BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0150.6
(396 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76510 putative DNA-binding protein 452 e-127
At1g20910 unknown protein 407 e-114
At2g17410 unknown protein 243 2e-64
At2g17400 hypothetical protein 72 5e-13
At1g76110 hypothetical protein 53 3e-07
At1g04880 unknown protein 45 7e-05
At3g13350 unknown protein 40 0.002
At1g55650 unknown protein 40 0.002
At4g00440 unknown protein 39 0.007
At1g63490 RB-binding protein -like 34 0.12
At5g40700 unknown protein 34 0.16
At3g15120 chaperone-like ATPase 33 0.21
At1g20970 hypothetical protein 33 0.21
At4g32615 putative protein 33 0.36
At5g04860 unknown protein 32 0.47
At3g50240 kinesin-related protein (kicp-02) 32 0.80
At4g32620 putative protein 31 1.0
At2g35600 unknown protein 31 1.0
At5g28320 putative protein 31 1.4
At3g54670 structural maintenance of chromosomes (SMC) - like pro... 31 1.4
>At1g76510 putative DNA-binding protein
Length = 434
Score = 452 bits (1163), Expect = e-127
Identities = 241/406 (59%), Positives = 281/406 (68%), Gaps = 37/406 (9%)
Query: 14 VDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNRIGDSTPNNMLEV 73
V +DTT D D + +P+ QI +E + Q D R GD +
Sbjct: 40 VPEDTT---HTLDSDVHLSDAPIA------NQIEANEEVGGQNSVDGRNGDVDQSEKKIT 90
Query: 74 KTGSENQLELEDVKTPLHQELVTPKSRERNVREMKS-VLNDTEVVDYDEPGASLEREAFM 132
G + + L + PL + +P E +V++ K+ +L+D E + DE GA ++EAF+
Sbjct: 91 SDGGQEETTLGE-SNPLKGDPSSPHVPEESVKKWKTWLLSDAEAREVDEAGAPQDQEAFI 149
Query: 133 KELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKT 192
KE+E F +E LEFK PKFYG+PLNCLKLWRAVI+LGGYDVVT SKLWRQVGESFHPPKT
Sbjct: 150 KEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKLWRQVGESFHPPKT 209
Query: 193 CTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVYQAPGSGRARRD 252
CTTVSWTFRIFYEKALLEYEKH R+ GEL LP S +EKE + +QA GSGR RRD
Sbjct: 210 CTTVSWTFRIFYEKALLEYEKHLRQNGELNLPGSASLPSSGIEKEASSHQASGSGRTRRD 269
Query: 253 AAARAMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKNLKSIA---------------- 296
AAARAMQGWH+QRLLG GEV EP++K+K N T K +KNLK+I
Sbjct: 270 AAARAMQGWHSQRLLGSGEVTEPIVKEKGLNSTPK-QKNLKNIGVQKQKTTTGMDLVFSH 328
Query: 297 ---------VVDVGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGM 347
V+DVGPPADWVKINVRETKDCFE++ALVPGLLREEVRVQSDP GRLVI G
Sbjct: 329 ESEKQSTAEVIDVGPPADWVKINVRETKDCFEIFALVPGLLREEVRVQSDPAGRLVIAGQ 388
Query: 348 PEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQ 393
PE +DNPWGITPFKKVVN PARIDPL TSAVVSLHGRLFVRVPFEQ
Sbjct: 389 PEQLDNPWGITPFKKVVNFPARIDPLHTSAVVSLHGRLFVRVPFEQ 434
>At1g20910 unknown protein
Length = 398
Score = 407 bits (1046), Expect = e-114
Identities = 211/357 (59%), Positives = 257/357 (71%), Gaps = 27/357 (7%)
Query: 62 IGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDE 121
+GD NN + G+ ++ + KT Q +++PK+ N ++ K+ L D+E DE
Sbjct: 44 LGDGQANNGHGMNGGAVGVVDHSERKTRRVQ-MLSPKTEGENAKKRKTWLLDSEAQGTDE 102
Query: 122 PGASLEREAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWR 181
G +E+ AF++E+E FY+E LEFKPPKFYG+PLN LKLWRAV+ LGGY+VVT +KLWR
Sbjct: 103 AGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKLWR 162
Query: 182 QVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVY 241
QVGESF+PPKTCTTVS+TFR FYEKALLEYEK R GEL LP SSVEKE + +
Sbjct: 163 QVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTLILSSSVEKEPSSH 222
Query: 242 QAPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFNPTTKREKNLKSIA----- 296
Q GSGRARRD+AARAMQGWHAQRL+G GEV P +KDK T K +K LKSI
