BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0128.9
(1596 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61330 copia-type polyprotein 761 0.0
At1g48710 hypothetical protein 757 0.0
At1g58140 hypothetical protein 756 0.0
At3g60170 putative protein 753 0.0
At2g15650 putative retroelement pol polyprotein 711 0.0
At1g32590 hypothetical protein, 5' partial 660 0.0
At3g59720 copia-type reverse transcriptase-like protein 654 0.0
At3g25450 hypothetical protein 629 e-180
At2g20460 putative retroelement pol polyprotein 628 e-180
At2g16000 putative retroelement pol polyprotein 622 e-178
At1g70010 hypothetical protein 589 e-168
At1g31210 putative reverse transcriptase 581 e-165
At2g05390 putative retroelement pol polyprotein 580 e-165
At1g37110 547 e-155
At2g21460 putative retroelement pol polyprotein 544 e-154
At1g26990 polyprotein, putative 535 e-152
At5g35820 copia-like retrotransposable element 525 e-149
At4g03810 putative retrotransposon protein 491 e-138
At2g19840 copia-like retroelement pol polyprotein 473 e-133
At2g15700 copia-like retroelement pol polyprotein 444 e-124
>At3g61330 copia-type polyprotein
Length = 1352
Score = 761 bits (1964), Expect = 0.0
Identities = 416/1049 (39%), Positives = 594/1049 (55%), Gaps = 32/1049 (3%)
Query: 549 KEDPESGYLRTRLSMLQISLIAPLK------HQSWYLDSGCSRHMTGEKRMFRELKLKPG 602
K + ++ Y+ ++ + L+A K + WYLDSG S HM G K MF EL
Sbjct: 301 KFEEKAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVR 360
Query: 603 GEVGFGGNEKGKIVGTGTICV----DSSPCIDNVLLVDGLTHNLLSISQLADKGYDVIFN 658
G V G K ++ G G I + I NV + + N+LS+ QL +KGYD+
Sbjct: 361 GNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLK 420
Query: 659 QKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASMR 718
+ Q + KN ++ + + AQ +K + EE W+WH R GH +
Sbjct: 421 DNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFG 478
Query: 719 KISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGP 778
+ LS+ +VRGLP + + +CE C GK K+ F ++ +PLEL+H D+ GP
Sbjct: 479 GLELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGP 537
Query: 779 VKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDH 838
+K +S+G Y ++ +DD+SR TWV FL K E +F F A V+ E I +RSD
Sbjct: 538 IKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDR 597
Query: 839 GGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWA 898
GGEF + +F + GI + PR+PQQNGVVERKNRT+ EMAR+ML+ + K WA
Sbjct: 598 GGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWA 657
Query: 899 EAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKS 958
EAV A Y+ NR + + KTP E W KP +S+ FG + + ++ K D KS
Sbjct: 658 EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKS 717
Query: 959 SKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGK 1018
K + +GY SKG++ YN D K S ++ FD++ + D + N D
Sbjct: 718 EKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNS----------NEEDYNF 767
Query: 1019 APEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSEETL- 1077
P E +E EP E PS T + T++ +E + + R +S E T
Sbjct: 768 FPH-FEEDEPEPTREEPPSEEPTTPPTSPTSSQIEE---SSSERTPRFRSIQELYEVTEN 823
Query: 1078 ---LSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKW 1134
L+L L + EP +A++ K W AM+EE+ KND W L P IG KW
Sbjct: 824 QENLTLFCLFAECEPMDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKW 883
Query: 1135 VFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLH 1194
V++ K N KG+V R KARLVA+GYSQ+ GIDY E FAPVARLE +RL+IS + + +H
Sbjct: 884 VYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIH 943
Query: 1195 QMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLL 1254
QMDVKSAFLNG + EEVY+ QP G+ + + D V +LKK LYGLKQAPRAW R+ +
Sbjct: 944 QMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFK 1003
Query: 1255 ENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGE 1314
E +F++ + L+ K K+DILI +YVDD+IF N S+ +EF + M EFEM+ +G
Sbjct: 1004 EKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGL 1063
Query: 1315 LKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQ 1374
+ Y++GI+V Q G +I Q Y KE+LKKF + +S TPM L K+ + V
Sbjct: 1064 MSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDP 1123
Query: 1375 KLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK 1434
