BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0140.2
         (123 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At2g29210 proline-rich protein like                                    29  0.66
At3g07660 unknown protein                                              28  1.5
At4g00320                                                              27  3.3
At3g15510 jasmonic acid regulatory protein like                        27  3.3
At2g02490 hypothetical protein                                         27  3.3
At2g12720 putative protein                                             26  4.3
At4g24460 unknown protein                                              25  7.3
At5g55020 putative transcription factor MYB120 (MYB120)                25  9.5
At5g46120 putative protein                                             25  9.5
At4g24265 unknown protein                                              25  9.5
At4g23060 unknown protein                                              25  9.5
At3g24880 hypothetical protein                                         25  9.5

>At2g29210 proline-rich protein like
          Length = 878

 Score = 28.9 bits (63), Expect = 0.66
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 48  PRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKTALHNVTLLQHLRNTT 107
           P  P     + +PP++ H S  P   R     P +R   P PP     + + L + RN +
Sbjct: 343 PTPPARQRRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPL-YRRNRS 401

Query: 108 QSDIHRTGSSDTTVRK 123
            S ++R   S + + K
Sbjct: 402 PSPLYRRNRSRSPLAK 417


>At3g07660 unknown protein
          Length = 782

 Score = 27.7 bits (60), Expect = 1.5
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 60  PPSQHHHSCKPTVNRAPGWFPEKRGVFPEPPKTALHNVTLLQHLRNTTQS 109
           PP+ H +      N A    P+  GV+P PP TA      L H +  T +
Sbjct: 586 PPTMHQYLS----NGAYAQQPQASGVYPPPPGTATGGKYTLPHYKPGTNT 631


>At4g00320
          Length = 773

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 7/75 (9%)

Query: 17  LASMSTNARTLSPHILHLYQPMLVCHLDNLMPRTPCVIMIASTPPSQHHHSCKPTVNRAP 76
           L  +S   ++L    L +  P   CHLD +M  TP +  +  T   Q   S   + + +P
Sbjct: 196 LGKLSVVVKSLQRLTLKMSCP---CHLDGIMMNTPSLKYLKVTDERQESDSDNESDSDSP 252

Query: 77  GWFPEKRGVFPEPPK 91
            +F +    F + PK
Sbjct: 253 RYFYD----FEDMPK 263


>At3g15510 jasmonic acid regulatory protein like
          Length = 364

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 1/41 (2%)

Query: 57  ASTPPSQHHHSCKPTVNRAPGWFP-EKRGVFPEPPKTALHN 96
           AST   QHHH+   ++N  PG F     G+F +   T++++
Sbjct: 210 ASTGLHQHHHNVSRSMNFFPGKFSGGGYGIFSDGGNTSIYD 250


>At2g02490 hypothetical protein
          Length = 415

 Score = 26.6 bits (57), Expect = 3.3
 Identities = 12/34 (35%), Positives = 17/34 (49%)

Query: 56  IASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEP 89
           +  +P    H + K +VN+ PG FP    V P P
Sbjct: 112 VPPSPGHPPHQNAKISVNQYPGVFPIPHPVSPSP 145



 Score = 25.4 bits (54), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (49%)

Query: 56  IASTPPSQHHHSCKPTVNRAPGWFPEKRGVFPEP 89
           +  +P    H + K +VN+ PG FP    V P P
Sbjct: 83  VPPSPGHPPHQNTKISVNQYPGVFPIPHPVPPSP 116


>At2g12720 putative protein
          Length = 819

 Score = 26.2 bits (56), Expect = 4.3
 Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 1/52 (1%)

Query: 7   SSSAIDITTYLASMSTNARTLSPHILHLYQPMLVCHLDNLMPRTPCVIMIAS 58
           SS  +D+ T  AS    A   S H++++ +    C L N   + PC+  IA+
Sbjct: 671 SSRLLDVQTIDASRVQVAYEASLHVVNVDEKQCTCRLFN-KEKLPCIHAIAA 721


>At4g24460 unknown protein
          Length = 431

 Score = 25.4 bits (54), Expect = 7.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 54 IMIASTPPSQHHHSCKPTVNRAP 76
          +++A+TPP +  H+  PTV R+P
Sbjct: 4  VLMATTPPIRCLHASIPTVFRSP 26


>At5g55020 putative transcription factor MYB120 (MYB120)
          Length = 523

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 15/54 (27%), Positives = 20/54 (36%)

Query: 23  NARTLSPHILHLYQPMLVCHLDNLMPRTPCVIMIASTPPSQHHHSCKPTVNRAP 76
           NA++ S    H     L+  L    P TP  +     PP      C P  N+ P
Sbjct: 199 NAKSSSSFTFHTTTANLLHPLSPHTPNTPSQLSSTPPPPPLSSPLCSPRNNQYP 252


>At5g46120 putative protein
          Length = 83

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 78  WFPEKRGVFPEPPKTALHNVTLLQHLRNTTQSDIHRT 114
           W    +    EPP TA   +  L  +     S IHRT
Sbjct: 30  WLERNKRRHSEPPSTADQVIKFLDRIIRNKISSIHRT 66


>At4g24265 unknown protein
          Length = 140

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 14/45 (31%)

Query: 61 PSQHHH-SCK-----------PTVNRAPGWFPEKRGVFPEPPKTA 93
          PSQ HH SC+           PT    P WF E R +   PP+T+
Sbjct: 19 PSQPHHCSCEYSSTAVAVLVEPTAPPLPYWFDETRSLC--PPETS 61


>At4g23060 unknown protein
          Length = 484

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 12/37 (32%), Positives = 16/37 (42%)

Query: 45 NLMPRTPCVIMIASTPPSQHHHSCKPTVNRAPGWFPE 81
          N +P TP +      PPS H  S +    + P W  E
Sbjct: 56 NQVPHTPSLPNSTPPPPSHHQSSPRRRRKQKPMWEDE 92


>At3g24880 hypothetical protein
          Length = 1843

 Score = 25.0 bits (53), Expect = 9.5
 Identities = 15/43 (34%), Positives = 19/43 (43%), Gaps = 12/43 (27%)

Query: 36   QPMLVCHLDNLM-----PRTPCVIMIASTP-------PSQHHH 66
            Q  +  H DN +     P TPC I+  S+P       PS H H
Sbjct: 1620 QQQMQLHSDNSIQGQSSPATPCNILSTSSPSIAPAVAPSNHQH 1662


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.320    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,820,073
Number of Sequences: 26719
Number of extensions: 114688
Number of successful extensions: 276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 17
length of query: 123
length of database: 11,318,596
effective HSP length: 87
effective length of query: 36
effective length of database: 8,994,043
effective search space: 323785548
effective search space used: 323785548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)