Sbjct: 223 QGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAVKDKGLISTPKHKK-LKSIGLQKHK 281
Query: 297 --------------------VVDVGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQS 336
VVDVGP ADWVKINV+E+KD FE++ALVPGLLR+EVR+QS
Sbjct: 282 QQTSMDHVVTNEADKQLAAEVVDVGPVADWVKINVKESKDSFEIFALVPGLLRKEVRIQS 341
Query: 337 DPVGRLVITGMPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQ 393
DP G++VITG PE +DNPWGITPFKK+V+L ARIDPL TSAV+S+HGRLF+RVPFEQ
Sbjct: 342 DPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDPLHTSAVMSMHGRLFIRVPFEQ 398
>At2g17410 unknown protein
Length = 287
Score = 243 bits (619), Expect = 2e-64
Identities = 129/218 (59%), Positives = 154/218 (70%), Gaps = 32/218 (14%)
Query: 203 FYEKALLEYEKHKREIGELQLPVGVFPQPSSVEKETTVYQAPGSGRARRDAAARAMQGWH 262
F +ALLEYE+HK GELQ+P+ + +P +++ QA GSGRARRDAA+RAMQGWH
Sbjct: 73 FIFQALLEYERHKVSEGELQIPLPLELEPMNIDN-----QASGSGRARRDAASRAMQGWH 127
Query: 263 AQRLLGYGEVAEPVIKDKNFNPTTKREKNLKS---------------------------I 295
+QRL G GEV++P IKDKN KREK + + +
Sbjct: 128 SQRLNGNGEVSDPAIKDKNLVLHQKREKQIGTTPGLLKRKRAAEHGAKNAIHVSKSMLDV 187
Query: 296 AVVDVGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPEHIDNPW 355
VVDVGPPADWVKINV+ T+DCFEVYALVPGL+REEVRVQSDP GRLVI+G PE+ NPW
Sbjct: 188 TVVDVGPPADWVKINVQRTQDCFEVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNPW 247
Query: 356 GITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQ 393
G TPFKKVV+LP RIDP TSAVV+L+G+LFVRVP EQ
Sbjct: 248 GATPFKKVVSLPTRIDPHHTSAVVTLNGQLFVRVPLEQ 285
>At2g17400 hypothetical protein
Length = 513
Score = 72.0 bits (175), Expect = 5e-13
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 85 DVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAFMKELENFYRERSL 144
D+ +H+ + TP + +R +S L D + D +E G ++ AFMKEL++F+RER++
Sbjct: 439 DLNNGVHKIVRTPPVFDGTMRAKRSFLLD-DASDGNESGTEEDQSAFMKELDSFFRERNM 497
Query: 145 EFKPPKFYGEPLNCLK 160
+FKPPKFYGE LNCLK
Sbjct: 498 DFKPPKFYGEGLNCLK 513
>At1g76110 hypothetical protein
Length = 338
Score = 53.1 bits (126), Expect = 3e-07
Identities = 41/135 (30%), Positives = 57/135 (41%), Gaps = 7/135 (5%)
Query: 115 EVVDYDEPGASLE-----REAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLG 169
++ +Y EP A E F L F+ S +F P G+ L+ L+ V R G
Sbjct: 23 KIKEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRG 82
Query: 170 GYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHK--REIGELQLPVGV 227
GY+ V K WR+VG F T T+ S+ R Y L YE+ G L P+
Sbjct: 83 GYEKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIAT 142
Query: 228 FPQPSSVEKETTVYQ 242
F S KE + +
Sbjct: 143 FHANPSTSKEMALVE 157
>At1g04880 unknown protein
Length = 448
Score = 45.1 bits (105), Expect = 7e-05
Identities = 29/103 (28%), Positives = 44/103 (42%)
Query: 131 FMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPP 190
FM LE + +F P G L+ KL+ V GG + + + W++V +F P
Sbjct: 35 FMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFP 94
Query: 191 KTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGVFPQPSS 233
T T S+ R +Y L YE+ Q+P PS+
Sbjct: 95 PTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSA 137
>At3g13350 unknown protein
Length = 319
Score = 40.4 bits (93), Expect = 0.002
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 131 FMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPP 190
F ++L F S K P G L+ +L+ V GG + V + W++V +F P
Sbjct: 46 FWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFP 105
Query: 191 KTCTTVSWTFRIFYEKALLEYE 212
T T+ S+ R +Y K L + E
Sbjct: 106 TTITSASFVLRKYYLKFLFQLE 127
>At1g55650 unknown protein