++ ++GSL YLT +RPDIL++V + +R+ P TH A KRILRY+KGT N GL Y
Sbjct: 1124 TTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYS 1183
Query: 1435 KTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAA 1494
TS+YKL GY D+D+ GD +RKSTSG ++G +W SK+Q + LST EAEY++A
Sbjct: 1184 TTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAAT 1243
Query: 1495 ICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYV 1553
C +W+++ L++ + E I+ DN +AI+L+KNP+ H R+KHI+ ++H+IR+ V
Sbjct: 1244 SCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECV 1303
Query: 1554 QKGVLLLKFVDTDHQWADIFTKPLAEDRF 1582
K + L++V T Q AD FTKPL + F
Sbjct: 1304 SKKDVQLEYVKTHDQVADFFTKPLKRENF 1332
>At1g48710 hypothetical protein
Length = 1352
Score = 757 bits (1954), Expect = 0.0
Identities = 415/1049 (39%), Positives = 592/1049 (55%), Gaps = 32/1049 (3%)
Query: 549 KEDPESGYLRTRLSMLQISLIAPLK------HQSWYLDSGCSRHMTGEKRMFRELKLKPG 602
K + ++ Y+ ++ + L+A K + WYLDSG S HM G K MF EL
Sbjct: 301 KFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVR 360
Query: 603 GEVGFGGNEKGKIVGTGTICV----DSSPCIDNVLLVDGLTHNLLSISQLADKGYDVIFN 658
G V G K ++ G G I + I NV + + N+LS+ QL +KGYD+
Sbjct: 361 GNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLK 420
Query: 659 QKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASMR 718
+ Q + KN ++ + + AQ +K + EE W+WH R GH +
Sbjct: 421 DNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFG 478
Query: 719 KISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGP 778
+ LS+ +VRGLP + + +CE C GK K+ F ++ + LEL+H D+ GP
Sbjct: 479 GLELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGP 537
Query: 779 VKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDH 838
+K +S+G Y ++ +DD+SR TWV FL K E +F F A V+ E I +RSD
Sbjct: 538 IKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDR 597
Query: 839 GGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWA 898
GGEF + +F + GI + PR+PQQNGV ERKNRT+ EMAR+ML+ + K WA
Sbjct: 598 GGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWA 657
Query: 899 EAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKS 958
EAV A Y+ NR + + KTP E W K +S+ FG + + ++ K D KS
Sbjct: 658 EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKS 717
Query: 959 SKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGK 1018
K + +GY SKG++ YN D K S ++ FD++ + D + N D
Sbjct: 718 EKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNS----------NEEDYNF 767
Query: 1019 APEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSEETL- 1077
P E +E EP E PS T + T++ +E + + R +S E T
Sbjct: 768 FPH-FEEDEPEPTREEPPSEEPTTPPTSPTSSQIEE---SSSERTPRFRSIQELYEVTEN 823
Query: 1078 ---LSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKW 1134
L+L L + EP EA++ K W AM+EE+ KND W L P IG KW
Sbjct: 824 QENLTLFCLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKW 883
Query: 1135 VFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLH 1194
V++ K N KG+V R KARLVA+GY Q+ GIDY E FAPVARLE +RL+IS + + +H
Sbjct: 884 VYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIH 943
Query: 1195 QMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLL 1254
QMDVKSAFLNG + EEVY+ QP G+ + + D V +LKK+LYGLKQAPRAW R+ +
Sbjct: 944 QMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFK 1003
Query: 1255 ENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGE 1314
E +F++ + L+ K K+DILI +YVDD+IF N S+ +EF + M EFEM+ +G
Sbjct: 1004 EKDFIKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGL 1063
Query: 1315 LKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQ 1374
+ Y++GI+V Q G +I Q Y KE+LKKF M +S TPM L K+ + V
Sbjct: 1064 MSYYLGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDP 1123
Query: 1375 KLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK 1434
++ ++GSL YLT +RPDIL++V + +R+ P TH A KRILRY+KGT N GL Y
Sbjct: 1124 TTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYS 1183
Query: 1435 KTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAA 1494
TS+YKL GY D+D+ GD +RKSTSG ++G +W SK+Q + LST EAEY++A
Sbjct: 1184 TTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVAAT 1243
Query: 1495 ICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYV 1553
