BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0134.10
         (1564 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g60170 putative protein                                            226  6e-59
At1g58140 hypothetical protein                                        210  5e-54
At1g48710 hypothetical protein                                        210  5e-54
At3g61330 copia-type polyprotein                                      209  1e-53
At2g20460 putative retroelement pol polyprotein                       193  6e-49
At2g16000 putative retroelement pol polyprotein                       192  1e-48
At1g70010 hypothetical protein                                        189  8e-48
At2g15650 putative retroelement pol polyprotein                       186  1e-46
At4g17450 retrotransposon like protein                                182  1e-45
At4g10990 putative retrotransposon polyprotein                        177  4e-44
At4g23160 putative protein                                            176  1e-43
At2g15870 putative retroelement pol polyprotein                       174  4e-43
At2g13940 putative retroelement pol polyprotein                       170  7e-42
At1g47650 hypothetical protein                                        170  7e-42
At4g19780 putative LTR retrotransposon (fragment)                     168  3e-41
At1g26990 polyprotein, putative                                       166  1e-40
At3g25450 hypothetical protein                                        164  5e-40
At2g16670 putative retroelement pol polyprotein                       164  5e-40
At1g31210 putative reverse transcriptase                              164  5e-40
At1g59265 polyprotein, putative                                       162  1e-39

>At3g60170 putative protein
          Length = 1339

 Score =  226 bits (577), Expect = 6e-59
 Identities = 116/268 (43%), Positives = 171/268 (63%), Gaps = 3/268 (1%)

Query: 1232 SRYNSLLKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQ 1291
            S +    K    +ILIV +YVDD+IF  +++++C EF + M  EFEMS +G++K+FLGI+
Sbjct: 1001 SEHTLFTKTRVGNILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIE 1060

Query: 1292 VDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIG 1351
            V Q+  G +I Q +Y +E+L +F M ES   K P+ P   L K++   KV + ++  ++G
Sbjct: 1061 VKQSDGGIFICQRRYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVG 1120

Query: 1352 TLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY--KKT*EYK 1409
            +L+YLT +RPD+++ V L +RF S+PR +H  A KRILRYLKGT  LG+ Y  +K    K
Sbjct: 1121 SLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAAKRILRYLKGTVELGIFYRRRKNRSLK 1180

Query: 1410 LSGYCDADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQM 1469
            L  + D+DYAGD  +R+STS     + S  + WASK Q  +ALST EAEYI  A C+ Q 
Sbjct: 1181 LMAFTDSDYAGDLNDRRSTSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAAFCACQC 1240

Query: 1470 LWMKHQLEDYQILESNIS-IYCDNTAAI 1496
            +W++  LE     E + + I CDN++ I
Sbjct: 1241 VWLRKVLEKLGAEEKSATVINCDNSSTI 1268



 Score = 89.4 bits (220), Expect = 2e-17
 Identities = 63/274 (22%), Positives = 130/274 (46%), Gaps = 13/274 (4%)

Query: 11  DLWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDRE 70
           +LW ++ +G    V              ++ KL  +  K +  L  AI  E  E I D+ 
Sbjct: 34  ELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKL--KDLKVKNFLFQAIDREILETILDKS 91

Query: 71  YAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            +K I+ES+K  ++G+ KVK ++  +L +++E   M+  E I+    R   +V  ++   
Sbjct: 92  TSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEGEKIDTFLGRTLTVVNKMKTNG 151

Query: 131 KSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSDE 190
           +       V +++RSL   +  +V SIE + D+  +S++EL   L  HE + +  +  ++
Sbjct: 152 EVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELHGSLLVHEQRLNGHVQEEQ 211

Query: 191 DELTLISKRLNRIWKHKQSKYRGSG---KAKGKSESSGQKKSSIKEVTCFECKESGHYKS 247
                    L    + + S+ RG G    ++G+    G+  ++   V C++C   GH++ 
Sbjct: 212 --------ALKVTHEERPSQGRGRGVFRGSRGRGRGRGRSGTNRAIVECYKCHNLGHFQY 263

Query: 248 DCPKLKKDKRPKKHFKTKKSLMVTFDESESEDVD 281
           +CP+ +K+    +  + ++ L++ + E    + D
Sbjct: 264 ECPEWEKNANYAELEEEEELLLMAYVEQNQANRD 297


>At1g58140 hypothetical protein
          Length = 1320

 Score =  210 bits (535), Expect = 5e-54
 Identities = 110/260 (42%), Positives = 156/260 (59%), Gaps = 1/260 (0%)

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            +K  + DILI  +YVDD+IF   N S+ +EF + M  EFEM+ +G + Y+LGI+V Q   
Sbjct: 986  IKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDN 1045

