BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0150.5
(168 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12910 flower pigmentation protein ATAN11 103 3e-23
At3g26640 transcriptional regulator protein, putative 93 6e-20
At5g24520 Ttg1 protein (emb|CAB45372.1) 60 4e-10
At1g49850 RING-H2 finger protein RHY1a 33 0.095
At2g33320 hypothetical protein 28 3.0
At3g43590 putative protein 27 4.0
At3g28920 unknown protein 27 4.0
At1g16610 arginine/serine-rich protein 27 4.0
At5g13840 cell cycle switch protein 27 6.8
At4g32551 Leunig protein 27 6.8
At2g36010 E2F transcription factor-3 E2F3 27 6.8
At2g15410 putative retroelement pol polyprotein 27 6.8
At2g29210 proline-rich protein like 26 8.9
At1g66150 putative receptor protein kinase (TMK1) 26 8.9
>At1g12910 flower pigmentation protein ATAN11
Length = 346
Score = 103 bits (258), Expect = 3e-23
Identities = 67/139 (48%), Positives = 78/139 (55%), Gaps = 25/139 (17%)
Query: 33 NWSVRHDKKYHLAIASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*G 92
NWSVR DKKY LAI SLLEQ PN +EIV LD+SN R P+ + H
Sbjct: 34 NWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGE---IRSDPNLSFEH---------- 80
Query: 93 VPAPRPPRHLQRLPPRVA---DLRRR*NPTLRR------NPSVDLKSLLNGNKSSEYCGP 143
P PP +P + DL + LR + V+LKS LN NK+SE+CGP
Sbjct: 81 ---PYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGP 137
Query: 144 LTSFDWNEAEPCRIGTSLT 162
LTSFDWNEAEP RIGTS T
Sbjct: 138 LTSFDWNEAEPRRIGTSST 156
>At3g26640 transcriptional regulator protein, putative
Length = 346
Score = 93.2 bits (230), Expect = 6e-20
Identities = 60/137 (43%), Positives = 74/137 (53%), Gaps = 25/137 (18%)
Query: 33 NWSVRHDKKYHLAIASLLEQCPNCIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*G 92
NWS+R DKKY LAI SL+EQ PN +EIV LD+SN R P+ H
Sbjct: 34 NWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGE---IRSDPNLCFEH---------- 80
Query: 93 VPAPRPPRHLQRLPPRVA---DLRRR*NPTLRR------NPSVDLKSLLNGNKSSEYCGP 143
P PP +P + DL + LR V+LKS L+ +K+SE+ GP
Sbjct: 81 ---PYPPTKTSFIPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGP 137
Query: 144 LTSFDWNEAEPCRIGTS 160
+TSFDWNEAEP RIGTS
Sbjct: 138 ITSFDWNEAEPRRIGTS 154
>At5g24520 Ttg1 protein (emb|CAB45372.1)
Length = 341
Score = 60.5 bits (145), Expect = 4e-10
Identities = 51/167 (30%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 4 PRKTSQRTTRLSETSHRPVESKAAKYQTKNWSVRHDKKYHLAIASLLEQCPNCIEIV*LD 63
P S+ T ++ S P+ + A S+R + +A+ S LE N I+I+ D
Sbjct: 6 PDSLSRSETAVTYDSPYPLYAMAFS------SLRSSSGHRIAVGSFLEDYNNRIDILSFD 59
Query: 64 DSNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRV-----ADLRRR*NP 118
SD + P P P PP L PP + DL
Sbjct: 60 -----SDSMTVKPL-----------PNLSFEHPYPPTKLMFSPPSLRRPSSGDLLASSGD 103
Query: 119 TLRR------NPSVDLKSLLNGNKSSEYCGPLTSFDWNEAEPCRIGT 159
LR + +V+ S+LN +K+SE+C PLTSFDWN+ EP R+GT
Sbjct: 104 FLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGT 150
>At1g49850 RING-H2 finger protein RHY1a
Length = 250
Score = 32.7 bits (73), Expect = 0.095
Identities = 23/55 (41%), Positives = 25/55 (44%), Gaps = 5/55 (9%)
Query: 68 RSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRR 122
RSDP S +S+ HH H H R GV H QR D RR P LRR
Sbjct: 17 RSDPALESDTSSYRHHSHHHHRRHGV-----HHHNQRHDSDGCDPLRRPTPRLRR 66
>At2g33320 hypothetical protein
Length = 602
Score = 27.7 bits (60), Expect = 3.0
Identities = 19/62 (30%), Positives = 25/62 (39%), Gaps = 3/62 (4%)
Query: 65 SNARSDPTRISPSSTRTHHQGHLHPR*GVPA---PRPPRHLQRLPPRVADLRRR*NPTLR 121
S + +P I S R++ + PR P PRPPR R R + R LR
Sbjct: 309 SERQHEPDFIDQSPFRSNDRSRKTPRRSTPMIEKPRPPRDYDRTSSRASPYLSRHGTPLR 368
Query: 122 RN 123
N
Sbjct: 369 SN 370
>At3g43590 putative protein
Length = 551
Score = 27.3 bits (59), Expect = 4.0
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 71 PTRISPSSTRTHHQGHLHPR*GVPA--PRPPRH 101
