BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0134.24
(366 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g45550 putative protein 239 2e-63
At2g31520 putative non-LTR retroelement reverse transcriptase 239 2e-63
At2g25550 putative non-LTR retroelement reverse transcriptase 239 2e-63
At1g47910 reverse transcriptase, putative 230 1e-60
At2g05200 putative non-LTR retroelement reverse transcriptase 229 2e-60
At4g10830 putative protein 228 4e-60
At2g17910 putative non-LTR retroelement reverse transcriptase 219 2e-57
At2g11240 pseudogene 218 4e-57
At1g24640 hypothetical protein 218 5e-57
At2g01840 putative non-LTR retroelement reverse transcriptase 216 2e-56
At4g09710 RNA-directed DNA polymerase -like protein 214 5e-56
At2g45230 putative non-LTR retroelement reverse transcriptase 210 1e-54
At2g16680 putative non-LTR retroelement reverse transcriptase 209 1e-54
At3g32110 non-LTR reverse transcriptase, putative 202 2e-52
At2g41580 putative non-LTR retroelement reverse transcriptase 201 5e-52
At2g31080 putative non-LTR retroelement reverse transcriptase 196 2e-50
At2g17610 putative non-LTR retroelement reverse transcriptase 190 9e-49
At1g25430 hypothetical protein 186 2e-47
At2g05980 putative non-LTR retroelement reverse transcriptase 185 3e-47
At4g15590 reverse transcriptase like protein 181 7e-46
>At3g45550 putative protein
Length = 851
Score = 239 bits (610), Expect = 2e-63
Identities = 135/370 (36%), Positives = 207/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K + R+ L ++ +SQ+AFI GR + D+V++A+E++ + R K M K D
Sbjct: 140 KCMVNRLKAHLNSIVSDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVS 199
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL MR GFC+KWIGWI A ++S SVL+NGSP RG+RQGDP
Sbjct: 200 KAYDRVEWDFLETTMRLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDP 259
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ + LS L++ +G ++G I+ LQF DD+LF +A+ +N
Sbjct: 260 LSPYLFILCGDILSHLIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQA 319
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC-FARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N K+ S G+TQ +LN YLG+
Sbjct: 320 LKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFG 379
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+++ M+ ++ ++K+R SW K LS GK L+KSV ++P++ +S FK P+GI E
Sbjct: 380 RKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEI 439
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 440 ESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPN 499
Query: 357 RLWGEVLSSR 366
L+ V+ +R
Sbjct: 500 SLFARVMKAR 509
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 239 bits (610), Expect = 2e-63
Identities = 135/370 (36%), Positives = 206/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K L R+ L ++ +SQ+AFI GR + D+V++A+EV+ + R K M K D
Sbjct: 675 KCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVS 734
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL MR GFC KWIGWI A ++S SVL+NGSP RG+RQGDP
Sbjct: 735 KAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDP 794
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ + LS L+ +G ++G I+ LQF DD+LF +A+ +N
Sbjct: 795 LSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQA 854
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC-FARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N K+ S G+TQ ++L YLG+
Sbjct: 855 LKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFG 914
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+++ M+E ++ ++KKR +W + LS GK ++KSV ++P++ +S FK P+GI E
Sbjct: 915 RKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEI 974
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 975 ESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPN 1034
Query: 357 RLWGEVLSSR 366
L+ V+ +R
Sbjct: 1035 SLFARVMKAR 1044
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 239 bits (610), Expect = 2e-63
Identities = 135/370 (36%), Positives = 206/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K L R+ L ++ +SQ+AFI GR + D+V++A+EV+ + R K M K D
Sbjct: 901 KCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVS 960