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
            G +I Q  Y KE+LKKF M +S    TPM     L K++    V    +  ++G+L YLT
Sbjct: 1046 GIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLT 1105

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
             +RPDIL++V + +R+   P  TH  A KRILRY+KGT N GL Y  T +YKL GY D+D
Sbjct: 1106 CTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSD 1165

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            + GD  +RKSTS    ++G    +W SK Q  + LST EAEY+    C    +W+++ L+
Sbjct: 1166 WGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLK 1225

Query: 1478 DYQI-LESNISIYCDNTAAI 1496
            +  +  E    I+ DN +AI
Sbjct: 1226 ELSLPQEEPTKIFVDNKSAI 1245



 Score = 97.8 bits (242), Expect = 4e-20
 Identities = 71/302 (23%), Positives = 139/302 (45%), Gaps = 36/302 (11%)

Query: 11  DLWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDRE 70
           D+W+I+  G+  P +E      + +   D +K   +  KA  ++   +  + +EK+ +  
Sbjct: 33  DVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK---RDKKALCLIYQGLDEDTFEKVVEAT 89

Query: 71  YAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            AK  +E L+ S++G  +VK+ +  +L  ++E+  M+  E + + FSR   +   ++   
Sbjct: 90  SAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNG 149

Query: 131 KSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSDE 190
           +       + +V+RSL   +  +VT IE T+D+E M++E+L+  L+ +E K  +  D  E
Sbjct: 150 EKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIVE 209

Query: 191 DELTL-ISKRLN-----------------------RIWK--HKQSKYRGSGKAKGKSESS 224
             L + I+K  N                       R W+     +  RG   ++G+ +  
Sbjct: 210 QVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRGKGH 269

Query: 225 GQKKSSIKEVTCFECKESGHYKSDC--PKLKKDKRPKKHFKTK-----KSLMVTFDESES 277
            + +     V C+ C + GHY S+C  P  KK +    + + K       LM ++ + E 
Sbjct: 270 PKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQ 329

Query: 278 ED 279
           E+
Sbjct: 330 EE 331


>At1g48710 hypothetical protein
          Length = 1352

 Score =  210 bits (535), Expect = 5e-54
 Identities = 110/260 (42%), Positives = 156/260 (59%), Gaps = 1/260 (0%)

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            +K  + DILI  +YVDD+IF   N S+ +EF + M  EFEM+ +G + Y+LGI+V Q   
Sbjct: 1018 IKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDN 1077

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
            G +I Q  Y KE+LKKF M +S    TPM     L K++    V    +  ++G+L YLT
Sbjct: 1078 GIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLT 1137

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
             +RPDIL++V + +R+   P  TH  A KRILRY+KGT N GL Y  T +YKL GY D+D
Sbjct: 1138 CTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSD 1197

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            + GD  +RKSTS    ++G    +W SK Q  + LST EAEY+    C    +W+++ L+
Sbjct: 1198 WGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLK 1257

Query: 1478 DYQI-LESNISIYCDNTAAI 1496
            +  +  E    I+ DN +AI
Sbjct: 1258 ELSLPQEEPTKIFVDNKSAI 1277



 Score = 97.8 bits (242), Expect = 4e-20
 Identities = 71/302 (23%), Positives = 139/302 (45%), Gaps = 36/302 (11%)

Query: 11  DLWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDRE 70
           D+W+I+  G+  P +E      + +   D +K   +  KA  ++   +  + +EK+ +  
Sbjct: 33  DVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK---RDKKALCLIYQGLDEDTFEKVVEAT 89

Query: 71  YAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            AK  +E L+ S++G  +VK+ +  +L  ++E+  M+  E + + FSR   +   ++   
Sbjct: 90  SAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNG 149

Query: 131 KSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSDE 190
           +       + +V+RSL   +  +VT IE T+D+E M++E+L+  L+ +E K  +  D  E
Sbjct: 150 EKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIIE 209

Query: 191 DELTL-ISKRLN-----------------------RIWK--HKQSKYRGSGKAKGKSESS 224
             L + I+K  N                       R W+     +  RG   ++G+ +  
Sbjct: 210 QVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRGKGH 269

Query: 225 GQKKSSIKEVTCFECKESGHYKSDC--PKLKKDKRPKKHFKTK-----KSLMVTFDESES 277
            + +     V C+ C + GHY S+C  P  KK +    + + K       LM ++ + E 
Sbjct: 270 PKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQEEDMLLMASYKKDEQ 329

Query: 278 ED 279
           E+
Sbjct: 330 EE 331


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  209 bits (531), Expect = 1e-53
 Identities = 109/260 (41%), Positives = 156/260 (59%), Gaps = 1/260 (0%)

