BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0142.11
         (270 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g15840 unknown protein                                             370  e-103
At2g39730 Rubisco activase                                             40  0.001
At1g28580 lipase like protein                                          29  2.3
At4g22960 putative protein                                             28  6.8
At2g32120 70kD heat shock protein                                      28  6.8

>At3g15840 unknown protein
          Length = 268

 Score =  370 bits (951), Expect = e-103
 Identities = 174/256 (67%), Positives = 208/256 (80%), Gaps = 1/256 (0%)

Query: 14  PSNPITSRHTFLNVSLPRCYLVKERNVKVTRTINAAVAVATTPAQEIEEYKIPSWANFEL 73
           PS P++S+ +FL  S     L +    K+   + A VA    P +EI+EYK+PSWA FE+
Sbjct: 14  PSQPLSSKRSFLYSSRIGPILRRFPRKKLDLQVKA-VATTLAPLEEIKEYKLPSWAMFEM 72

Query: 74  GKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNEEFGIAFNGGFNQPIMCGGEPRAML 133
           G A VYWKTMNGLPPTSGEKLKLFYNP +++L  NE++G+AFNGGFNQPIMCGGEPRAML
Sbjct: 73  GTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAFNGGFNQPIMCGGEPRAML 132

Query: 134 RKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWDGPYRLQFQVPKVLQNKPIEFFNEG 193
           +KDRGKAD+PIY++QIC+PKHA+NLIFSFTNGVDWDGPYRLQFQVPK  QNKPIEFFNEG
Sbjct: 133 KKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQFQVPKRWQNKPIEFFNEG 192

Query: 194 LAEELGKEGACEQAIFPDSNKVITKCAMLGNLTVEGGDRCDLNLVEGCTDPSSHLYNPLA 253
           LA EL ++GACE+AIFPDSN V T+C M+ NLTVEGGDRC+L+LV GC D +S  +NP A
Sbjct: 193 LANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNLDLVPGCMDTNSEHFNPYA 252

Query: 254 NVDDGTCPLDLDSDSE 269
           NVDDG+CPL+L    E
Sbjct: 253 NVDDGSCPLELSDSDE 268


>At2g39730 Rubisco activase
          Length = 474

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 27/91 (29%), Positives = 42/91 (45%), Gaps = 9/91 (9%)

Query: 176 FQVPKVLQNKPIEFFNEGLAEELG------KEGACEQAIFPDSNKVITKCAMLGNLTVEG 229
           F+ P++   K +E+ N  + E+         E    QA   D+N         G    +G
Sbjct: 383 FEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDAN---ADAIGRGTFYGKG 439

Query: 230 GDRCDLNLVEGCTDPSSHLYNPLANVDDGTC 260
             + +L + EGCTDP +  ++P A  DDGTC
Sbjct: 440 AQQVNLPVPEGCTDPVAENFDPTARSDDGTC 470


>At1g28580 lipase like protein
          Length = 390

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 205 EQAIFPDSNKVITKCAMLG---NLTVEGGDRCDLNLVEGCTDPSSHL 248
           E A F   N+ ++ C   G   N TV  G +C  ++VE C DPS ++
Sbjct: 300 EPAKFGFMNRPLSACCGAGGPYNYTV--GRKCGTDIVESCDDPSKYV 344


>At4g22960 putative protein
          Length = 487

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 6   DLLFFSVPPSNPITSRHTFLNVSLPRCYLVKERNVKVTRTINAAVAVATTPAQEIEEYKI 65
           D  F +V   N  +S+ T + +S+ +  L   +N  ++  I    A  +  +Q+ +  + 
Sbjct: 292 DETFGNVETEN--SSKMTDVLISVEKTNLESTKNDIISEAITLVNADLSEKSQDDDVSQS 349

Query: 66  PSWANFELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQL 105
                  LG++S   K   GL    GE +K F+  + TQL
Sbjct: 350 VYEVQSLLGQSSPEGKGTKGLTQEEGELIKGFFEESVTQL 389


>At2g32120 70kD heat shock protein
          Length = 563

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 206 QAIFPDSNKVITKCAMLGNLTVEGGDRCDLNLVEGCT 242
           Q +F +  +++ +C  L +  V GGD  DL +V GC+
Sbjct: 329 QKVFEECERLVVQC--LRDARVNGGDIDDLIMVGGCS 363


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.317    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,761,885
Number of Sequences: 26719
Number of extensions: 299134
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 5
length of query: 270
length of database: 11,318,596
effective HSP length: 98
effective length of query: 172
effective length of database: 8,700,134
effective search space: 1496423048
effective search space used: 1496423048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)