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL MR GFC KWIGWI A ++S SVL+NGSP RG+RQGDP
Sbjct: 961 KAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDP 1020
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ + LS L+ +G ++G I+ LQF DD+LF +A+ +N
Sbjct: 1021 LSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQA 1080
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC-FARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N K+ S G+TQ ++L YLG+
Sbjct: 1081 LKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFG 1140
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+++ M+E ++ ++KKR +W + LS GK ++KSV ++P++ +S FK P+GI E
Sbjct: 1141 RKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEI 1200
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 1201 ESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPN 1260
Query: 357 RLWGEVLSSR 366
L+ V+ +R
Sbjct: 1261 SLFARVMKAR 1270
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 230 bits (586), Expect = 1e-60
Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGK---ECMIFKVDYK 57
K+L +R+ VL +I E+QSAF+ GR + D++L+A E+ R + M K D
Sbjct: 303 KILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMS 362
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +F+ ++R++GFCEKWI WI CI + VL+NG P + +RGLRQGDP
Sbjct: 363 KAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDP 422
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ E L +R+A R NL G KV +S L F DD+LF +A+ + +
Sbjct: 423 LSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGI 482
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
+ +L+ +E +SG ++NFSK+ G + + +L + +YLG+
Sbjct: 483 ILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLG 542
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+ ++ + +++ R+ W K LS GGK +IKSV +++P + +S F+ P+ I +
Sbjct: 543 GSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKL 602
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
F W + + W W +C K + GLG ++++ FN AL++K WR + D
Sbjct: 603 TSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPD 662
Query: 357 RLWGEVLSSR 366
L+ +V R
Sbjct: 663 SLFAKVFKGR 672
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 229 bits (584), Expect = 2e-60
Identities = 129/370 (34%), Positives = 206/370 (54%), Gaps = 10/370 (2%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KEC-MIFKVDYK 57
K+++KRM +L ++I E+QSAF+ GR + D+VL+ +EV+ R K C M K D
Sbjct: 414 KIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMS 473
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V DFL +++R GF WI W+ C+ S + S L+NG+P + V RGLRQGDP
Sbjct: 474 KAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDP 533
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P LF++ E LSGL +A+RL G +V ++G ++ L F DDT+F ++ ++
Sbjct: 534 LSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNK 593
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQC----FARMLNCRVMKEPFTYLGIFV 233
L +L + SG +NF K+ ++ T + R+L R YLG+
Sbjct: 594 LSEILSRYGKASGQSINFHKS---SVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPE 650
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
R+R ++ ++ K++++ SW + LS GK ++K+VL+S+PL+ +S FK P +
Sbjct: 651 HFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALC 710
Query: 294 KECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLG 353
++ + + F W + K W WS + K GLG +D+ER N +L++K WR L
Sbjct: 711 RKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLN 770
Query: 354 EEDRLWGEVL 363
+ L +L
Sbjct: 771 SPESLLSRIL 780
>At4g10830 putative protein
Length = 1294
Score = 228 bits (581), Expect = 4e-60
Identities = 131/370 (35%), Positives = 205/370 (55%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K L +R+ L ++ +SQ+AFI GR + D+V++A+E++ + R + M K D
Sbjct: 881 KCLVERLKGHLDAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVS 940
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +FL MR GF E WI WI ++S SVLVNG P QRG+RQGDP
Sbjct: 941 KAYDRVEWNFLETTMRLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDP 1000
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ A+ L+ L++ +G ++G ++ LQF DD+LF +++ +N