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            +K  + DILI  +YVDD+IF   N S+ +EF + M  EFEM+ +G + Y+LGI+V Q   
Sbjct: 1018 IKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDN 1077

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
            G +I Q  Y KE+LKKF + +S    TPM     L K++    V    +  ++G+L YLT
Sbjct: 1078 GIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLT 1137

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
             +RPDIL++V + +R+   P  TH  A KRILRY+KGT N GL Y  T +YKL GY D+D
Sbjct: 1138 CTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSD 1197

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            + GD  +RKSTS    ++G    +W SK Q  + LST EAEY+    C    +W+++ L+
Sbjct: 1198 WGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLK 1257

Query: 1478 DYQI-LESNISIYCDNTAAI 1496
            +  +  E    I+ DN +AI
Sbjct: 1258 ELSLPQEEPTKIFVDNKSAI 1277



 Score = 97.4 bits (241), Expect = 6e-20
 Identities = 72/303 (23%), Positives = 141/303 (45%), Gaps = 38/303 (12%)

Query: 11  DLWDIIVDGYERPVDEEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDRE 70
           D+W+I+  G+  P +E      + +   D +K   +  KA  ++   +  + +EK+ +  
Sbjct: 33  DVWEIVEKGFIEPENEGSLSQTQKDGLRDSRK---RDKKALCLIYQGLDEDTFEKVVEAT 89

Query: 71  YAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLN 130
            AK  +E L+ S++G  +VK+ +  +L  ++E+  M+  E + + FSR   +   ++   
Sbjct: 90  SAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDYFSRVLTVTNNLKRNG 149

Query: 131 KSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSDE 190
           +       + +V+RSL   +  +VT IE T+D+E M++E+L+  L+ +E K  +  D  E
Sbjct: 150 EKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSLQAYEEKKKKKEDIAE 209

Query: 191 DELTL-ISKRLN-----------------------RIWK--HKQSKYRGSGKAKGKSESS 224
             L + I+K  N                       R W+     +  RG   ++G+ +  
Sbjct: 210 QVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWRPHEDNTNQRGENSSRGRGKGH 269

Query: 225 GQKKSSIKEVTCFECKESGHYKSDC--PKLKKDKRPKKHFKTKK------SLMVTFDESE 276
            + +     V C+ C + GHY S+C  P  KK +  K H+  +K       LM ++ + E
Sbjct: 270 PKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEE-KAHYVEEKIQEEDMLLMASYKKDE 328

Query: 277 SED 279
            ++
Sbjct: 329 QKE 331


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  193 bits (491), Expect = 6e-49
 Identities = 98/257 (38%), Positives = 153/257 (59%)

Query: 1241 IQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTY 1300
            I ++ +++ +YVDDI+  S  +   +  +E ++A F++  +G LKYFLG++V +T EG  
Sbjct: 1134 IGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGIS 1193

Query: 1301 IHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASR 1360
            + Q KY  ELL   +ML+   +  PM P   L K D      +++Y  ++G L+YLT +R
Sbjct: 1194 LSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITR 1253

Query: 1361 PDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAG 1420
            PDI F+V+   +F S PR  HL AV ++L+Y+KGT   GL Y    +  L GY DAD+  
Sbjct: 1254 PDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGT 1313

Query: 1421 DRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQ 1480
                R+ST+    F+GS+L+SW SK Q T++ S+AEAEY   A+ S +M W+   L   +
Sbjct: 1314 CPDSRRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALR 1373

Query: 1481 ILESNISIYCDNTAAIH 1497
            +      +Y D+TAA++
Sbjct: 1374 VHSGVPILYSDSTAAVY 1390


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  192 bits (488), Expect = 1e-48
 Identities = 100/260 (38%), Positives = 153/260 (58%)

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            LK    + +IV +YVDDI+  S +++   + +E +   F++  +G+LKYFLG++V +T  
Sbjct: 1124 LKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTA 1183

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
            G  I Q KY  ELL+   ML       PM P   + K+D       + Y  ++G L+YLT
Sbjct: 1184 GISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIVGKLMYLT 1243

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
             +RPDI F+V+   +F S PR THLTA  R+L+Y+KGT   GL Y  + +  L G+ D+D
Sbjct: 1244 ITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSD 1303

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            +A  +  R+ST+    F+G +L+SW SK Q T++ S+AEAEY   A+ + +M+W+   L 
Sbjct: 1304 WASCQDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLV 1363

Query: 1478 DYQILESNISIYCDNTAAIH 1497
              Q       +Y D+TAAI+
Sbjct: 1364 SLQASPPVPILYSDSTAAIY 1383


>At1g70010 hypothetical protein
          Length = 1315

 Score =  189 bits (481), Expect = 8e-48
 Identities = 99/265 (37%), Positives = 153/265 (57%), Gaps = 1/265 (0%)