Length = 337
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/84 (28%), Positives = 42/84 (49%)
Query: 129 EAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFH 188
E F + L +F+ +FK P G+ L+ +L+ V GG + V + ++V ++F+
Sbjct: 38 ELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRCKEVIDAFN 97
Query: 189 PPKTCTTVSWTFRIFYEKALLEYE 212
T T ++ R Y K L E+E
Sbjct: 98 FKTTITNSAFVLRKSYLKMLFEFE 121
>At4g00440 unknown protein
Length = 831
Score = 38.5 bits (88), Expect = 0.007
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 2 EGGEKPVDNMEIVDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNR 61
E EK VD ++D+T N D +AGS+ V+ PN L ++P++
Sbjct: 499 EPNEKSVD----IEDETA----NEDNMFSAGSADDVMIPNELDEVPEEA-------SSTL 543
Query: 62 IGDSTPNNMLEVKTGSEN--QLELEDVKTPLHQELVTPKSRERNVREMKSVLND 113
IGD + + + S N Q LE+ + PL + +P E KS + D
Sbjct: 544 IGDLSKVEAQDEQRDSINSKQTSLEESQPPLSSSVASPSHCLAQTEECKSAITD 597
>At1g63490 RB-binding protein -like
Length = 1458
Score = 34.3 bits (77), Expect = 0.12
Identities = 23/63 (36%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 124 ASLEREAFMKELENFYRE---RSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLW 180
+S + F E F E + L+ K F GE L+ KL+ AV R GGY+ V K W
Sbjct: 93 SSCNSKTFKLEYNRFLEEHLGKKLK-KRVVFEGEELDLCKLFNAVKRFGGYEKVVKGKKW 151
Query: 181 RQV 183
+V
Sbjct: 152 GEV 154
>At5g40700 unknown protein
Length = 302
Score = 33.9 bits (76), Expect = 0.16
Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 23 QNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNRIGDSTPNNMLEVKTGSENQLE 82
Q+SD D + + N+L + KDEV ++GD+ + S+ +L ++ E
Sbjct: 96 QSSDSDPKQEPESVAVLLNTLETLTKDEVKEEEGDETELVLSSSEELVLSIEKDDE---- 151
Query: 83 LEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAFMKELE 136
P+ + + + +++ + +D E ++ E G +++ F+ E E
Sbjct: 152 ------PVRTNVAVLEQED----DLQVIHDDKEKDNHSEDGELVKKSCFVGEKE 195
>At3g15120 chaperone-like ATPase
Length = 1954
Score = 33.5 bits (75), Expect = 0.21
Identities = 25/102 (24%), Positives = 48/102 (46%), Gaps = 9/102 (8%)
Query: 27 KDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDD--DNRIGDSTPNNMLEV-----KTGSEN 79
+++ A + L + A++ + E + G D DN I DS E KTGSE
Sbjct: 226 QEKKATKRSVFLESENEAEVDRTETESEDGTDSTDNEIDDSDEEGESETQCSAEKTGSET 285
Query: 80 QLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDE 121
+ +E+++ + + ++ RN +M+ + N+ E+ DE
Sbjct: 286 EANVEEMRADTNVTMEAVQNESRN--QMEELENEIEMGVEDE 325
>At1g20970 hypothetical protein
Length = 1498
Score = 33.5 bits (75), Expect = 0.21
Identities = 26/102 (25%), Positives = 43/102 (41%), Gaps = 4/102 (3%)
Query: 2 EGGEKPVDNMEIVDDDTTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNR 61
EG VD I DDD + Q+S + + P + +IPK EV + +
Sbjct: 91 EGENVKVDAPSIADDDVLGVSQDSQTLEKSELESTDDGPEEVVEIPKSEV---EDSLEKS 147
Query: 62 IGDSTPNNMLEVKTGSENQLELEDVKTPLHQELVTPKSRERN 103
+ P N +++G E ++E ++ LH V K +N
Sbjct: 148 VDQQHPGNG-HLESGLEGKVESKEEVEQLHDSEVGSKDLTKN 188
>At4g32615 putative protein
Length = 315
Score = 32.7 bits (73), Expect = 0.36
Identities = 30/116 (25%), Positives = 53/116 (44%), Gaps = 9/116 (7%)
Query: 15 DDD---TTLLPQNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNRIGDSTPNNML 71
DDD TT PQ+ A S P +I +E +D GDDD+ D
Sbjct: 77 DDDYYATTAPPQSLWSTSEASHSDAKDVPAE--EIESEEDTLDDGDDDDVEEDHEQGTET 134
Query: 72 EVKTGSENQL-ELEDVKTP---LHQELVTPKSRERNVREMKSVLNDTEVVDYDEPG 123
+V +E ++ + +V+ P ++L + +++ + E++++L D V DE G
Sbjct: 135 QVHPEAEPEVKKAPEVRAPPKEAERQLSKKERKKKELAELEALLADFGVATKDENG 190
>At5g04860 unknown protein
Length = 782
