIN---------DVLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSV 87
G G IP I+ DV + L N+LS+ Q G D+ + + +
Sbjct: 332 GKGSIPFISKGGERKILFDVYYIPDLKSNILSLGQATESGCDIRMREDYLTLHDREGNLL 391
Query: 88 LFSGKRKNYIYKIKSSELLSQKVKCL-MSVNDEQWIWLRRLGHASLRKISQLSKLNLIRG 146
+ + + +N +YK+ L + KCL ++ +E IW RLGH S I + K L+ G
Sbjct: 392 IKAQRSRNRLYKVS---LEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIG 448
Query: 147 LPRLKYSSEALCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGL 206
+ + C +C GK + F + LEL+H DL GP+ + K+Y
Sbjct: 449 ISSSVPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVF 508
Query: 207 VIVDDYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELF 266
V++DD+SR+ W L+ K E F F V++E + T R+D GGEF + F+E
Sbjct: 509 VLIDDHSRYMWSILLKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFC 568
Query: 267 NSQGISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNII 326
+GI+ + + P TPQQNGVVER+NRTL M R++++ +M +LW EA+ + Y+ N +
Sbjct: 569 AKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRV 628
Query: 327 SIRPILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSK 386
R + +TPYE+ K ++P++ + FG Y L K D ++ +LG SK
Sbjct: 629 GTRSLSNQTPYEVFKHKKPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSK 688
Query: 387 GFRIYNIIHQTVEESIQIRFDGKLG----SEKSKLFERFADLSIDCSEANQPKNSSEDVA 442
+R+ + + + S + FD S+ + +I SE + D++
Sbjct: 689 AYRLLDPTKRRIFVSRDVVFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDIS 748
Query: 443 PEAEASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDA-PVRT--RSMLKPS--------- 490
E E +E A + + I + EE ++ PVR R +++P+
Sbjct: 749 TEPEETEEAEINGED---ENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVLCA 805
Query: 491 ----EETLLSLKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHV 546
E LL++ EP EA + K W +EE+ KN W+L+ P G
Sbjct: 806 EIEAEHLLLAVND-----EPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKA 860
Query: 547 IGTKWVFRNKLNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNH 606
IG KWVF+ K N G + + KARLVA+GY Q+ G+D+ E F+PVAR+E +RL+I+ + ++
Sbjct: 861 IGVKWVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASN 920
Query: 607 NITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERL 666
+H +DVK+AFL+G + E+VYV QP GF + + + VYKL K+LYGL+QAPRAW +L
Sbjct: 921 GWEIHHLDVKTAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKL 980
Query: 667 SSFLLQNEFVRGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEM 726
+ L + +F + + +L+ +IL+V +YVDD++ +N + F K M +FEM
Sbjct: 981 NEILKELKFEKCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEM 1040
Query: 727 SMMGELKYFLGIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVS 786
S +G+L Y+LGI++ Q + Q++Y ++L++ MS CN TPM + L K +
Sbjct: 1041 SDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDE 1100
Query: 787 SKVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNL 846
++ + YR IG L YL +RPD+ ++V + +R+ +PRE+H A+K+IL+YL+GTT+
Sbjct: 1101 KRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSH 1160
Query: 847 GLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAE 906
GL ++K L G+ D+ D + KST G +L +TW S++Q + LS+ EAE
Sbjct: 1161 GLYFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAE 1220
Query: 907 YVSAATCCTQTIWMKNHL-EDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHY 965
+++A Q IW++ L E G +KV I DN +AI+L+KNP+ H R+KHI +YH+
Sbjct: 1221 FMAATEAAKQAIWLQELLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHF 1280
Query: 966 IRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFLFILE 1004
IR+ V+ G + +E+V Q ADI TK L + +FL + E
Sbjct: 1281 IRECVENGQIEVEHVPGVRQKADILTKALGKIKFLEMRE 1319
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 538 bits (1386), Expect = e-153
Identities = 318/976 (32%), Positives = 521/976 (52%), Gaps = 56/976 (5%)
Query: 44 INDVLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVLFSGKRKNYIYKIKSS 103
+ DV + L N++S+ Q G DV + +L + + +N +YK+
Sbjct: 336 LTDVYFIPDLKSNIISLGQATEAGCDVRMKDDQLTLHDREGCLLLRATRSRNRLYKV--- 392
Query: 104 ELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEALCEACQK 163