Query: 1234 YNSLLKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVD 1293
            +   LK      L V +Y+DDII  S N +        M++ F++  +GELKYFLG+++ 
Sbjct: 981  HTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIV 1040

Query: 1294 QTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTL 1353
            ++ +G +I Q KY  +LL +   L    +  PM P+ +   +     V    Y  +IG L
Sbjct: 1041 RSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRL 1100

Query: 1354 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGY 1413
            +YL  +RPDI F+V+  A+F   PR+ HL AV +IL+Y+KGT   GL Y  T E +L  Y
Sbjct: 1101 MYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQGLFYSATSELQLKVY 1160

Query: 1414 CDADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMK 1473
             +ADY   R  R+STS  C FLG +L+ W S+ Q  ++ S+AEAEY   ++ + +++W+ 
Sbjct: 1161 ANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEYRSLSVATDELVWLT 1220

Query: 1474 HQLEDYQI-LESNISIYCDNTAAIH 1497
            + L++ Q+ L     ++CDN AAIH
Sbjct: 1221 NFLKELQVPLSKPTLLFCDNEAAIH 1245


>At2g15650 putative retroelement pol polyprotein
          Length = 1347

 Score =  186 bits (471), Expect = 1e-46
 Identities = 99/256 (38%), Positives = 146/256 (56%), Gaps = 3/256 (1%)

Query: 1244 DILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQ 1303
            D+LIV +YVDD+I    N  L   F + M+ EFEM+ +G L YFLG++V+Q   G ++ Q
Sbjct: 1023 DVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQ 1082

Query: 1304 SKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGK--VCQKLYHGMIGTLLYLTASRP 1361
             KY  +L+ KF M ES    TP+ P    +  +   K       Y  ++G LLYL ASRP
Sbjct: 1083 EKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRIVGGLLYLCASRP 1142

Query: 1362 DILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGD 1421
            D++++    +R+ S P   H    KR+LRY+KGT+N G+++      +L GY D+D+ G 
Sbjct: 1143 DVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSDWGGS 1202

Query: 1422 RTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQI 1481
              ++KST+     LG  +  W S  Q T+A STAEAEYI     + Q +W++   ED+ +
Sbjct: 1203 LEDKKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFEDFGL 1262

Query: 1482 -LESNISIYCDNTAAI 1496
              +  I I CDN +AI
Sbjct: 1263 KFKEGIPILCDNKSAI 1278



 Score = 80.9 bits (198), Expect = 5e-15
 Identities = 62/266 (23%), Positives = 131/266 (48%), Gaps = 25/266 (9%)

Query: 12  LWDIIVDGYE-RPVD-EEGKKIPRSEMTADQKKLYSQHHKARAILLSAISYEEYEKITDR 69
           LW ++ +G    PV  EE  +  R++   ++    +    A  IL +A++ + + +I   
Sbjct: 33  LWSVVEEGVPVEPVQAEETPETARAKTLREEA--VTNDTMALQILQTAVTDQIFSRIAAA 90

Query: 70  EYAKGIFESLKMSHEGNKKVKESKALSLIQKYESFIMEPNESIEEMFSRFQLLVAGIRPL 129
             +K  ++ LK  ++G+ +V+  K  SL ++YE+  M  N++I+    +  +L   +   
Sbjct: 91  SSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYDNDNIKTFTDKLIVLEIQLTYH 150

Query: 130 NKSYTTKYHVIRVIRSLPESWMPLVTSIELTRDVERMSLEELISILKCHELKHSEMLDSD 189
            +  T    + +++ SLP  +  +V+ +E TRD++ +++ EL+ ILK  E + +   +S 
Sbjct: 151 GEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLDALTMSELLGILKAQEARVTAREEST 210

Query: 190 EDELTLI--------------SKRLNRIWK----HKQSKY-RGSGKAKGKSESSGQKKSS 230
           ++    +              + R+N+  K    HK SK+     + K K++  G+ K S
Sbjct: 211 KEGAFYVRSKGRESGFKQDNTNNRVNQDKKWCGFHKSSKHTEEECREKPKNDDHGKNKRS 270

Query: 231 IKEVTCFECKESGHYKSDCPKLKKDK 256
              + C++C + GHY ++C    K++
Sbjct: 271 --NIKCYKCGKIGHYANECRSKNKER 294


>At4g17450 retrotransposon like protein
          Length = 1433

 Score =  182 bits (462), Expect = 1e-45
 Identities = 95/265 (35%), Positives = 151/265 (56%), Gaps = 2/265 (0%)

Query: 1235 NSLLKNIQNDILI-VQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVD 1293
            ++L     N +L+ V +YVDDI+  S +     +F+  +++ F++  +G  KYFLGI++ 
Sbjct: 1097 HTLFIKYANGVLMGVLVYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIA 1156