Sbjct: 1001 LSPYLFILCADILNHLIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQA 1060
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQ-CFARMLNCRVMKEPFTYLGIFVGAN 236
LK + +E SG K+N SK+ S GTTQ +L + YLG+
Sbjct: 1061 LKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFG 1120
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
++R M+ ++ ++KKR SW K LS GK ++KSV S+P++ +S FK P I E
Sbjct: 1121 RKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEI 1180
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + M+F W + +I W W + K+E GLG +DL +FN AL++K WR + +
Sbjct: 1181 EALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPN 1240
Query: 357 RLWGEVLSSR 366
L+ ++ +R
Sbjct: 1241 SLFARIMKAR 1250
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 219 bits (558), Expect = 2e-57
Identities = 131/373 (35%), Positives = 202/373 (54%), Gaps = 10/373 (2%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K+L++R+ + L ++ +QSAF+ R + D++LVA+E++ R R KE M FK D
Sbjct: 497 KILTQRLKKHLPAIVSTTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMS 556
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V FL MM LGF KWI WI C+ S + SVL+NG P + RG+RQGDP
Sbjct: 557 KAYDRVEWPFLETMMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDP 616
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P LF++ E L ++ +A + G + + ++ L F DDTL + +A+ Q
Sbjct: 617 LSPALFVLCTEALIHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEE 676
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCR--VMKEPFT--YLGIFV 233
L L + LSG +N +K+ I+ G+ + R + E T YLG+
Sbjct: 677 LMQCLSQYGQLSGQMINLNKS---AITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPE 733
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
+ +R ++ + K++ RL W K LS GGK L+KS+ ++P++ +S FK P+ +
Sbjct: 734 CLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLC 793
Query: 294 KECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLG 353
++ + MDF W KI W W + K++ G G KDL+ FN+AL++K WR L
Sbjct: 794 QKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQ 853
Query: 354 EEDRLWGEVLSSR 366
E+ L+ V SR
Sbjct: 854 EKGSLFSRVFQSR 866
>At2g11240 pseudogene
Length = 1044
Score = 218 bits (555), Expect = 4e-57
Identities = 129/360 (35%), Positives = 199/360 (54%), Gaps = 16/360 (4%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KEC-MIFKVDYK 57
KLLS+R+ +L E+I E+QSAF+ R D+VL+ +E + + G K C M K +
Sbjct: 345 KLLSRRLQPILQEIISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMS 404
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD + DF+ +M+ +GF + WI WI CI + + S L+NGS +RGLRQGDP
Sbjct: 405 KAYDRIEWDFIKLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDP 464
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+PFLF++ +E LSGL R+A+ G +V ++ L F DDT+F + ++
Sbjct: 465 LSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKT 524
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCF----ARMLNCRVMKEPFTYLGIFV 233
+L+ +E SG +N SK+ I+ T ++L +++ YLG+
Sbjct: 525 FLCILKKYEEASGQMINKSKS---AITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPK 581
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
++R ++ +V ++++R SW + LS GK ++KSVL+S+P + +S FK +
Sbjct: 582 MFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKL---LV 638
Query: 294 KECKRIQ---MDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWR 350
CKRIQ F W K+CW WS + K K+E GLG KD+ FN AL++K WR
Sbjct: 639 SLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWR 698
>At1g24640 hypothetical protein
Length = 1270
Score = 218 bits (554), Expect = 5e-57
Identities = 129/370 (34%), Positives = 201/370 (53%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEAR---RQGKECMIFKVDYK 57
K+++KR+ L E++ ++QSAF+ R + D++LVA+E+V + R E M K D
Sbjct: 482 KIMAKRLQPWLPEIVSDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMS 541
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V +L ++ LGF KW+ WI C+ S T SVL+N P ++QRGLRQGDP
Sbjct: 542 KAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDP 601
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+PFLF++ E L+ L+ +A+ +G + +G + L F DD+LF+ +AS + LV
Sbjct: 602 LSPFLFVLCTEGLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLV 661