C +W+++ L++ + E I+ DN +AI+L+KNP+ H R+KHI+ ++H+IR+ V
Sbjct: 1244 SCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECV 1303
Query: 1554 QKGVLLLKFVDTDHQWADIFTKPLAEDRF 1582
K + L++V T Q ADIFTKPL + F
Sbjct: 1304 SKKDVQLEYVKTHDQVADIFTKPLKREDF 1332
>At1g58140 hypothetical protein
Length = 1320
Score = 756 bits (1952), Expect = 0.0
Identities = 408/1045 (39%), Positives = 581/1045 (55%), Gaps = 56/1045 (5%)
Query: 549 KEDPESGYLRTRLSMLQISLIAPLK------HQSWYLDSGCSRHMTGEKRMFRELKLKPG 602
K + ++ Y+ ++ + L+A K + WYLDSG S HM G K MF EL
Sbjct: 301 KFEEKANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVR 360
Query: 603 GEVGFGGNEKGKIVGTGTICV----DSSPCIDNVLLVDGLTHNLLSISQLADKGYDVIFN 658
G V G K ++ G G I + I NV + + N+LS+ QL +KGYD+
Sbjct: 361 GNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLK 420
Query: 659 QKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASMR 718
+ Q + KN ++ + + AQ +K + EE W+WH R GH +
Sbjct: 421 DNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFG 478
Query: 719 KISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGP 778
+ LS+ +VRGLP + + +CE C GK K+ F ++ +PLEL+H D+ GP
Sbjct: 479 GLELLSRKEMVRGLPCINHPNQ-VCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGP 537
Query: 779 VKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDH 838
+K +S+G Y ++ +DD+SR TWV FL K E +F F A V+ E I +RSD
Sbjct: 538 IKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDR 597
Query: 839 GGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWA 898
GGEF + +F + GI + PR+PQQNGV ERKNRT+ EMAR+ML+ + K WA
Sbjct: 598 GGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWA 657
Query: 899 EAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKS 958
EAV A Y+ NR + + KTP E W KP +S+ FG + + ++ K D KS
Sbjct: 658 EAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKS 717
Query: 959 SKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGK 1018
K + +GY SKG++ YN D K S ++ FD++ + D + E + DK +
Sbjct: 718 EKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPE 777
Query: 1019 APEEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSEETLL 1078
E P E+ P++SQ +K
Sbjct: 778 PTREEPPSEEPTTPPTSPTSSQIEEKC--------------------------------- 804
Query: 1079 SLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRN 1138
EP EA++ K W AM+EE+ KND W L P IG KWV++
Sbjct: 805 ---------EPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKA 855
Query: 1139 KLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDV 1198
K N KG+V R KARLVA+GYSQ+ GIDY E FAPVARLE +RL+IS + + +HQMDV
Sbjct: 856 KKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDV 915
Query: 1199 KSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEF 1258
KSAFLNG + EEVY+ QP G+ + + D V +LKK+LYGLKQAPRAW R+ + E +F
Sbjct: 916 KSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDF 975
Query: 1259 VRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYF 1318
++ + L+ K K+DILI +YVDD+IF N S+ +EF + M EFEM+ +G + Y+
Sbjct: 976 IKCPYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYY 1035
Query: 1319 MGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYR 1378
+GI+V Q G +I Q Y KE+LKKF M +S TPM L K+ + V ++
Sbjct: 1036 LGIEVKQEDNGIFITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFK 1095
Query: 1379 GMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSE 1438
++GSL YLT +RPDIL++V + +R+ P TH A KRILRY+KGT N GL Y TS+
Sbjct: 1096 SLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSD 1155
Query: 1439 YKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICST 1498
YKL GY D+D+ GD +RKSTSG ++G +W SK+Q + LST EAEY++A C
Sbjct: 1156 YKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVC 1215
Query: 1499 QMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGV 1557
+W+++ L++ + E I+ DN +AI+L+KNP+ H R+KHI+ ++H+IR+ V K
Sbjct: 1216 HAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKD 1275
Query: 1558 LLLKFVDTDHQWADIFTKPLAEDRF 1582
+ L++V T Q ADIFTKPL + F
Sbjct: 1276 VQLEYVKTHDQVADIFTKPLKREDF 1300
>At3g60170 putative protein
Length = 1339
Score = 753 bits (1945), Expect = 0.0
Identities = 421/1039 (40%), Positives = 603/1039 (57%), Gaps = 22/1039 (2%)
Query: 573 KHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSS---PCI 629