+L + VKCL + + + + L+ G+ + E C +C
Sbjct: 393 DLNVENVKCLQL------------------EAATMVRKELVIGISNIPKEKET-CGSCLL 433
Query: 164 GKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWTWVKFLRH 223
GK ++PF ++ LEL+H DL GP+ + K+Y LV++DD++R+ W L+
Sbjct: 434 GKQARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLKE 493
Query: 224 KDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQ 283
K E F +F T+V++E + T R+D GGEF ++ F++ +GI+ + + P TPQQ
Sbjct: 494 KSEAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTAPYTPQQ 553
Query: 284 NGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTPYELCKGR 343
NGVVER+NRTL M R++++ M +LW EA+ + YI N + R + +TPYE+ K R
Sbjct: 554 NGVVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEVFKQR 613
Query: 344 QPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQ 403
+P++ + FG Y L K D ++ +LG SK +R+ + ++ +
Sbjct: 614 KPNVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKII---- 669
Query: 404 IRFDGKLGSEKSKLFERFADLSIDCSE-ANQPKNSSEDVAPEAEASEAAPTTSDQLQKKK 462
K + S+ + S+ E N S+D+ E E+ + ++ + +
Sbjct: 670 -----KWNNSDSETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEGENEH 724
Query: 463 RIAVSHPEELIIGNKDAPV-----RTRSMLKPS-------------EETLLSLKGLVSLI 504
E + P+ TR + KP+ E+ LL++
Sbjct: 725 NEQEQIDAEETQPSHATPLPTLRRSTRQVGKPNYLDDYVLMAEIEGEQVLLAIND----- 779
Query: 505 EPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEVT 564
EP EA + K W +EE+ KN W+L+ P VIG KWVF+ K N G +
Sbjct: 780 EPWDFKEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSIN 839
Query: 565 RNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGYI 624
+ KARLVA+GY Q+ GIDY E F+ VAR+E IR++I+ + ++ +H +DVK+AFL+G +
Sbjct: 840 KYKARLVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGEL 899
Query: 625 SEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTL 684
E+VYV QP GF + VYKL K+LYGLKQAPRAW +L+ L + FV+ + ++
Sbjct: 900 REDVYVTQPEGFTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSV 959
Query: 685 FCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQRP 744
+ + +LIV IYVDD++ ++ L F K M +FEMS +G+L Y+LGI++ R
Sbjct: 960 YRRQEEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRK 1019
Query: 745 GVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLYL 804
+ Q++Y ++++++ MS+CN PM L K + + ++ YR MIG L Y+
Sbjct: 1020 NGIILRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIGCLRYI 1079
Query: 805 TASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDA 864
+RPD+ + V + +R+ PRE+H A+K++L+YLKGT + GL ++ + L G+ D+
Sbjct: 1080 VHTRPDLSYCVGVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDS 1139
Query: 865 DFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKN-H 923
+ D + KST+G +L +TW S++Q +ALS+ EAE+++A Q IW+++
Sbjct: 1140 SHSADLDDGKSTAGHIFYLHQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLF 1199
Query: 924 LEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTD 983
E G + +KV I DN +AI+L+KN + H R+KHI +YH+IR+ V+ + +++V
Sbjct: 1200 AEVCGTTSEKVMIRVDNKSAIALTKNLVFHGRSKHIHRRYHFIRECVENNLVEVDHVPGV 1259
Query: 984 HQWADIFTKPLAEDRF 999
Q ADI TKPL +F
Sbjct: 1260 EQRADILTKPLGRIKF 1275
>At1g37110
Length = 1356
Score = 529 bits (1362), Expect = e-150
Identities = 340/1041 (32%), Positives = 543/1041 (51%), Gaps = 69/1041 (6%)
Query: 9 KNWHRLSQEE---TLALEETRREKSLEKGSIG----DGKIPVINDVLLVEGLFHNLLSIS 61
++W QE+ T+ L + +S +G+I G I ++ +V V L NL+S
Sbjct: 322 RDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTG 381
Query: 62 QIANKGYDVIFNQTGCKAVSQ-TNGSVLFSGKRKNYIYKIKSSELLSQKVKCLMSVNDEQ 120
+ GY ++ G V N G N +Y + S ++S+ +
Sbjct: 382 TLDKLGYR---HEGGEGKVRYFKNNKTALRGSLSNGLYVLDGSTVMSELCNAETD-KVKT 437
Query: 121 WIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEALCEACQKGKFTKKPFKAKNVVSTT 180
+W RLGH S+ + L+ LI R + + CE C GK K F S
Sbjct: 438 ALWHSRLGHMSMNNLKVLAGKGLI---DRKEINELEFCEHCVMGKSKKVSFNVGKHTSED 494
Query: 181 RPLELLHIDLFG-PVKTESIGGKKYGLVIVDDYSRWTWVKFLRHKDETHTIFTNFITQVQ 239
L +H DL+G P T SI GK+Y L I+DD +R W+ FL+ KDET F + + V+
Sbjct: 495 A-LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVE 553