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
L+ +L+ + +G +N +K+ G + E L TYLG+ +
Sbjct: 662 LQKILKVYGNATGQTINLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFS 721
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+ M L ++K++L W + LS GGK L+KSV ++P+F +S FK P +
Sbjct: 722 GSKVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENL 781
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ F W + KI W W +C K+ GLG +D++ FN+AL++K WR L D
Sbjct: 782 ESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPD 841
Query: 357 RLWGEVLSSR 366
L +L SR
Sbjct: 842 CLLSRLLKSR 851
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 216 bits (550), Expect = 2e-56
Identities = 129/357 (36%), Positives = 199/357 (55%), Gaps = 24/357 (6%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKEC----MIFKVDY 56
K+L KR+ + LG+VI +SQ+AF+ G+++ D+VLVA+E++ + + +EC + K D
Sbjct: 881 KILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSR-RECQSGYVAVKTDI 939
Query: 57 KKAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGD 116
KAYD V +FL +M +LGF +W+ WI C+ S + VL+NGSP + RG+RQGD
Sbjct: 940 SKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGD 999
Query: 117 PLAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVL 176
PL+P+LFL AE LS ++R+A G K+ D + IS L F DD+LF AS QN+
Sbjct: 1000 PLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIE 1059
Query: 177 VLKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGA 235
L + + +E SG K+N++K+ G + Q R+L ++ YLG+
Sbjct: 1060 QLALIFKKYEEASGQKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQL 1119
Query: 236 NPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKE 295
R+ ++E +V K+K+R + W LS GK +IK++ ++P++ ++ F P I E
Sbjct: 1120 GRRKVELFEYIVTKVKERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNE 1179
Query: 296 CKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNL 352
+ F WG+E E LG KDL +FNRAL++K WR L
Sbjct: 1180 INSLITAFWWGKE------------------NEGDLGFKDLHQFNRALLAKQAWRIL 1218
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 214 bits (546), Expect = 5e-56
Identities = 129/370 (34%), Positives = 201/370 (53%), Gaps = 17/370 (4%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KEC-MIFKVDYK 57
K+L++R+ L E+I QSAF+ GR + D+VL+ +E++ R G K C M K D
Sbjct: 460 KILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMS 519
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD ++ +FL ++ RLGF +KWI W+ C+ + + S L+NGSP V RGLRQGDP
Sbjct: 520 KAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDP 579
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ E LSGL R+A+ + G +V +++ L F DDT+F + +
Sbjct: 580 LSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGA 639
Query: 178 LKGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFAR--MLNCRVMKEP--FTYLGIFV 233
L +L+ +EL SG +N +K+ I+ T Q R L+ R+ E YLG+
Sbjct: 640 LSNILKKYELASGQSINLAKS---AITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPE 696
Query: 234 GANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIA 293
R+R ++ +V ++++R SW + LS GK L+K+VLSS+P + + FK P +
Sbjct: 697 HFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLC 756
Query: 294 KECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLG 353
K+ + + F W + K+ W W + E GLG +++E +K WR L
Sbjct: 757 KQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILK 809
Query: 354 EEDRLWGEVL 363
E L VL
Sbjct: 810 EPHSLLSRVL 819
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 210 bits (534), Expect = 1e-54
Identities = 121/370 (32%), Positives = 197/370 (52%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGK---ECMIFKVDYK 57
KL++ R+ ++L +I E+Q+AF+ GR + D++L+A+E++ K E + K D
Sbjct: 519 KLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDIS 578
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V FL MR LGF + WI I C++S VL+NG+P E + RGLRQGDP
Sbjct: 579 KAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDP 638
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+P+LF++ E L +++ A + N G KV IS L F DD++F + + + +
Sbjct: 639 LSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQ 698
Query: 178 LKGMLRYFELLSGLKVNFSKNR-FPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