+ + W+LDSGCS HMTG K F EL+ V G + + +VG G++ V + I
Sbjct: 296 RDEVWFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKVNGVTQVI 355
Query: 630 DNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSE 689
V V L +NLLS+ QL ++G ++ +C+ G+++ + N ++ + S+
Sbjct: 356 PEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASK 415
Query: 690 LEAQNVKCLLS---VDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEAC 746
+ +N CL + +D+E +WH R GH + + L+ +V GLP LK A+ +C C
Sbjct: 416 PQ-KNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVIGLPILK-ATKEICAIC 473
Query: 747 QKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFL 806
GK + K +S L+L+H D+ GP+ S GKRY + +DD++R TWV FL
Sbjct: 474 LTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSGKRYILSFIDDFTRKTWVYFL 533
Query: 807 TRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTP 866
K E+ F F A V+ E + +R+D GGEF +++F S+GI+ + TP
Sbjct: 534 HEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNEFGEFCRSHGISRQLTAAFTP 593
Query: 867 QQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWK 926
QQNGV ERKNRT+ R+ML E + K FW+EA + +IQNR + TP E W
Sbjct: 594 QQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATKWSVHIQNRSPTAAVEGMTPEEAWS 653
Query: 927 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEES 986
KP + YF FGC+ YV + K D KS KC+ LG SE SK +R Y+ K I S
Sbjct: 654 GRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVFLGVSEESKAWRLYDPVMKKIVIS 713
Query: 987 IHVRFDD--KLDSDQSKLVEKFADLSINVSDKGKAPEEVEPEEDEPEEEAGPSN---SQT 1041
V FD+ D DQ+ + K L D K E VEP G N S
Sbjct: 714 KDVVFDEDKSWDWDQADVEAKEVTLECGDEDDEKNSEVVEPIAVASPNHVGSDNNVSSSP 773
Query: 1042 LKKSRITAAHPKELILGNKDEPVRTKSAFRPSE----ETLLSLKGLVSLIE--PKSIDEA 1095
+ A P + + P + + E E LS+ L+ + E P D+A
Sbjct: 774 ILAPSSPAPSPVAAKVTRERRPPGWMADYETGEGEEIEENLSVMLLMMMTEADPIQFDDA 833
Query: 1096 LQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGDVVRNKARLVA 1155
++DK W AME E+ KN+ W L P+ IG KWV++ KLNE G+V + KARLVA
Sbjct: 834 VKDKIWREAMEHEIESIVKNNTWELTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVA 893
Query: 1156 QGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQ 1215
+GY+Q GIDYTE FAPVARL+ +R +++ S N + Q+DVKSAFL+G + EEVYV Q
Sbjct: 894 KGYAQCYGIDYTEVFAPVARLDTVRTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQ 953
Query: 1216 PPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDD 1275
P GF E + + V+KL+K+LYGLKQAPRAWY R+ ++ L+ EF R + TLF KT +
Sbjct: 954 PEGFIREGEEEKVYKLRKALYGLKQAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGN 1013
Query: 1276 ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQS 1335
ILIV +YVDD+IF +++++C EF + M EFEMS +G++K+F+GI+V Q+ G +I Q
Sbjct: 1014 ILIVSLYVDDLIFTGSDKAMCDEFKKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQR 1073
Query: 1336 KYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRGMIGSLLYLTASRPDIL 1395
+Y +E+L +F M ES K P+ P L K+ KV + +++ ++GSL+YLT +RPD++
Sbjct: 1074 RYAREVLARFGMDESNAVKNPIVPGTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLM 1133
Query: 1396 FSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMY--KKTSEYKLSGYCDADYAGDR 1453
+ V L +RF S+PR +H A KRILRYLKGT LG+ Y +K KL + D+DYAGD
Sbjct: 1134 YGVCLISRFMSNPRMSHWLAAKRILRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDL 1193
Query: 1454 TERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQIL 1513
+R+STSG + S + WASK+Q +ALST EAEYI+AA C+ Q +W++ LE
Sbjct: 1194 NDRRSTSGFVFLMASGAICWASKKQPVVALSTTEAEYIAAAFCACQCVWLRKVLEKLGAE 1253
Query: 1514 E-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWADI 1572
E S I CDN++ I LSK+P+LH ++KHIEV+ H++RD V V+ L++ T+ Q ADI
Sbjct: 1254 EKSATVINCDNSSTIQLSKHPVLHGKSKHIEVRFHYLRDLVNGDVVKLEYCPTEDQVADI 1313
Query: 1573 FTKPLAEDRFNFILKNLNM 1591
FTKPL ++F + L M
Sbjct: 1314 FTKPLKLEQFEKLRALLGM 1332
>At2g15650 putative retroelement pol polyprotein
Length = 1347
Score = 711 bits (1836), Expect = 0.0
Identities = 397/1044 (38%), Positives = 590/1044 (56%), Gaps = 46/1044 (4%)
Query: 572 LKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPC 628
L+ W +DSGC+ HMT E+R F + + + G G I V
Sbjct: 321 LREDVWLVDSGCTNHMTKEERYFSNINKSIKVPIRVRNGDIVMTAGKGDITVMTRHGKRI 380