Query: 240 KEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSCPRTPQQNGVVERKNRTLQEMAR 299
+ V +R+D+G EF N F+ GI + +C TPQQNGV ER NRT+ E R
Sbjct: 554 NQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVR 613
Query: 300 TMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTPYELCKGRQPDISYFHPFGSTCYM 359
++ +S + + WAEA TA Y+ N I P E+ R+P + FGS Y+
Sbjct: 614 CLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYV 673
Query: 360 LNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQTVEESIQIRFDGKLGSEKSKLFE 419
+ GK +ALK +FLGY +KG++++ + + S + F ++S ++
Sbjct: 674 ---HQDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEEKCVISRNVVF------QESVVYR 724
Query: 420 RFADLSIDCSEANQPKNSSEDVAPE--AEAS----------EAAPTTSDQLQKKKRIAVS 467
D NQ + +S +V AEAS ++ P T + V
Sbjct: 725 DLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVE 784
Query: 468 HPEEL--------IIGNKDAPVRTRSMLKP----SEETLLSLKGLVS----LIEPKSVDE 511
+ E+ + K A R R + P +EE+ ++ +V + EP+S E
Sbjct: 785 YSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQE 844
Query: 512 ALEDKG---WILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKG-EVTRNK 567
A+E + W + +E+D KN W L+ KPK +IG +W+F+ K G E TR K
Sbjct: 845 AMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFK 904
Query: 568 ARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGYISEE 627
ARLVA+GY+Q+EG+DY E F+PV + +IR+L+S V+ ++ L QMDVK+ FL+G + EE
Sbjct: 905 ARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEE 964
Query: 628 VYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCI 687
+Y++QP GF D + V +LKKSLYGLKQ+PR W +R F+ +F+R + D ++
Sbjct: 965 LYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVK 1024
Query: 688 -TYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI--DQRP 744
++D + + +YVDD++ A+ + + + EFEM MG LGI I D++
Sbjct: 1025 HVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKG 1084
Query: 745 GVTYIHQKKYTLELLKKFNMSDCNISKTPMHP----TCILEKEE-VSSKVCQKLYRGMIG 799
GV + Q+ Y ++L +FNMS ++ P+ + E++E V + V Y +G
Sbjct: 1085 GVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLAAVREEDECVDTDVVP--YSSAVG 1142
Query: 800 SLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTL 858
S++Y + +RPD+ +++ L +R+ S P H AVK +++YLKG +L L++ K ++T+
Sbjct: 1143 SIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDFTV 1202
Query: 859 SGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTI 918
+G+CD+++A D R+S SG +G N V+W + Q +A+ST EAEY++ A + +
Sbjct: 1203 TGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAM 1262
Query: 919 WMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLE 978
W+K L+D G+ KV I+CD+ +AI LSKN + H R KHI+V+++YIRD V+ G + +
Sbjct: 1263 WIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVL 1322
Query: 979 YVDTDHQWADIFTKPLAEDRF 999
+ T D TK + ++F
Sbjct: 1323 KIHTSRNPVDALTKCIPVNKF 1343
>At1g26990 polyprotein, putative
Length = 1436
Score = 506 bits (1302), Expect = e-143
Identities = 321/984 (32%), Positives = 502/984 (50%), Gaps = 75/984 (7%)
Query: 44 INDVLLVEGLFHNLLSISQIANKGYD-VIFNQTGCKAVSQTNGSVLFSGKRKNYIYKIKS 102
+++VL + NLLS+S + V F C + T +L G + +Y +
Sbjct: 473 LHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNL 532
Query: 103 SELLSQ------KVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEA 156
+ L K C SV +E +W +RLGH S KI LS + + LP+ K + ++
Sbjct: 533 DKSLVDVSSFPGKSVC-SSVKNESEMWHKRLGHPSFAKIDTLSDVLM---LPKQKINKDS 588
Query: 157 L-CEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRW 215
C C K PFK+ N + + EL+HID +GP ++ +Y L IVDD+SR
Sbjct: 589 SHCHVCHLSKQKHLPFKSVNHIRE-KAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRA 647
Query: 216 TWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNF 275
TW+ L+ K + T+F +F+ V+ ++ T V +VRSD+ E + F ELF +GI +
Sbjct: 648 TWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHELK---FNELFAKEGIKADH 704
Query: 276 SCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKT 335
CP TP+QN VVERK++ L +AR +M +S + W + + TA ++ N + I +T
Sbjct: 705 PCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNET 764