+ ++ + L SG +VN+ K+ + G + E R L YLG+
Sbjct: 699 IIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQ 758
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
+ + L ++ K++ W+ LS GGK L+K+V ++P + +S FK P+ I ++
Sbjct: 759 GSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQI 818
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ + +F W + + W W + + K GLG K++E FN AL+ K WR + E+D
Sbjct: 819 ESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKD 878
Query: 357 RLWGEVLSSR 366
L +V SR
Sbjct: 879 SLMAKVFKSR 888
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 209 bits (533), Expect = 1e-54
Identities = 117/370 (31%), Positives = 192/370 (51%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQ---GKECMIFKVDYK 57
K+LS ++ + L ++ SQSAF R + D++L+A+E+V R KE M+FK D
Sbjct: 471 KILSFKLKKHLPSIVSPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMS 530
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V FL ++ LGF +KWI WI C+ S T SVL+NG +RG+RQGDP
Sbjct: 531 KAYDRVEWSFLQEILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDP 590
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
++PFLF++ E L +++QA G + G ++ L F+DDT + A+ +
Sbjct: 591 ISPFLFVLCTEALIHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQ 650
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
+ L + +SG +N K+ G+ + E T + + YLG+ +
Sbjct: 651 MMLCLSQYGHISGQLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLS 710
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
++ ++ + K++ L W K LS GGK L+KS+ ++P++ ++ F+ P+G+ +
Sbjct: 711 GSKQDLFGYIKEKLQSHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKL 770
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ MDF W + KI W + K G G KDL+ FN+AL++K WR +
Sbjct: 771 TSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSK 830
Query: 357 RLWGEVLSSR 366
+ ++ SR
Sbjct: 831 SIVSQIFKSR 840
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 202 bits (514), Expect = 2e-52
Identities = 117/372 (31%), Positives = 196/372 (52%), Gaps = 9/372 (2%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KECMIFKVDYKK 58
K++ R+ V+ ++I +Q++FI GR D+++V EVV RR+ K M+ K+D +K
Sbjct: 1059 KVMVGRLKGVINKLIGPAQTSFIPGRLSTDNIVVVQEVVHSMRRKKGVKGWMLLKLDLEK 1118
Query: 59 AYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPL 118
AYD +R D L ++ G W+ WI C++ ++ +L NG T+ RGLRQGDPL
Sbjct: 1119 AYDRIRWDLLEDTLKAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPL 1178
Query: 119 APFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVL 178
+P+LF++ E L L+ + +K K+ G +S + F DD + EAS + VL
Sbjct: 1179 SPYLFVLCIERLCHLIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVL 1238
Query: 179 KGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLN----CRVMKEPFTYLGIFVG 234
+G+L F SG KV+ K++ I + + + ++ + K+ YLG+ +
Sbjct: 1239 RGVLEKFCGASGQKVSLEKSK---IYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPIL 1295
Query: 235 ANPRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAK 294
+ + ++ + RL WK +MLSF G++ L K+VL+SI + +S K P+
Sbjct: 1296 QKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLD 1355
Query: 295 ECKRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGE 354
++ FLWG + K W+ VC + E GLG++ N+AL++K WR L +
Sbjct: 1356 GLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLND 1415
Query: 355 EDRLWGEVLSSR 366
LW +V+ S+
Sbjct: 1416 GSSLWAQVVRSK 1427
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 201 bits (511), Expect = 5e-52
Identities = 121/370 (32%), Positives = 189/370 (50%), Gaps = 4/370 (1%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQ---GKECMIFKVDYK 57
K+LS R+ + L ++ +QSAF+ R + D++++A+E+V R K+ M+FK D
Sbjct: 248 KILSARLKKYLPVIVSPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMS 307
Query: 58 KAYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDP 117
KAYD V FL ++ LGF WI W+ AC+ S + SVL+NG P RGLRQGDP
Sbjct: 308 KAYDRVEWPFLKGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDP 367
Query: 118 LAPFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLV 177
L+PFLF++ E L ++ QA ++ G + G ++ L F DDTL I +AS
Sbjct: 368 LSPFLFVLCTEALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAE 427