Query: 629 IDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLS 688
I NV LV GL NLLS+ Q+ GY V F K C + +G + N + + +KI+LS
Sbjct: 381 IKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRC-IIQDANGKEIMNIEMTDKSFKIKLS 439
Query: 689 ELEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQK 748
+E + + + +E WH+RLGH S +++ Q+ LV GLP K + C+AC
Sbjct: 440 SVEEEAMTANVQTEE---TWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKET-CKACNL 495
Query: 749 GKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTR 808
GK ++ F ++ T LE++H D+ GP++ +SI G RY ++ +DDY+ WV FL +
Sbjct: 496 GKQSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQ 555
Query: 809 KDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQ 868
K E+ F F A V+ + C I +R E + GI + P +PQQ
Sbjct: 556 KSETFATFKKFKALVEKQSNCSIKTLRP----------MEVFCEDEGINRQVTLPYSPQQ 605
Query: 869 NGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNK-TPYELWKN 927
NG ERKNR+L EMAR+ML E + WAEAV T+ Y+QNR+ + I + TP E W
Sbjct: 606 NGAAERKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCG 665
Query: 928 IKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESI 987
KPN+S+ FG +CYV + K DAK+ +L+GYS ++KG+R + + + +E S
Sbjct: 666 HKPNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSR 725
Query: 988 HVRF--DDKLDSDQSKLVEKFADLSINVSDKGKAPEEVEPEE-----DEPEEEAGPSNSQ 1040
V F D K D D+ + V+K +SIN + + +E + D G ++S
Sbjct: 726 DVVFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQETSSHDLSQIDDHANNGEGETSSH 785
Query: 1041 TL-----KKSRITAAHPKELILGNKDEPVRTKSAFRPSEETLLSLKG-LVSLIEPKSIDE 1094
L ++ R T+ PK+ + + K+ ++E ++ LV+ EP++ DE
Sbjct: 786 VLSQVNDQEERETSESPKKY---KSMKEILEKAPRMENDEAAQGIEACLVANEEPQTYDE 842
Query: 1095 ALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGDVVRNKARLV 1154
A DK+W AM EE+ KN W LV KPE VI KW+++ K + G+ V++KARLV
Sbjct: 843 ARGDKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDASGNHVKHKARLV 902
Query: 1155 AQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVH 1214
A+G+SQ+ GIDY ETFAPV+R + IR L++++ L+QMDVKSAFLNG + EEVYV
Sbjct: 903 ARGFSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAFLNGELEEEVYVT 962
Query: 1215 QPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKD 1274
QPPGF E K + V +L K+LYGLKQAPRAWYER+ S+ ++N F R D L+ K +
Sbjct: 963 QPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSMNDAALYSKKKGE 1022
Query: 1275 DILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQ 1334
D+LIV +YVDD+I N L F + M+ EFEM+ +G L YF+G++V+Q G ++ Q
Sbjct: 1023 DVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGMEVNQDDSGIFLSQ 1082
Query: 1335 SKYTKELLKKFNMLESTVAKTPMHPTCIL------EKEYKSGKVCQKLYRGMIGSLLYLT 1388
KY +L+ KF M ES TP+ P +KE+ YR ++G LLYL
Sbjct: 1083 EKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFAD----PTKYRRIVGGLLYLC 1138
Query: 1389 ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDAD 1448
ASRPD++++ +R+ S P H KR+LRY+KGT+N G+++ +L GY D+D
Sbjct: 1139 ASRPDVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPRLVGYSDSD 1198
Query: 1449 YAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLE 1508
+ G ++KST+G LG + W S +Q T+A STAEAEYI+ + Q +W++ E
Sbjct: 1199 WGGSLEDKKSTTGYVFTLGLAMFCWQSCKQQTVAQSTAEAEYIAVCAATNQAIWLQRLFE 1258
Query: 1509 DYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDH 1567
D+ + + IPI CDN +AI++ +NP+ H R KHIE+K+HF+R+ KG++ L++ +
Sbjct: 1259 DFGLKFKEGIPILCDNKSAIAIGRNPVQHRRTKHIEIKYHFVREAEHKGLIQLEYCKGED 1318
Query: 1568 QWADIFTKPLAEDRFNFILKNLNM 1591
Q AD+ TK L+ RF + + L +
Sbjct: 1319 QLADVLTKALSVSRFEGLRRKLGV 1342
>At1g32590 hypothetical protein, 5' partial
Length = 1263
Score = 660 bits (1703), Expect = 0.0
Identities = 369/1040 (35%), Positives = 563/1040 (53%), Gaps = 50/1040 (4%)
Query: 561 LSMLQISLIAPLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGT 620
L M + I + Q W+LDSGCS HM G + F EL V G + + + G G
Sbjct: 242 LLMAHVEQIGDEEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGK 301
Query: 621 ICVDSS---PCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSK 677
+ ++ I +V V GL +NL S+ QL KG I C + + ++ +S
Sbjct: 302 LRLEVDGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHST 361