Query: 1294 QTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTL 1353
            ++ +G  I Q KY  ELL     L S  +  P+ P+  L KED         Y  ++G L
Sbjct: 1157 RSEKGISICQRKYILELLSTTGFLGSKPSSIPLDPSVKLNKEDGVPLTDSTSYRKLVGKL 1216

Query: 1354 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGY 1413
            +YL  +RPDI ++V+   +F   P   HL+AV ++LRYLKGT   GL Y    ++ L GY
Sbjct: 1217 MYLQITRPDIAYAVNTLCQFSHAPTSVHLSAVHKVLRYLKGTVGQGLFYSADDKFDLRGY 1276

Query: 1414 CDADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMK 1473
             D+D+      R+  +  C F+G  LVSW SK Q T+++STAEAE+   +  + +M+W+ 
Sbjct: 1277 TDSDFGSCTDSRRCVAAYCMFIGDYLVSWKSKKQDTVSMSTAEAEFRAMSQGTKEMIWLS 1336

Query: 1474 HQLEDYQI-LESNISIYCDNTAAIH 1497
               +D+++       +YCDNTAA+H
Sbjct: 1337 RLFDDFKVPFIPPAYLYCDNTAALH 1361


>At4g10990 putative retrotransposon polyprotein
          Length = 1203

 Score =  177 bits (449), Expect = 4e-44
 Identities = 86/254 (33%), Positives = 152/254 (58%), Gaps = 1/254 (0%)

Query: 1245 ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQS 1304
            I++V +YVDD++  S + S  +   E++++EF++  +G  ++FLG+++ ++ EG  + Q 
Sbjct: 716  IIVVLVYVDDLMIASNDSSAVENLKELLRSEFKIKDLGPARFFLGLEIARSSEGISVCQR 775

Query: 1305 KYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDIL 1364
            KY + LL+   +     +  PM P   L KE  +       Y  ++G LLYL  +RPDI 
Sbjct: 776  KYAQNLLEDVGLSGCKPSSIPMDPNLHLTKEMGTLLPNATSYRELVGRLLYLCITRPDIT 835

Query: 1365 FSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTE 1424
            F+VH  ++F S P + H+ A  ++LRYLKG    GLMY  + E  L+G+ DAD+   +  
Sbjct: 836  FAVHTLSQFLSAPTDIHMQAAHKVLRYLKGNPGQGLMYSASSELCLNGFSDADWGTCKDS 895

Query: 1425 RKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQI-LE 1483
            R+S +  C +LG++L++W SK QS ++ S+ E+EY   A  + +++W++  L+D  + + 
Sbjct: 896  RRSVTGFCIYLGTSLITWKSKKQSVVSRSSTESEYRSLAQATCEIIWLQQLLKDLHVTMT 955

Query: 1484 SNISIYCDNTAAIH 1497
                ++CDN +A+H
Sbjct: 956  CPAKLFCDNKSALH 969


>At4g23160 putative protein
          Length = 1240

 Score =  176 bits (445), Expect = 1e-43
 Identities = 96/267 (35%), Positives = 145/267 (53%), Gaps = 1/267 (0%)

Query: 1232 SRYNSLLKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQ 1291
            S +   LK      L V +YVDDII  S N +   E    +++ F++  +G LKYFLG++
Sbjct: 264  SDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLE 323

Query: 1292 VDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIG 1351
            + ++  G  I Q KY  +LL +  +L    +  PM P+           V  K Y  +IG
Sbjct: 324  IARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIG 383

Query: 1352 TLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLS 1411
             L+YL  +R DI F+V+  ++F   PR  H  AV +IL Y+KGT   GL Y    E +L 
Sbjct: 384  RLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQ 443

Query: 1412 GYCDADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLW 1471
             + DA +   +  R+ST+  C FLG++L+SW SK Q  ++ S+AEAEY   +  + +M+W
Sbjct: 444  VFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMW 503

Query: 1472 MKHQLEDYQI-LESNISIYCDNTAAIH 1497
            +     + Q+ L     ++CDNTAAIH
Sbjct: 504  LAQFFRELQLPLSKPTLLFCDNTAAIH 530


>At2g15870 putative retroelement pol polyprotein
          Length = 1264

 Score =  174 bits (441), Expect = 4e-43
 Identities = 91/260 (35%), Positives = 148/260 (56%)

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            LK+   + ++V +YVDDI+  S N++   + S+ +Q  F++  +G+LKYFLG+++ +T  
Sbjct: 934  LKDCGGEYVVVLVYVDDIVIASTNEAAAVQLSQDLQNLFKLRDLGDLKYFLGLEITRTEA 993