Query: 336 PYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIH 395
PYE +PD S FG CY + + KFD +A C FLGY KG+++ +I
Sbjct: 765 PYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIET 824
Query: 396 QTVEESIQIRFDGKLG-------SEKSKLFERFADLSIDCSEANQPKNSSEDVAPEA--E 446
+V S + F + ++ +K F L ++ + P S AP E
Sbjct: 825 YSVSISRHVIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDAPHNHDE 884
Query: 447 ASEAAPTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKP----------SEETLLS 496
+S S+ ++R SH ++ N + P T++ P SE
Sbjct: 885 SSSMIFVPSEPKSTRQRKLPSHLQDFHCYN-NTPTTTKTSPYPLTNYISYSYLSEPFGAF 943
Query: 497 LKGLVSLIEPKSVDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNK 556
+ + + P+ EA DK W M +E+ F + W++ P G +G KW+ K
Sbjct: 944 INIITATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIITIK 1003
Query: 557 LNEKGEVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVK 616
G + R+KARLVA+GY+QQEGID+ TFSPVA++ +++L+S + LHQ+D+
Sbjct: 1004 FLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLAPKMKWYLHQLDIS 1063
Query: 617 SAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFV 676
+A LNG + EE+Y+K PPG+ + + G + +P A
Sbjct: 1064 NALLNGDLEEEIYMKLPPGYSE-------------IQGQEVSPNA--------------- 1095
Query: 677 RGKGDNTLFCITYKNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFL 736
+ GD+TLF L+V +YVDDI+ S + E + + + F++ +GE K+FL
Sbjct: 1096 KCHGDHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFL 1155
Query: 737 GIQIDQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRG 796
GI+I + + Q+KY L+LL + SDC S PM P L K+ + K YR
Sbjct: 1156 GIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRR 1215
Query: 797 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEY 856
++G L YL +RPDI F+V A++ S P + HL A+ +IL+YLKGT GL Y + +
Sbjct: 1216 ILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTNF 1275
Query: 857 TLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQ 916
L GF D+D+ R+ +G F+G++LV+W SK+Q+ +++S+AEAEY + + +
Sbjct: 1276 DLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKE 1335
Query: 917 TIWMKNHLEDYGLSLKKVP------IYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHV 970
IW+ Y L+ K+P +YCDN AA+ ++ N + H R KHIE H +R+ +
Sbjct: 1336 LIWL-----GYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECI 1390
Query: 971 QKGTLSLEYVDTDHQWADIFTKPL 994
+ G L +V TD+Q AD TKPL
Sbjct: 1391 EAGILKTIFVRTDNQLADTLTKPL 1414
>At4g17450 retrotransposon like protein
Length = 1433
Score = 494 bits (1272), Expect = e-139
Identities = 306/977 (31%), Positives = 497/977 (50%), Gaps = 47/977 (4%)
Query: 40 KIPVINDVLLVEGL-FHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVLFSGKRKNYIY 98
KI I + L + + HN+L I + + + SQ + N+
Sbjct: 469 KIAGIGFIQLSDAISLHNVLYIPEFKFNLISELTKELMIGRGSQVGNLYVLDFNENNHTV 528
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSK-LNL-IRGLPRLKYSSEA 156
+K + + + SV + W +RLGH + KI LS LNL ++ + +
Sbjct: 529 SLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLKVKKINKEHSPVCH 588
Query: 157 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWT 216
+C C K F+++ + + +L+HID +GP + T
Sbjct: 589 VCHVCHLSKQKHLSFQSRQNMCSAA-FDLVHIDTWGPFSVPTNDA--------------T 633
Query: 217 WVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFS 276
W+ L++K + +F FI V ++QT + +VRSD+ E + F +LF + GI S
Sbjct: 634 WIYLLKNKSDVLHVFPAFINMVHTQYQTKLKSVRSDNAHELK---FTDLFAAHGIVAYHS 690
Query: 277 CPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTP 336
CP TP+QN VVERK++ + +AR ++ +S++ W + + TA ++ N + + K+P
Sbjct: 691 CPETPEQNSVVERKHQHILNVARALLFQSNIPLEFWGDCVLTAVFLINRLPTPVLNNKSP 750
Query: 337 YELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 396
YE K P FG CY + +Q KF+ +A C FLGY KG+++ +I
Sbjct: 751 YEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYKLLDIETH 810
Query: 397 TVEESIQIRFDGKL-----GSEKSKLFERFADLSIDCSEANQP--KNSSEDVAPEAEASE 449
V S + F + + K + + F L + P + S D P + S
Sbjct: 811 AVSISRHVIFHEDIFPFISSTIKDDIKDFFPLLQFPARTDDLPLEQTSIIDTHPHQDVSS 870
Query: 450 A-APTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGLVSLIEPKS 508
+ A D L K+++ H ++ N +E + + + + P+