Query: 678 RKNN----IYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLP 733
N ++ E + +CL + + +WH+R GH + + + L++ +V+GLP
Sbjct: 362 MTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLP 421
Query: 734 NLKFASD-ALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMV 792
+ A+C+ C KGK + ++ +++ L+L+H D+ GP+ S GKRY +
Sbjct: 422 KFDLGEEEAVCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILN 481
Query: 793 IVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFD 852
+DD+SR W L+ K E+ F F A+V+ E ++V +RSD GGE+ + +F+
Sbjct: 482 FIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCK 541
Query: 853 SYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRIS 912
+GI + TPQQNGV ERKNR++ M R ML E + + FW EAV A YI NR
Sbjct: 542 EFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSP 601
Query: 913 VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKG 972
+ + + TP E W + KP++ + FG + Y L + K D KS KC++ G S+ SK
Sbjct: 602 SKALNDITPEEKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKA 661
Query: 973 FRFYNTDAKTIEESIHVRFDDKLD---SDQSKLVEKFADLSINVSDKGKAPE------EV 1023
+R Y+ I S V+FD++ D+S E D S + + PE +
Sbjct: 662 YRLYDPATGKILISRDVQFDEERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQD 721
Query: 1024 EPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSEETLLSLKGL 1083
+ E +E EE + Q L ++ + KD V +E L
Sbjct: 722 QEETEEEEETVAETVHQNLPAVGTGGVRQRQQPVWMKDYVVGNARVLITQDEEDEVLALF 781
Query: 1084 VSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEK 1143
+ +P +EA Q + W AME E+ +N+ W LV+ PE VIG KW+F+ K NEK
Sbjct: 782 IGPDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEK 841
Query: 1144 GDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFL 1203
G+V + KARLVA+GY Q+ G+D+ E FAPVA+ + IRL++ + + Q+DVKSAFL
Sbjct: 842 GEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFL 901
Query: 1204 NGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKV 1263
+G + E+V+V QP GFE E++ V+KLKK+LYGLKQAPRAWY R+ F + F +
Sbjct: 902 HGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYC 961
Query: 1264 DTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQV 1323
+ TLF K + D L+V +YVDD+I+ ++ + + F M EF M+ +G++KYF+G++V
Sbjct: 962 EHTLFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKMKYFLGVEV 1021
Query: 1324 DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRGMIGS 1383
Q G +I+Q KY E++KK+ M K P+ P +K K+G V
Sbjct: 1022 IQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPG---QKLTKAGAV----------- 1067
Query: 1384 LLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSG 1443
+R+ P E HL AVKRILRY++GT +LG+ Y++ +L G
Sbjct: 1068 ------------------SRYMESPNEQHLLAVKRILRYVQGTLDLGIQYERGGATELVG 1109
Query: 1444 YCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWM 1503
+ D+DYAGD +RKSTSG LG ++WASK+Q + LST EAE++SA+ + Q +W+
Sbjct: 1110 FVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWL 1169
Query: 1504 KHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKF 1562
++ LE+ E ++CDN++ I LSKNP+LH R+KHI V++HF+R+ V++G + L +
Sbjct: 1170 RNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRELVKEGTIRLDY 1229
Query: 1563 VDTDHQWADIFTKPLAEDRF 1582
T Q ADI TK + + F
Sbjct: 1230 CTTTDQVADIMTKAVKREVF 1249
>At3g59720 copia-type reverse transcriptase-like protein
Length = 1272
Score = 654 bits (1688), Expect = 0.0
Identities = 377/1042 (36%), Positives = 545/1042 (52%), Gaps = 106/1042 (10%)
Query: 553 ESGYLRTRLSMLQISLIAPLK------HQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVG 606
++ Y+ ++ + L+A K + WYLDSG S HM G K MF EL G V
Sbjct: 305 KANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVA 364
Query: 607 FGGNEKGKIVGTGTICV----DSSPCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSC 662
G K ++ G G I + I NV + + N+LS+ QL +KGYD+ +
Sbjct: 365 LGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRLKDNNL 424
Query: 663 RAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQ 722
+ + KN ++ + + AQ +K + EE W+WH R GH + +
Sbjct: 425 SIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLK--MCYKEESWLWHLRFGHLNFGGLEL 482
Query: 723 LSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIE 782
LS+ +VRGLP + + +CE C G K+ F ++ +PLEL+H D+ GP+K +