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
            G  + Q KY  ELL    M+   +   PM P   L K D      ++ Y  ++GTL+YLT
Sbjct: 994  GISLCQRKYALELLASTGMINCKLVSVPMVPNLKLMKVDGELLEDREQYRRIVGTLMYLT 1053

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
             +RPDI F+V+   +F   P   HL A  R+L+Y+KGT   GL Y  + +  L G+ D+D
Sbjct: 1054 ITRPDITFAVNKLCQFSYAPTTAHLQAAHRVLQYIKGTVGQGLFYSASSDLTLKGFADSD 1113

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            +A     R ST+    F+G +L+S  SK Q  ++ S+AEAEY   A+ + +++W+   L 
Sbjct: 1114 WASCPDSRHSTTGFTMFVGDSLISLRSKKQHVVSRSSAEAEYRALALATCELVWLHTLLA 1173

Query: 1478 DYQILESNISIYCDNTAAIH 1497
                  +   ++ D+TAAI+
Sbjct: 1174 SLTAATTIPILFSDSTAAIY 1193


>At2g13940 putative retroelement pol polyprotein
          Length = 1501

 Score =  170 bits (430), Expect = 7e-42
 Identities = 94/264 (35%), Positives = 149/264 (55%), Gaps = 2/264 (0%)

Query: 1236 SLLKNIQNDI-LIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQ 1294
            SL    +N+I L V IYVDD++    +  + ++F + +   F M  +G+LKYFLGI+V +
Sbjct: 1168 SLFSYTRNNIELRVLIYVDDLLICGNDGYMLQKFKDYLSRCFSMKDLGKLKYFLGIEVSR 1227

Query: 1295 TPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLL 1354
             PEG ++ Q KY  +++     L S  A TP+     L  +D       K Y  ++G LL
Sbjct: 1228 GPEGIFLSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLL 1287

Query: 1355 YLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYC 1414
            YL  +RP++ +SVH+ A+F  +PRE H  A  R++RYLKG+   G++     +  L  YC
Sbjct: 1288 YLLHTRPELSYSVHVLAQFMQNPREAHFDAALRVVRYLKGSPGQGILLNADPDLTLEVYC 1347

Query: 1415 DADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKH 1474
            D+D+      R+S S     LG + +SW +K Q T++ S+AEAEY   +    ++ W++ 
Sbjct: 1348 DSDWQSCPLTRRSISAYVVLLGGSPISWKTKKQDTVSHSSAEAEYRAMSYALKEIKWLRK 1407

Query: 1475 QLEDYQILESN-ISIYCDNTAAIH 1497
             L++  I +S    +YCD+ AAIH
Sbjct: 1408 LLKELGIEQSTPARLYCDSKAAIH 1431


>At1g47650 hypothetical protein
          Length = 1409

 Score =  170 bits (430), Expect = 7e-42
 Identities = 89/260 (34%), Positives = 146/260 (55%)

Query: 1238 LKNIQNDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPE 1297
            +K    + +IV +YVDDI   S ++    + ++ +Q  F++  +G+LKYFLG+++ +T  
Sbjct: 915  IKEYDGEFVIVLVYVDDIAIASTSEGAAIQLTQDLQQRFKLRDLGDLKYFLGLEIARTEA 974

Query: 1298 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLT 1357
            G  I Q KY  ELL    M+       PM P   + K D      ++ Y  ++G L+YLT
Sbjct: 975  GISICQRKYALELLASTGMVNCKPVSVPMIPNVKMMKTDGDLLDDREQYRRIVGKLMYLT 1034

Query: 1358 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDAD 1417
             +R DI F+V+   +F S PR +HL A  R+L+Y+KG+   GL Y  + +  L G+ D+D
Sbjct: 1035 ITRLDITFAVNKLCQFSSAPRTSHLQAAYRVLQYIKGSVGQGLFYSASADLTLKGFADSD 1094

Query: 1418 YAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLE 1477
            +A     R+ST+    F+G +L+SW SK Q  ++ S+AEAEY   A+ + +++W+   L 
Sbjct: 1095 WASCPDSRRSTTGFSMFVGDSLISWRSKKQHVVSRSSAEAEYRALALVTCELVWLHTLLM 1154

Query: 1478 DYQILESNISIYCDNTAAIH 1497
              +       +Y D+T AI+
Sbjct: 1155 SLKASYLVPVLYSDSTTAIY 1174


>At4g19780 putative LTR retrotransposon (fragment)
          Length = 306

 Score =  168 bits (425), Expect = 3e-41
 Identities = 85/232 (36%), Positives = 134/232 (57%), Gaps = 1/232 (0%)