Sbjct: 871 SKALVPFDPLSKRQKKPPKHLQDFHCYNNT-----------TEPFHAFINNITNAVIPQR 919
Query: 509 VDEALEDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEVTRNKA 568
EA + K W M+EE+ + + W+++S P IG KWVF K N G + R KA
Sbjct: 920 YSEAKDFKAWCDAMKEEIGAMVRTNTWSVVSLPPNKKAIGCKWVFTIKHNADGSIERYKA 979
Query: 569 RLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGYISEEV 628
RLVA+GY+Q+EG+DY ETFSPVA+L ++R+++ + ++HQ+D+ +AFLNG + EE+
Sbjct: 980 RLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEI 1039
Query: 629 YVKQPPGFED---DKYPDH-VYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTL 684
Y+K PPG+ D + P H + +L KS+YGLKQA R WY +LS+ L F + D+TL
Sbjct: 1040 YMKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTL 1099
Query: 685 FCITYKNDILI-VQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQIDQR 743
F I Y N +L+ V +YVDDI+ S + +F+ +++ F++ +G KYFLGI+I +
Sbjct: 1100 F-IKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARS 1158
Query: 744 PGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSSKVCQKLYRGMIGSLLY 803
I Q+KY LELL S P+ P+ L KE+ YR ++G L+Y
Sbjct: 1159 EKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKLMY 1218
Query: 804 LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCD 863
L +RPDI ++V+ +F P HL+AV ++L+YLKGT GL Y ++ L G+ D
Sbjct: 1219 LQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGYTD 1278
Query: 864 ADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNH 923
+DF R+ + C F+G LV+W SK+Q+T+++STAEAE+ + + + IW+
Sbjct: 1279 SDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLSRL 1338
Query: 924 LEDYGLS-LKKVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDT 982
+D+ + + +YCDNTAA+ + N + H R K +E+ + R+ V+ G L +V+T
Sbjct: 1339 FDDFKVPFIPPAYLYCDNTAALHIVNNSVFHERTKFVELDCYKTREAVESGFLKTMFVET 1398
Query: 983 DHQWADIFTKPLAEDRF 999
Q AD TK + +F
Sbjct: 1399 GEQVADPLTKAIHPAQF 1415
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 492 bits (1266), Expect = e-139
Identities = 317/989 (32%), Positives = 517/989 (52%), Gaps = 61/989 (6%)
Query: 38 DGKIPVINDVLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVLFSGKRKNYI 97
DG ++ DV + + NL+S+ + +KG ++ G + + + +VL +GK+++ +
Sbjct: 362 DGSTILLTDVRYIPEMSKNLISLGTLEDKGC-WFESKKGILTIFKNDLTVL-TGKKESTL 419
Query: 98 YKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQL-SKLNLIRGLPRLKYSSEA 156
Y ++ + L + + DE +W RLGH + + L SK +L + + + + +
Sbjct: 420 YFLQGTTLAGE-ANVIDKEKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNI-MISFGA-- 475
Query: 157 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTE-SIGGKKYGLVIVDDYSRW 215
AK+V T L+ +H DL+G SIG +Y + +DD++R
Sbjct: 476 ----------------AKHV--TKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRR 517
Query: 216 TWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNF 275
TW+ F+R KDE + F + TQ++ + + + +D+G EF N+ F+ +G+ +
Sbjct: 518 TWIYFIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHR 577
Query: 276 SCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKT 335
+C TPQQNGV ER NRT+ R M+ ES + K WAEA +TA ++ N I
Sbjct: 578 TCAYTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDI 637
Query: 336 PYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIH 395
P E G PD FGS Y+ + + GK + +A K FLGY + K F+++ +
Sbjct: 638 PEEKWTGHPPDYKILKKFGSVAYIHSDQ---GKLNPRAKKGIFLGYPDGVKRFKVWLLED 694
Query: 396 QTVEESIQIRF-DGKLGSE--KSKLFERFADLSIDCSEANQPKNSSEDVAPEAEAS---- 448
+ S I F + ++ E K+ + E L+ + KN S D ++E
Sbjct: 695 RKCVVSRDIVFQENQMYKELQKNDMSEEDKQLTEVERTLIELKNLSADDENQSEGGDNSN 754
Query: 449 -EAAPTTSDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGLVS----- 502
E A TT + K+ ++ + A R R ++ + + LV
Sbjct: 755 QEQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTM 814
Query: 503 -----LIEPKSVDEAL---EDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFR 554
+ EP++ +EA+ E + W EE+D KND W ++ KP+G VIG KW+F+
Sbjct: 815 TEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFK 874
Query: 555 NKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQM 613
K G E R KARLVA+G+SQ+EGIDY E FSPV + +IR L+S V ++ L Q+