P+R PS HH HLH + P PPRH
Sbjct: 503 PSRWQPSHQHHHHHQHLHHHHQNHSYEPAPPRH 535
>At3g28920 unknown protein
Length = 312
Score = 27.3 bits (59), Expect = 4.0
Identities = 18/44 (40%), Positives = 22/44 (49%), Gaps = 8/44 (18%)
Query: 63 DDSNARSDPTRISPSSTRT-------HHQGHLHPR*GVPAPRPP 99
DDS+A P+ + PSST T HH+ H P P PR P
Sbjct: 105 DDSSAVPPPS-LLPSSTTTAAIEYQPHHRHHPPPPLAPPLPRSP 147
>At1g16610 arginine/serine-rich protein
Length = 414
Score = 27.3 bits (59), Expect = 4.0
Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
Query: 71 PTRISPSSTRTHHQGHLHPR*GVPAPR--------------PPRHLQRLPPRVADLRRR* 116
P R SP S G R G PR PP R PPR + R R
Sbjct: 241 PRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRG 300
Query: 117 NPTLRRNP 124
+P RR+P
Sbjct: 301 SPVRRRSP 308
Score = 26.9 bits (58), Expect = 5.2
Identities = 22/58 (37%), Positives = 25/58 (42%), Gaps = 6/58 (10%)
Query: 65 SNARSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRR 122
S R P RI S R L R PPR L R PPR + +RRR +RR
Sbjct: 289 SPPRGSPRRIRGSPVRRRSPLPLRRR-----SPPPRRL-RSPPRRSPIRRRSRSPIRR 340
>At5g13840 cell cycle switch protein
Length = 481
Score = 26.6 bits (57), Expect = 6.8
Identities = 14/44 (31%), Positives = 21/44 (46%)
Query: 68 RSDPTRISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVAD 111
RS+ + SP S + H P P+PPR + + P +V D
Sbjct: 124 RSNSSPSSPFSPSILGNDNGHSSDSSPPPKPPRKVPKTPHKVLD 167
>At4g32551 Leunig protein
Length = 931
Score = 26.6 bits (57), Expect = 6.8
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 87 LHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRRNPSVDLKSLLNGNKSSEYCGPLTS 146
LH G +P+ Q+LP D++ NP L +V SL+ S++ LT
Sbjct: 274 LHSTSGGMSPQVQTRNQQLPGSAVDIKSEINPVLTPRTAVPEGSLIGIPGSNQGSNNLTL 333
Query: 147 FDW 149
W
Sbjct: 334 KGW 336
>At2g36010 E2F transcription factor-3 E2F3
Length = 483
Score = 26.6 bits (57), Expect = 6.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 119 TLRRNPSVDLKSLLNGNKSSEYCGPLTSFDWNEAEPCRIGTSLTCR 164
T R+ V++KS GNKS+ P T N P + S +CR
Sbjct: 126 TPRKGGRVNIKSKAKGNKST----PQTPISTNAGSPITLTPSGSCR 167
>At2g15410 putative retroelement pol polyprotein
Length = 1787
Score = 26.6 bits (57), Expect = 6.8
Identities = 30/119 (25%), Positives = 50/119 (41%), Gaps = 28/119 (23%)
Query: 56 CIEIV*LDDSNARSDPTRISPSSTRTHHQGHLHPR*GV-------------PAPRPPRHL 102
C ++ L+ N + +P++ + T G+L R G+ P+PR R +
Sbjct: 956 CFQV--LNRYNMKLNPSKCTFGVTSGEFLGYLVTRRGIEANPKQISAIIDLPSPRNTREV 1013
Query: 103 QRLPPRVADLRRR*NPTLRRNPSVDLKSLLNGNKSSEYCGPLTSFDWNEAEPCRIGTSL 161
QRL R+A L R + + + + LL NK F+W+ E C G +L
Sbjct: 1014 QRLIGRIAALNRFISRS--TDKCLPFYQLLRANK---------RFEWD--EKCEEGETL 1059
>At2g29210 proline-rich protein like
Length = 878
Score = 26.2 bits (56), Expect = 8.9
Identities = 19/53 (35%), Positives = 22/53 (40%), Gaps = 1/53 (1%)
Query: 73 RISPSSTRTHHQGHLHPR*GVPAPRPPRHLQRLPPRVADLRRR*NPTLRRNPS 125
R SPS H+ P +P PP R PP A RR +P RR S
Sbjct: 330 RRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPP-PARRRRSPSPPARRRRS 381
>At1g66150 putative receptor protein kinase (TMK1)
Length = 942
Score = 26.2 bits (56), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 127 DLKSLLNGNKSSEYCGPLTSFDWNEAEPCRIGTSLTC 163
DL ++L+ KS P +SF W++ +PC+ T + C
Sbjct: 28 DLSAMLSLKKS---LNPPSSFGWSDPDPCK-WTHIVC 60
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.328 0.139 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,883,731
Number of Sequences: 26719
Number of extensions: 160850
Number of successful extensions: 496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 25
length of query: 168
length of database: 11,318,596
effective HSP length: 92
effective length of query: 76
effective length of database: 8,860,448
effective search space: 673394048
effective search space used: 673394048
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0150.5