Query: 1267 EFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPM 1326
            +F+  +++ F++  +G  KYFLGI++ ++ +G  I Q KY  ELL     L S  +  P+
Sbjct: 3    QFTAELKSYFKLRDLGAAKYFLGIEIARSEKGISICQRKYILELLSTTGFLGSKPSSIPL 62

Query: 1327 HPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDILFSVHLCARFQSDPRETHLTAVK 1386
             P+  L KED         Y  ++G L+YL  +RPDI ++V+   +F   P   HL AV 
Sbjct: 63   DPSVKLNKEDGVPLTDSTSYRKLVGKLMYLQITRPDIAYAVNTLCQFSHAPTSVHLNAVH 122

Query: 1387 RILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTERKSTSENCQFLGSNLVSWASKW 1446
            ++LRYLKGT   GL Y    ++ L GY D+D+      R+  +  C F+G +LVSW SK 
Sbjct: 123  KVLRYLKGTVGQGLFYPADDKFDLRGYTDSDFGSCTDSRRCVAAYCMFIGDSLVSWKSKK 182

Query: 1447 QSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQI-LESNISIYCDNTAAIH 1497
            Q T+++STAEAE+   +  + +M+W+   L+D+++       +Y DNTAA+H
Sbjct: 183  QDTVSMSTAEAEFRAMSQGTKEMIWLSRLLDDFKVPFIPPAYLYSDNTAALH 234


>At1g26990 polyprotein, putative
          Length = 1436

 Score =  166 bits (419), Expect = 1e-40
 Identities = 87/253 (34%), Positives = 147/253 (57%), Gaps = 1/253 (0%)

Query: 1246 LIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQSK 1305
            L+V +YVDDI+  S  ++   E +  + + F++  +GE K+FLGI++ +  +G  + Q K
Sbjct: 1113 LVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGEPKFFLGIEIARNADGISLCQRK 1172

Query: 1306 YTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDILF 1365
            Y  +LL   +  +   +  PM P   L K+  +     K Y  ++G L YL  +RPDI F
Sbjct: 1173 YVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDGKQYRRILGKLQYLCLTRPDINF 1232

Query: 1366 SVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTER 1425
            +V   A++ S P + HL A+ +ILRYLKGT   GL Y     + L G+ D+D+      R
Sbjct: 1233 AVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYGADTNFDLRGFSDSDWQTCPDTR 1292

Query: 1426 KSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQILESN 1485
            +  +    F+G++LVSW SK Q  +++S+AEAEY   ++ + +++W+ + L  ++I  ++
Sbjct: 1293 RCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMSVATKELIWLGYILTAFKIPFTH 1352

Query: 1486 IS-IYCDNTAAIH 1497
             + +YCDN AA+H
Sbjct: 1353 PAYLYCDNEAALH 1365


>At3g25450 hypothetical protein
          Length = 1343

 Score =  164 bits (414), Expect = 5e-40
 Identities = 88/254 (34%), Positives = 148/254 (57%), Gaps = 1/254 (0%)

Query: 1244 DILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQ 1303
            +IL+V +YVDD++   +N  +   F + M  +FEMS +G+L Y+LGI+V Q+ +G  + Q
Sbjct: 1006 NILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQ 1065

Query: 1304 SKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDI 1363
             +Y K++L++  M +     TPM  +  L K     ++ +  Y   IG L YL  +RPD+
Sbjct: 1066 ERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDL 1125

Query: 1364 LFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRT 1423
             ++V + +R+  +PRE+H  A+K+ILRYL+GTT+ GL +KK     L GY D+ +  D  
Sbjct: 1126 SYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLD 1185

Query: 1424 ERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQILE 1483
            + KST  +  +L    ++W S+ Q  + LS+ EAE++     + Q +W++  L +    E
Sbjct: 1186 DGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQELLAEVIGTE 1245

Query: 1484 -SNISIYCDNTAAI 1496
               ++I  DN +AI
Sbjct: 1246 CEKVTIRVDNKSAI 1259



 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 35/163 (21%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 37  TADQKKLYSQHHKARAILLSAISYEEYEKITDREYAKGIFESLKMSHEGNKKVKESKALS 96
           +AD++K    +  ARA+L  +I      ++  ++ +  ++E++K  + G ++VKE++  +
Sbjct: 54  SADEEK----NDMARALLFQSIPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQT 109

Query: 97  LIQKYESFIMEPNESIEEMFSRFQLLVAGIRPLNKSYTTKYHVIRVIRSLP-ESWMPLVT 155
           L+ +++   M+ +E+I++   R   +      L +       V + ++SLP + ++ +V 
Sbjct: 110 LMAEFDKLKMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVA 169