Sbjct: 875 RKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQL 934
Query: 614 DVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQN 673
DVK+AFL+G + E + + QP G+ED+ + V LKKSLYGLKQ+PR W +R SF++ +
Sbjct: 935 DVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINS 994
Query: 674 EFVRGKGDNTLFCITYKNDILI-VQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGEL 732
+ R K + ++ + I + +YVDD++ S N ++ + + EFEM +G
Sbjct: 995 GYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPA 1054
Query: 733 KYFLGIQI--DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHPTCIL----EKEEVS 786
+ LG++I ++ G+ + Q +Y +L+ F M +S+TP+ L EK
Sbjct: 1055 RKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLAR 1114
Query: 787 SKVCQKL--YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGT 843
KL Y IGS++Y + SRPD+ + V + +RF S P + H AVK +++Y+KGT
Sbjct: 1115 DAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGT 1174
Query: 844 TNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTA 903
+ L ++K ++ + G+CD+D+A D R+S +G G N ++W S Q +ALST
Sbjct: 1175 QDTCLRFKKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRVVALSTT 1234
Query: 904 EAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKY 963
EAEY++ A + IW++ + G V + CD+ +AI+LSKN + H R KHI+V+Y
Sbjct: 1235 EAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTKHIDVRY 1294
Query: 964 HYIRDHVQKGTLSLEYVDTDHQWADIFTK 992
H+IR+ + G + + + T ADIFTK
Sbjct: 1295 HFIREKIADGEIQVVKISTTWNPADIFTK 1323
>At4g03810 putative retrotransposon protein
Length = 964
Score = 484 bits (1246), Expect = e-136
Identities = 297/921 (32%), Positives = 486/921 (52%), Gaps = 55/921 (5%)
Query: 97 IYKIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEA 156
IY I++ + S + + ++W RLGH + + I +L L+ Y S
Sbjct: 65 IYNIRTKKFKSNDL-------NPTFLWHCRLGHINEKHIQKLHSDGLLNSFD---YESYE 114
Query: 157 LCEACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFGPVKTESIGGKKYGLVIVDDYSRWT 216
CE+C GK TK PF + ++ L L+H D+ GP+ T + G +Y + DD+SR+
Sbjct: 115 TCESCLLGKMTKAPFTGHSERASDL-LGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYG 173
Query: 217 WVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFS 276
+V ++HK ++ F F +VQ +F S+ +RSD GGE+ ++ F + GI +
Sbjct: 174 YVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVSQLT 233
Query: 277 CPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTP 336
P TPQ NGV ER+NRTL +M R+MM + + W A+ T+ ++ N + + EKTP
Sbjct: 234 PPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSV-EKTP 292
Query: 337 YELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQ 396
YE+ G+ P++S+ +G Y K K+ KCYF+GY + +KG+ Y H
Sbjct: 293 YEIWTGKVPNLSFLKIWGCESYAKRLITD--KLGPKSDKCYFVGYPKETKGYYFY---HP 347
Query: 397 TVEESIQIRFDGKLGSEKSKLFERFADLSIDCSEANQPKNSSEDVAPEAEASEAAPTTSD 456
T + +R L E+ L + + + E +P+ PT+ +
Sbjct: 348 TDNKVFVVRNGAFL--EREFLSKGTSGSKVLLEEVREPQGD-------------VPTSQE 392
Query: 457 QLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKPSE--ETLLSLKGL--VSLIEPKSVDEA 512
+ Q R V E I+ + RS +P + ++ L + EP S +EA
Sbjct: 393 EHQLDLRRVV----EPILVEPEVRRSERSRHEPDRFRDWVMDDHALFMIESDEPTSYEEA 448
Query: 513 L---EDKGWILGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFRNKLNEKGEVTRNKAR 569
L + W+ + E++ ++N VWTL+ P G I KW+F+ K++ G + KA
Sbjct: 449 LMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAG 508
Query: 570 LVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQMDVKSAFLNGYISEEVY 629
LVA+GY Q GIDY ET+SPVA L++IR+L++ + +++ + QMDVK+AFLNG + E VY
Sbjct: 509 LVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVY 568
Query: 630 VKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQNEFVRGKGDNTLFCITY 689
+ QP GF + V KL +S+YGLKQA R+W R + + + +F+R + + ++ T
Sbjct: 569 MTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTS 628
Query: 690 KNDILIVQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGELKYFLGIQI--DQRPGVT 747
+ + + +YVDDI+ + L + + + F M MGE Y LGI+I D+ +
Sbjct: 629 GSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKII 688
Query: 748 YIHQKKYTLELLKKFNMSDCNISKTPMHPTCILEKEEVSS------KVCQKLYRGMIGSL 801