Query: 178 LKGMLRYFELLSGLKVNFSKNRFP-GISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGAN 236
+ L + +SG +N K+ G + E T Q + YLG+
Sbjct: 428 IMHCLSQYGHISGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQ 487
Query: 237 PRRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKEC 296
++ ++ + K++ RL W K LS GGK L+KS+ + P++ ++ F+ + + +
Sbjct: 488 GSKQVLFGFIKEKLQSRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKL 547
Query: 297 KRIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEED 356
+ MDF W KI W + K G G KDL+ FN+AL++K R + D
Sbjct: 548 TSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSD 607
Query: 357 RLWGEVLSSR 366
L ++L SR
Sbjct: 608 SLLSQILKSR 617
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 196 bits (497), Expect = 2e-50
Identities = 118/369 (31%), Positives = 190/369 (50%), Gaps = 3/369 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KECMIFKVDYKK 58
K++ R+ V+ ++I +Q++FI GR +D++++ E V RR+ K M+ K+D +K
Sbjct: 383 KMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLDLEK 442
Query: 59 AYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPL 118
AYD VR DFL + G E W I A + ++SVL NG T+ V RGLRQGDPL
Sbjct: 443 AYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPL 502
Query: 119 APFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVL 178
+P+LF++ E L L+ + +K V G ++S + F DD + EAS + ++
Sbjct: 503 SPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRII 562
Query: 179 KGMLRYFELLSGLKVNFSKNR-FPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANP 237
+ +L F SG KV+ K++ F ++ Q + KE YLG+ +
Sbjct: 563 RRVLERFCEASGQKVSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKR 622
Query: 238 RRRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECK 297
+ + ++ ++ RL WK + LS G++ L K+VLSSIP+ +S P
Sbjct: 623 MNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLD 682
Query: 298 RIQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDR 357
R FLWG + K W +CK K E G+G++ N+AL++K WR L +++
Sbjct: 683 RYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKES 742
Query: 358 LWGEVLSSR 366
LW V+ +
Sbjct: 743 LWARVVRKK 751
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 190 bits (483), Expect = 9e-49
Identities = 109/345 (31%), Positives = 188/345 (53%), Gaps = 13/345 (3%)
Query: 30 DSVLVANEVVDE--ARRQGKECMIFKVDYKKAYDSVRSDFLYYMMRRLGFCEKWIGWIKA 87
D++L+A+E++ ++ + + K+D KA+D + F+ +M+++GF EKW WI
Sbjct: 4 DNILIAHELIHSLHTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMT 63
Query: 88 CIQSATVSVLVNGSPTEESVMQRGLRQGDPLAPFLFLVVAEWLSGLMRQARRLNLFKGYK 147
CI + T S+L+NG P + +RG+RQGDP++P+L+L+ E LS L++ + + G+K
Sbjct: 64 CITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFK 123
Query: 148 VGMDGMEISLLQFLDDTLFIGEASTQNVLVLKGMLRYFELLSGLKVNFSKNRFPGISLGE 207
+G IS L F D+L +A+ + + L +L+ +E SG VNF K+ I G+
Sbjct: 124 ASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKS---AILFGK 180
Query: 208 G----TTQCFARMLNCRVMKEPFTYLGI--FVGANPRRRSMWEPLVCKMKKRLQSWKQKM 261
G T++ +++L + YLG+ FVG N + + + + M +++ +W K+
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRN--KTNAFSFIAQTMDQKMDNWYNKL 238
Query: 262 LSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRIQMDFLWGREVGAGKICWAKWST 321
LS GK LIKS++++IP + +S F P + + F W KI W WS
Sbjct: 239 LSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSK 298
Query: 322 VCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLWGEVLSSR 366
+ K+ GL ++DL+ FN AL++K WR L + L V ++
Sbjct: 299 LNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAK 343
>At1g25430 hypothetical protein
Length = 1213
Score = 186 bits (472), Expect = 2e-47
Identities = 120/362 (33%), Positives = 183/362 (50%), Gaps = 3/362 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQGKECM-IFKVDYKKA 59
+LL+ R+ R+L VI +QSAF+ GR + ++VL+A ++V + KVD KKA
Sbjct: 538 RLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKA 597
Query: 60 YDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLA 119
+DSVR +F+ +R L EK+I WI CI + T +V +NG +GLRQGDPL+
Sbjct: 598 FDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLS 657
