BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0135.12
         (76 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g52140 unknown protein                                              25  5.3
At5g57910 unknown protein                                              25  7.0
At5g35980 protein kinase-like                                          25  7.0

>At5g52140 unknown protein
          Length = 277

 Score = 25.4 bits (54), Expect = 5.3
 Identities = 11/19 (57%), Positives = 14/19 (72%), Gaps = 4/19 (21%)

Query: 3   YTHRYSPNSELEALSHNPT 21
           YTH +SP+S    +SHNPT
Sbjct: 155 YTHTHSPSS----ISHNPT 169


>At5g57910 unknown protein
          Length = 207

 Score = 25.0 bits (53), Expect = 7.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 19 NPTHGSFAPLTS 30
          NPTHG F PL S
Sbjct: 2  NPTHGDFTPLNS 13


>At5g35980 protein kinase-like
          Length = 787

 Score = 25.0 bits (53), Expect = 7.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 2   EYTHRYSPNSELEALSHNPTHGSFAPL---TSQTSVMTNCANQ 41
           +Y H   PN     L  +P+ G+FAPL   TS +    N  NQ
Sbjct: 596 QYPHGNGPNG----LGTSPSAGNFAPLPLGTSPSQFTPNTNNQ 634


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.332    0.139    0.486 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,616,525
Number of Sequences: 26719
Number of extensions: 42618
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 3
length of query: 76
length of database: 11,318,596
effective HSP length: 52
effective length of query: 24
effective length of database: 9,929,208
effective search space: 238300992
effective search space used: 238300992
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 52 (24.6 bits)