+ Q Y ++L +FNM D PM L K + S ++ + Y IGS+
Sbjct: 689 GLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSI 748
Query: 802 LY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSG 860
+Y + +RPD+ ++ + +R+QSDP E+H V+ I KYL+ T + L+Y + E +SG
Sbjct: 749 MYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSG 808
Query: 861 FCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWM 920
+ DA F D+ + +S SG L V+W S +Q+T+A ST EAEY++A+ + +W+
Sbjct: 809 YTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWI 868
Query: 921 KNHLEDYGLSLK---KVPIYCDNTAAISLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSL 977
+ + + G+ + +YCDN AI+ +K P H ++KHI+ +YH IR+ + +G + +
Sbjct: 869 RKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKI 928
Query: 978 EYVDTDHQWADIFTKPLAEDR 998
V TD AD FTKPL + +
Sbjct: 929 SRVSTDANVADHFTKPLPQPK 949
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 482 bits (1240), Expect = e-136
Identities = 308/996 (30%), Positives = 520/996 (51%), Gaps = 47/996 (4%)
Query: 39 GKIPVINDVLLVEGLFHNLLSISQIANKGYDVIFNQTGCKAVSQTNGSVLFSGKRKNYIY 98
G + + +V + + NLLS+ GY ++ SVL + +R +Y
Sbjct: 338 GMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIA--GDSVLLTVRRCYTLY 395
Query: 99 KIKSSELLSQKVKCLMSVNDEQWIWLRRLGHASLRKISQLSKLNLIRGLPRLKYSSEALC 158
++ + + + ++ D+ +W RRLGH S + + L K L L + K S C
Sbjct: 396 LLQWRPVTEESLS-VVKRQDDTILWHRRLGHMSQKNMDLLLKKGL---LDKKKVSKLETC 451
Query: 159 EACQKGKFTKKPFKAKNVVSTTRPLELLHIDLFG-PVKTESIGGKKYGLVIVDDYSRWTW 217
E C GK + F T LE +H DL+G P S+G +Y + +DDY+R
Sbjct: 452 EDCIYGKAKRIGFNLAQH-DTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVR 510
Query: 218 VKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQGISHNFSC 277
+ FL+ KDE F + V+ + + T+R+D+G EF N++F+E + +GI + +C
Sbjct: 511 IYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTC 570
Query: 278 PRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIRPILEKTPY 337
TPQQNGV ER NRTL E R+M+ +S + K WAEA +T + N + + P
Sbjct: 571 AYTPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPD 630
Query: 338 ELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFRIYNIIHQT 397
+ G+ P SY FG ++ +T + GK + +A K +GY KG++I+ + +
Sbjct: 631 KRWSGKSPIYSYLRRFGCIAFV-HTDD--GKLNPRAKKGILVGYPIGVKGYKIWLLEEKK 687
Query: 398 VEESIQIRFDGKLGSE---KSKLFER---------FADLSIDCSEANQPKNSSEDVAPEA 445
S + F + +SK E+ + DL +D E V ++
Sbjct: 688 CVVSRNVIFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQS 747
Query: 446 EASEAAPTT---SDQLQKKKRIAVSHPEELIIGNKDAPVRTRSMLKPSEETLLSLKGLVS 502
+ + TT S+ + + I S ++ ++D R+ ++ +E L+ + L +
Sbjct: 748 PFNPSPATTQTYSEGVNSETDIIQSPLSYQLVRDRDRRT-IRAPVRFDDEDYLA-EALYT 805
Query: 503 L-----IEPKSVDEALEDKGWI---LGMQEELDQFTKNDVWTLMSKPKGFHVIGTKWVFR 554
IEP EA W L M EE++ KN WT++ +P+ VIG++W+++
Sbjct: 806 TEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYK 865
Query: 555 NKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIRLLISFSVNHNITLHQM 613
KL G E R KARLVA+GY+Q++GIDY E F+PV + +IR+L+S ++ L Q+
Sbjct: 866 FKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQL 925
Query: 614 DVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQAPRAWYERLSSFLLQN 673
DVK+AFL+G + E++Y+ P G+E+ D V L KSLYGLKQAP+ W E+ ++++ +
Sbjct: 926 DVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEI 985
Query: 674 EFVRGKGDNTLFCITYKNDILI-VQIYVDDIIFGSANPSLCKEFSKLMQAEFEMSMMGEL 732
F+R D+ + + + + +YVDD++ + N + + + F+M +G
Sbjct: 986 GFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAA 1045
Query: 733 KYFLGIQI--DQRPGVTYIHQKKYTLELLKKFNMSDCNISKTPMHP-----TCILEKEEV 785
K LG++I ++ ++ Q Y ++L+ +NM++ TP+ +EK+E
Sbjct: 1046 KRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQ 1105
Query: 786 SSKVCQKL-YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILKYLKGT 843
+ + Y +GS++Y + +RPD+ + V + +R+ S P H VK +L+Y+KG+
Sbjct: 1106 DEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGS 1165
Query: 844 TNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLGSNLVTWSSKRQNTIALSTA 903
L Y+++S++ + G+CDAD A + R+S +G LG + ++W S +Q +ALST