Query: 120 PFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLK 179
P+LF++ E S L+ L Y + IS L F DD + + + ++ +
Sbjct: 658 PYLFVLAMEAFSNLLHSRYESGLIH-YHPKASNLSISHLMFADDVMIFFDGGSFSLHGIC 716
Query: 180 GMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRR 239
L F SGLKVN K+ L + + A + P YLG+ + R
Sbjct: 717 ETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANAAY-GFPIGTLPIRYLGLPLMNRKLR 775
Query: 240 RSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRI 299
+ +EPL+ K+ R +SW K LSF G++ LI SV+ F++S F P+G K + +
Sbjct: 776 IAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESL 835
Query: 300 QMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLW 359
FLW + K W+ +C K E GLG++ L +N+ L + WR +D LW
Sbjct: 836 CSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLW 895
Query: 360 GE 361
+
Sbjct: 896 AD 897
>At2g05980 putative non-LTR retroelement reverse transcriptase
Length = 1352
Score = 185 bits (470), Expect = 3e-47
Identities = 115/360 (31%), Positives = 190/360 (51%), Gaps = 2/360 (0%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG-KECMIFKVDYKKA 59
KL++ R+ +L I +QSAFI R M++++L+A+E+V + ++ K+D KA
Sbjct: 691 KLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRSALKIDISKA 750
Query: 60 YDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPLA 119
+D V+ FL +++ + E +I WI+ CI +A+ SV VNG + +RGLRQG L+
Sbjct: 751 FDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLS 810
Query: 120 PFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVLK 179
P+L+++ LS ++ +A + Y M ++ L F DD + + +++++
Sbjct: 811 PYLYVICMNVLSCMLDKAA-VEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTL 869
Query: 180 GMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPRR 239
+ F +S LK++ K+ + + + P YLG+ +
Sbjct: 870 AIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMT 929
Query: 240 RSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKRI 299
+S + PLV K++ R+ SW + LSF G++ LIKSVLSSI F+LS F+ P+ +E +++
Sbjct: 930 QSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKM 989
Query: 300 QMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRLW 359
FLW K WS VCK+KEE GLG+K L+ N + K WR L D LW
Sbjct: 990 FSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLW 1049
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 181 bits (458), Expect = 7e-46
Identities = 114/365 (31%), Positives = 184/365 (50%), Gaps = 18/365 (4%)
Query: 1 KLLSKRMGRVLGEVIDESQSAFIGGRHMLDSVLVANEVVDEARRQG--KECMIFKVDYKK 58
K++ R+ V+ ++I +Q++FI GR D+++V E V RR+ K M+ K+D +K
Sbjct: 335 KMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLDLEK 394
Query: 59 AYDSVRSDFLYYMMRRLGFCEKWIGWIKACIQSATVSVLVNGSPTEESVMQRGLRQGDPL 118
AYD +R DFL + G E WI I C+ +S+L NG T+ +RGLRQGDP+
Sbjct: 395 AYDRIRWDFLAETLEAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPI 454
Query: 119 APFLFLVVAEWLSGLMRQARRLNLFKGYKVGMDGMEISLLQFLDDTLFIGEASTQNVLVL 178
+P+LF++ E L + A +K + G ++S + F DD + EAS + L
Sbjct: 455 SPYLFVLCIERLCHQIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEASVAQKVSL 514
Query: 179 KGMLRYFELLSGLKVNFSKNRFPGISLGEGTTQCFARMLNCRVMKEPFTYLGIFVGANPR 238
+ K+ FS N + EG + + R + + YLG+ V
Sbjct: 515 EKS----------KIFFSNNVSRDL---EGLITAETGIGSTRELGK---YLGMPVLQKRI 558
Query: 239 RRSMWEPLVCKMKKRLQSWKQKMLSFGGKVCLIKSVLSSIPLFYLSFFKFPRGIAKECKR 298
+ + ++ ++ RL WK + LS G++ L K+VL SIP+ +S P + ++ +
Sbjct: 559 NKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDK 618
Query: 299 IQMDFLWGREVGAGKICWAKWSTVCKIKEEEGLGVKDLERFNRALMSKWRWRNLGEEDRL 358
+ +FLWG V K W VC+ K GLG++ + NRAL++K WR L ++ L
Sbjct: 619 VSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSL 678
Query: 359 WGEVL 363
W VL
Sbjct: 679 WARVL 683
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,390,304
Number of Sequences: 26719
Number of extensions: 355160
Number of successful extensions: 1176
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 87
length of query: 366
length of database: 11,318,596
effective HSP length: 101
effective length of query: 265
effective length of database: 8,619,977
effective search space: 2284293905
effective search space used: 2284293905
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0134.24