Sbjct: 483 LSRKEMVRGLPCINHPNQ-VCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPK 541
Query: 783 SIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEF 842
S+G Y ++ +DD+SR TWV FL K E +F F A V+ E I +RSD GGEF
Sbjct: 542 SLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEF 601
Query: 843 ENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVN 902
+ +F + GI + PR+PQQNGV ERKNRT+ EMAR+ML+ + K WAEAV
Sbjct: 602 TSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVA 661
Query: 903 TACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCL 962
A Y+ NR + + KTP E W KP +S+ FG + + ++ +K D KS K +
Sbjct: 662 CAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYI 721
Query: 963 LLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGKAPEE 1022
+GY SKG++ YN D K S ++ FD++ + D + E + DK + E
Sbjct: 722 FIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDKPEPTRE 781
Query: 1023 VEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSE-ETLLSLK 1081
P E+ P++SQ + S + + + + +E + L+L
Sbjct: 782 EPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI-----------QELYEVTENQENLTLF 830
Query: 1082 GLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLN 1141
L + EP EA++ K W AM+EE+ KND W L P IG KWV++ K N
Sbjct: 831 CLFAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKN 890
Query: 1142 EKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSA 1201
KG+V R KARLVA+GYSQ+ GIDY E FAPVARLE +RL+IS + + +HQMDVKSA
Sbjct: 891 SKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSA 950
Query: 1202 FLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRG 1261
FLNG + EEVY+ QP G+ + + D V +LKK LYGLKQAPRAW R+ + E +F++
Sbjct: 951 FLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKC 1010
Query: 1262 KVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGI 1321
+ L+ K K+DILI +YVDD+IF N S+ +EF + M EFEM+ +G + Y++GI
Sbjct: 1011 PYEHALYIKIQKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGI 1070
Query: 1322 QVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRGMI 1381
+V Q G +I Q Y KE+LKKF M +S + ++
Sbjct: 1071 EVKQEDNGIFITQEGYAKEVLKKFKMDDSNPS--------------------------LV 1104
Query: 1382 GSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKL 1441
GSL YLT +RPDIL++V + +R+ P TH A KRILRY+KGT N GL Y TS
Sbjct: 1105 GSLRYLTCTRPDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTS---- 1160
Query: 1442 SGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQML 1501
DY +C +
Sbjct: 1161 ------DY------------------------------------------KLVVCHA--I 1170
Query: 1502 WMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLL 1560
W+++ L++ + E I+ DN +AI+L+KNP+ H R+KHI+ ++H+IR+ V K + L
Sbjct: 1171 WLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRECVSKKDVQL 1230
Query: 1561 KFVDTDHQWADIFTKPLAEDRF 1582
++V T Q ADIFTKPL + F
Sbjct: 1231 EYVKTHDQVADIFTKPLKREDF 1252
>At3g25450 hypothetical protein
Length = 1343
Score = 629 bits (1622), Expect = e-180
Identities = 365/1038 (35%), Positives = 568/1038 (54%), Gaps = 41/1038 (3%)
Query: 574 HQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSS----PCI 629
+ +WYLD+G S HMTG + F +L G+V FG + I G G+I S +
Sbjct: 289 NNAWYLDNGASNHMTGNRAWFCKLDEMITGKVRFGDDSCINIKGKGSIPFISKGGERKIL 348
Query: 630 DNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKR-KNNIYKIRLS 688
+V + L N+LS+ Q + G D+ + + +G++L ++R +N +YK+
Sbjct: 349 FDVYYIPDLKSNILSLGQATESGCDIRMREDYL-TLHDREGNLLIKAQRSRNRLYKV--- 404
Query: 689 ELEAQNVKCL-LSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQ 747
LE +N KCL L+ E +WH RLGH S I + K LV G+ + C +C
Sbjct: 405 SLEVENSKCLQLTTTNESTIWHARLGHISFETIKAMIKKELVIGISSSVPQEKETCGSCL 464
Query: 748 KGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLT 807
GK + F ++ LEL+H DL GP+ + KRY V++DD+SR+ W L
Sbjct: 465 FGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLIDDHSRYMWSILLK 524
Query: 808 RKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQ 867
K E+ F F A V+ E I R+D GGEF + +F+ GI + P TPQ
Sbjct: 525 EKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKEGINRHLTAPYTPQ 584
Query: 868 QNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKN 927
QNGVVER+NRTL M R++L+ M + W EAV + Y+ NR+ R + N+TPYE++K+