Sbjct: 1166 LGTKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTT 1225
Query: 904 EAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAISLSKNPILHSRAKHIEVKY 963
EAEY+S + +WMK L+++G K V I+CD+ +AI+LSKN + H R KHI+V+Y
Sbjct: 1226 EAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRY 1285
Query: 964 HYIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRF 999
YIRD + G + +DT+ ADIFTK + ++F
Sbjct: 1286 QYIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNKF 1321
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 474 bits (1219), Expect = e-133
Identities = 303/844 (35%), Positives = 454/844 (52%), Gaps = 73/844 (8%)
Query: 210 DDYSRWTWVKFLRHKDETHTIFTNFITQVQKEFQTSVITVRSDHGGEFENKAFEELFNSQ 269
+D+SR WV FL+ KDE FT + V+ + + + +R+D+G EF N F+E+ +
Sbjct: 319 NDWSRKVWVYFLKTKDEAFASFTEWKKMVETQSERKLKHLRTDNGLEFCNHKFDEVCKKE 378
Query: 270 GISHNFSCPRTPQQNGVVERKNRTLQEMARTMMQESSMAKHLWAEAINTAYYIHNIISIR 329
GI + +C TPQQNGV ER NRT+ R+M+ ES + K WA+A +TA Y+ N
Sbjct: 379 GIVRHRTCTYTPQQNGVAERLNRTIMNKVRSMLSESGLDKKFWAKAASTAVYLINRSPSS 438
Query: 330 PILEKTPYELCKGRQPDISYFHPFGSTCYMLNTKEQLGKFDSKALKCYFLGYSERSKGFR 389
I K P EL P+ S FG Y+ + Q GK D +A K F+GY KGFR
Sbjct: 439 SIENKIPEELWTSAVPNFSGLKRFGCVVYVYS---QEGKLDPRAKKGVFVGYPNGVKGFR 495
Query: 390 IYNIIHQ--TVEESIQIR-----------------FDGKLGSEKSKLFERFADLSIDCSE 430
++ I + ++ ++ R FD L + + FE + D
Sbjct: 496 VWMIEEERCSISRNVVFREDVMYKDILNQSTSGMSFDFPLATNRIPSFECAGNRKED-EI 554
Query: 431 ANQPKNSSEDVAPEAEASEAAPTTSDQL--QKKKRIAVSHPEELIIGNKDAPVRTRSMLK 488
+ Q S +D +E S + +S Q Q+ +IA P+ P + R +
Sbjct: 555 SVQGGVSDDDTKQSSEESPISTGSSGQNSGQRTYQIARDKPKR----QTKIPDKLRDY-E 609
Query: 489 PSEETLLSLKGLVSLI-------EPKSVDEALED---KGWILGMQEELDQFTKNDVWTLM 538
+EE L + G +I EP +AL+D K W+ + EE++ KN+ W L+
Sbjct: 610 LNEEVLDEIAGYAYMITEDGGNPEPNDYQKALQDSDYKMWLKAVDEEIESLLKNNTWVLV 669
Query: 539 SKPKGFHVIGTKWVFRNKLNEKG-EVTRNKARLVAQGYSQQEGIDYTETFSPVARLEAIR 597
++ + IG KWVF+ K G E R KARLV +GYSQ+EGIDY E FSPV + +IR
Sbjct: 670 NRDQFQKPIGCKWVFKRKSGIVGVEKPRFKARLVVKGYSQKEGIDYQEIFSPVVKHVSIR 729
Query: 598 LLISFSVNHNITLHQMDVKSAFLNGYISEEVYVKQPPGFEDDKYPDHVYKLKKSLYGLKQ 657
LL+S + ++ L QMDVK+AFL+GY+ E +Y++QP G+ +YPD V LK+SLYGL+Q
Sbjct: 730 LLLSMVTHCDMELQQMDVKTAFLHGYLDETIYIEQPEGYVHKRYPDKVCLLKRSLYGLRQ 789
Query: 658 APRAWYERLSSFLLQNEFVRGKGDNTLFCITYK----NDILIVQIYVDDIIFGSANPSLC 713
+PR W R + F+ + + R K D+ C+ +K + + + +YVDDI+ S +
Sbjct: 790 SPRQWNNRFNEFMQKIGYERSKYDS---CVYFKELQSGEYIYLLLYVDDILIASRDKRTV 846
Query: 714 KEFSKLMQAEFEMSMMGELKYFLGIQI--DQRPGVTYIHQKKYTLELLKKFNMSDCNISK 771
+ L+ +EFEM +G+ K LG++I D++ G I Q+ Y L++L F M
Sbjct: 847 CDLKALLNSEFEMKDLGDAKKILGMEIVRDRKAGTMSISQEGYLLKVLGNFGMDQAKPVF 906
Query: 772 TPMHPTCILE---KEEV--SSKVCQKL-YRGMIGSLLY-LTASRPDILFSVHLCARFQSD 824
TPM L+ EEV S+V + + Y+ +GSL+Y + +RPD+ SV L RF S
Sbjct: 907 TPMGAHFKLKPATDEEVMRQSEVMRAVPYQSAVGSLMYSMIGTRPDLAHSVGLVCRFMSK 966
Query: 825 PRETHLTAVKRILKYLKGTTNLGLMYRKTSEYTLSGFCDADFAGDRVERKSTSGSCHFLG 884
P + H AVK IL+Y++G+ + L Y+ E L G+CD+D+A D+ R+STSG
Sbjct: 967 PLKEHWQAVKWILRYIRGSIDRKLCYKNEGELILEGYCDSDYAADKEGRRSTSG------ 1020
Query: 885 SNLVTWSSKRQNTIALSTAEAEYVSAATCCTQTIWMKNHLEDYGLSLKKVPIYCDNTAAI 944
+ALS+ EAEY++ + IW+K H+ + G K V I+CD+ +AI
Sbjct: 1021 ----------VKVVALSSTEAEYMALTDGAKEAIWLKGHVSELGFVQKTVNIHCDSQSAI 1070
Query: 945 SLSKNPILHSRAKHIEVKYHYIRDHVQKGTLSLEYVDTDHQWADIFTKPLAEDRFLFILE 1004
+L+KN + H R KHI+VKYH+IRD V G + + +DT+ ADIFTK L +F LE
Sbjct: 1071 ALAKNAVYHERTKHIDVKYHFIRDLVNNGEVQVLKIDTEDNPADIFTKVLPVSKFQDALE 1130
Query: 1005 NLNM 1008
L +
Sbjct: 1131 LLRV 1134
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,953,260
Number of Sequences: 26719
Number of extensions: 997979
Number of successful extensions: 3021
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2404
Number of HSP's gapped (non-prelim): 280
length of query: 1017
length of database: 11,318,596
effective HSP length: 109
effective length of query: 908
effective length of database: 8,406,225
effective search space: 7632852300
effective search space used: 7632852300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0166.5