Score = 32.3 bits (72), Expect = 0.47
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 23 QNSDKDQNAGSSPMVLAP----NSLAQIPKDEVMVDQGD-----DDNRIGDST---PNNM 70
+ S+KD ++GS +P +S + P D +D+GD ++N+ +S+ P N
Sbjct: 236 KESEKDGSSGSGSDGKSPERNLDSDSSYPFDTDSLDEGDAADESEENKENESSLADPVNY 295
Query: 71 LEVKTGSENQLELEDVKTPLHQELVTPKSRERNVRE---MKSVLNDTEVVDYDEPGASLE 127
+++ + + V P ++L+ R V ND VV ++ +
Sbjct: 296 KTLRSANWARGSFHTVTNPEDEDLIYYSHRSPLAETGHCSDEVSND--VVSLEQAKGQMS 353
Query: 128 REAFMKELENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDV 173
++ + +++R L F+ PK GEPL L + + GG D+
Sbjct: 354 KKRMLS-----WKKRKLSFRSPKQKGEPL----LKKDCLEEGGDDI 390
>At3g50240 kinesin-related protein (kicp-02)
Length = 1051
Score = 31.6 bits (70), Expect = 0.80
Identities = 32/148 (21%), Positives = 58/148 (38%), Gaps = 10/148 (6%)
Query: 72 EVKTGSENQLELEDVKTPLHQELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAF 131
EV+ E ++LE L SRE ++ K V D +D E G ++
Sbjct: 419 EVQVMREKIMKLESANEEL--------SRELHIYRSKRVTLDYCNIDAQEDGVIFSKDDG 470
Query: 132 MKE-LENFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPP 190
+K E+ + + E + + W +R ++L +++ E
Sbjct: 471 LKRGFESMDSDYEMSEATSGGISEDIGAAEEWEHALRQNSMGKEL-NELSKRLEEKESEM 529
Query: 191 KTCTTVSWTFRIFYEKALLEYEKHKREI 218
+ C + T R +EK ++E EK KR +
Sbjct: 530 RVCGIGTETIRQHFEKKMMELEKEKRTV 557
>At4g32620 putative protein
Length = 1544
Score = 31.2 bits (69), Expect = 1.0
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 23 QNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDDDNRIGDSTPNNMLEVKTGSENQLE 82
++ +++ + P V A S Q +V ++ D D I +S L+++ G NQ
Sbjct: 152 ESDSQEELVVNIPKVTAEESSVQDQPSKV--EEKDSDKDIKESNSAAPLQLENGHSNQSP 209
Query: 83 LEDVKTPLHQELVTPKSRERNVREMKSVLNDTEV 116
++D +LV K R N R+ KS ++ V
Sbjct: 210 VKD------DQLVVVKQRNSNSRKRKSSASNRRV 237
>At2g35600 unknown protein
Length = 331
Score = 31.2 bits (69), Expect = 1.0
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 52 MVDQGDDDNRI---GDSTPNNMLEVKTGSENQLELEDVKTPLH-QELVTPKSRERNVREM 107
M D+G++D G +TPN VK+ + ++ + H Q TP S N+R+
Sbjct: 10 MADRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKPTPGSSSSNLRKF 69
Query: 108 KSVLNDTEVVDYDEPGAS 125
+E V Y PG S
Sbjct: 70 PDFDTASESVPYPYPGGS 87
>At5g28320 putative protein
Length = 967
Score = 30.8 bits (68), Expect = 1.4
Identities = 22/86 (25%), Positives = 38/86 (43%), Gaps = 4/86 (4%)
Query: 23 QNSDKDQNAGSSPMVLAPNSLAQIPKDEVMVDQGDD--DNRIGDSTPNNMLEVKTGSENQ 80
+ D ++ G S ++ S +P D + +GDD D R+G ST + E+ +
Sbjct: 342 EKRDVNKETGDSDEDISIQSQKSLPHDGLTHSEGDDDKDERLGTSTDSENTELSAFAVPM 401
Query: 81 LE--LEDVKTPLHQELVTPKSRERNV 104
L + D P H+ + K + NV
Sbjct: 402 LNGAMVDSGFPNHEMAASDKKKVSNV 427
>At3g54670 structural maintenance of chromosomes (SMC) - like
protein
Length = 1265
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 92 QELVTPKSRERNVREMKSVLNDTEVVDYDEPGASLEREAFMKELENFYRE 141
QE + RER + ++ ++ ND E + D R+ M+ELE F RE
Sbjct: 223 QEELKALKRERFLWQLYNIENDIEKANEDVDSEKSNRKDVMRELEKFERE 272
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,716,584
Number of Sequences: 26719
Number of extensions: 441596
Number of successful extensions: 999
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 975
Number of HSP's gapped (non-prelim): 56
length of query: 396
length of database: 11,318,596
effective HSP length: 101
effective length of query: 295
effective length of database: 8,619,977
effective search space: 2542893215
effective search space used: 2542893215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0150.6