Query: 156 SIELTRDVERMSLEELISILKCHELKHSEMLDSDEDELTLISK 198
           ++E   D++  + E++   +K +E +  +  DS ED+  L+++
Sbjct: 170 ALEQVLDLKTTTFEDIAGRIKTYEDRVWDDDDSHEDQGKLMTE 212


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  164 bits (414), Expect = 5e-40
 Identities = 88/264 (33%), Positives = 149/264 (56%), Gaps = 2/264 (0%)

Query: 1236 SLLKNIQNDILI-VQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQ 1294
            SL   ++  + I + IYVDD+I    +Q   ++F E + + F M  +G LKYFLGI+V +
Sbjct: 1000 SLFTLVKGSVRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVAR 1059

Query: 1295 TPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLL 1354
            +  G YI Q KY  +++ +  +L    A  P+     L    +      + Y  ++G L+
Sbjct: 1060 STTGIYICQRKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLI 1119

Query: 1355 YLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYC 1414
            YL  +R D+ FSVH+ ARF  +PRE H  A  R++RYLK     G+  +++ +++++G+C
Sbjct: 1120 YLAVTRLDLAFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWC 1179

Query: 1415 DADYAGDRTERKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKH 1474
            D+D+AGD   R+S +      G + +SW +K Q T++ S+AEAEY   +  ++++LW+K 
Sbjct: 1180 DSDWAGDPMSRRSVTGYFVQFGDSPISWKTKKQDTVSKSSAEAEYRAMSFLASELLWLKQ 1239

Query: 1475 QLEDYQILESNISIY-CDNTAAIH 1497
             L    +      I  CD+ +AI+
Sbjct: 1240 LLFSLGVSHVQPMIMCCDSKSAIY 1263


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  164 bits (414), Expect = 5e-40
 Identities = 87/254 (34%), Positives = 144/254 (56%), Gaps = 3/254 (1%)

Query: 1245 ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQS 1304
            IL + +YVDDI+   ++QSL ++  + ++  F M  +G  +YFLGIQ++    G ++HQ+
Sbjct: 1047 ILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFLGIQIEDYANGLFLHQT 1106

Query: 1305 KYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDIL 1364
             Y  ++L++  M +     TP+     L+  ++        +  + G L YLT +RPDI 
Sbjct: 1107 AYATDILQQAGMSDCNPMPTPLPQQ--LDNLNSELFAEPTYFRSLAGKLQYLTITRPDIQ 1164

Query: 1365 FSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTE 1424
            F+V+   +    P  +    +KRILRY+KGT  +GL  K+     LS Y D+D+AG +  
Sbjct: 1165 FAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTLTLSAYSDSDHAGCKNT 1224

Query: 1425 RKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQILE- 1483
            R+ST+  C  LGSNL+SW++K Q T++ S+ EAEY      + ++ W+   L D  I + 
Sbjct: 1225 RRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAAREITWISFLLRDLGIPQY 1284

Query: 1484 SNISIYCDNTAAIH 1497
                +YCDN +A++
Sbjct: 1285 LPTQVYCDNLSAVY 1298


>At1g59265 polyprotein, putative
          Length = 1466

 Score =  162 bits (410), Expect = 1e-39
 Identities = 93/254 (36%), Positives = 139/254 (54%), Gaps = 1/254 (0%)

Query: 1245 ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFLGIQVDQTPEGTYIHQS 1304
            I+ + +YVDDI+    + +L     + +   F +    EL YFLGI+  + P G ++ Q 
Sbjct: 1144 IVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQR 1203

Query: 1305 KYTKELLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYHGMIGTLLYLTASRPDIL 1364
            +Y  +LL + NM+ +    TPM P+  L     +       Y G++G+L YL  +RPDI 
Sbjct: 1204 RYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDIS 1263

Query: 1365 FSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKT*EYKLSGYCDADYAGDRTE 1424
            ++V+  ++F   P E HL A+KRILRYL GT N G+  KK     L  Y DAD+AGD+ +
Sbjct: 1264 YAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDD 1323

Query: 1425 RKSTSENCQFLGSNLVSWASKWQSTIALSTAEAEYILTAICSTQMLWMKHQLEDYQI-LE 1483
              ST+    +LG + +SW+SK Q  +  S+ EAEY   A  S++M W+   L +  I L 
Sbjct: 1324 YVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLT 1383

Query: 1484 SNISIYCDNTAAIH 1497
                IYCDN  A +
Sbjct: 1384 RPPVIYCDNVGATY 1397


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.347    0.151    0.513 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,094,034
Number of Sequences: 26719
Number of extensions: 1252949
Number of successful extensions: 9042
Number of sequences better than 10.0: 260
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 8314
Number of HSP's gapped (non-prelim): 660
length of query: 1564
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1452
effective length of database: 8,326,068
effective search space: 12089450736
effective search space used: 12089450736
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 67 (30.4 bits)