Sbjct: 585 QNGVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTRSLSNQTPYEVFKH 644
Query: 928 IKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESI 987
KPN+ + FGCV Y L K D +S + LG SK +R + + I S
Sbjct: 645 KKPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYRLLDPTKRRIFVSR 704
Query: 988 HVRFDDKLD----SDQSKLVEKFADLSINVSD---KGKAPEEVEPEEDEPEEEAGPSNSQ 1040
V FD+ S+ ++ +I +S+ G ++ E +E EE +
Sbjct: 705 DVVFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDISTEPEETEEAEINGEDE 764
Query: 1041 TLKKSRITAAHPKELILGNKDEPVRT--KSAFRPS-------------EETLLSLKGLVS 1085
+ + T H + + +PVR + RP+ E LL++
Sbjct: 765 NIIEEAETEEHDQSQ---EEPQPVRRSQRQVIRPNYLKDYVLCAEIEAEHLLLAVND--- 818
Query: 1086 LIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGD 1145
EP EA + K+W A +EE+ KN WSLV P IG KWVF+ K N G
Sbjct: 819 --EPWDFKEANKSKEWRDACKEEIQSIEKNRTWSLVDLPVGSKAIGVKWVFKLKHNSDGS 876
Query: 1146 VVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNG 1205
+ + KARLVA+GY Q+ G+D+ E FAPVAR+E +RL+I+ + ++ +H +DVK+AFL+G
Sbjct: 877 INKYKARLVAKGYVQRHGVDFEEVFAPVARIETVRLIIALAASNGWEIHHLDVKTAFLHG 936
Query: 1206 YISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDT 1265
+ E+VYV QP GF +++ + V+KL K+LYGL+QAPRAW +L+ L E +F + +
Sbjct: 937 ELREDVYVSQPEGFTNKESKEKVYKLHKALYGLRQAPRAWNTKLNEILKELKFEKCHKEP 996
Query: 1266 TLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQ 1325
+L+ K ++IL+V +YVDD++ +N + F + M +FEMS +G+L Y++GI+V Q
Sbjct: 997 SLYRKQEGENILVVAVYVDDLLVTGSNLDIILNFKKGMVGKFEMSDLGKLTYYLGIEVLQ 1056
Query: 1326 TPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRGMIGSLL 1385
+ +G + Q +Y K++L++ M + TPM + L K ++ + YR IG L
Sbjct: 1057 SKDGITLKQERYAKKILEEAGMSKCNTVNTPMIASLELSKAQDEKRIDETDYRRNIGCLR 1116
Query: 1386 YLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYC 1445
YL +RPD+ ++V + +R+ +PRE+H A+K+ILRYL+GTT+ GL +KK L GY
Sbjct: 1117 YLLHTRPDLSYNVGILSRYLQEPRESHGAALKQILRYLQGTTSHGLYFKKGENAGLIGYS 1176
Query: 1446 DADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKH 1505
D+ + D + KST G+ +L ++W S++Q + LS+ EAE+++A + Q +W++
Sbjct: 1177 DSSHNVDLDDGKSTGGHIFYLNDCPITWCSQKQQVVTLSSCEAEFMAATEAAKQAIWLQE 1236
Query: 1506 QLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKFVD 1564
L + E + I DN +AI+L+KNP+ H R+KHI ++HFIR+ V+ G + ++ V
Sbjct: 1237 LLAEVIGTECEKVTIRVDNKSAIALTKNPVFHGRSKHIHRRYHFIRECVENGQIEVEHVP 1296
Query: 1565 TDHQWADIFTKPLAEDRF 1582
Q ADI TK L + +F
Sbjct: 1297 GVRQKADILTKALGKIKF 1314
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 628 bits (1620), Expect = e-180
Identities = 362/1037 (34%), Positives = 566/1037 (53%), Gaps = 37/1037 (3%)
Query: 572 LKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSSPCIDN 631
L +W +DSG + H++ ++++F+ L V +I G GT+ ++ + N
Sbjct: 437 LSSDTWVIDSGATHHVSHDRKLFQTLDTSIVSFVNLPTGPNVRISGVGTVLINKDIILQN 496
Query: 632 VLLVDGLTHNLLSISQLA-DKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSEL 690
VL + NL+SIS L D G VIF+ C+ G L KR N+Y + ++
Sbjct: 497 VLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLD-TQS 555
Query: 691 EAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGK 750
A +V ++ V VWH+RLGH S ++ LS+ V G K A C C K
Sbjct: 556 PAISVNAVVDVS----VWHKRLGHPSFSRLDSLSE---VLGTTRHKNKKSAYCHVCHLAK 608
Query: 751 FTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKD 810
K+ F + N + S ELLHID++GP +E++ G +Y + IVDD+SR TW+ L K
Sbjct: 609 QKKLSFPSANNICNST-FELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLLKSKS 667
Query: 811 ESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNG 870
+ VF FI V+N+ R+ VRSD+ E F + + GI SCP TP+QN
Sbjct: 668 DVLTVFPAFIDLVENQYDTRVKSVRSDNAKELA---FTEFYKAKGIVSFHSCPETPEQNS 724
Query: 871 VVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKP 930
VVERK++ + +AR ++ ++ M+ +W + V TA ++ NR + NKTP+E+ P
Sbjct: 725 VVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLTGKLP 784
Query: 931 NISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVR 990
+ S FGC+CY + + HKF +S C+ LGY KG++ + ++ + S +V
Sbjct: 785 DYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHISRNVE 844
Query: 991 FDDKL----DSDQSKLVEKFADLSINVSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSR 1046
F ++L S QS ++ G + P + PS + K R
Sbjct: 845 FHEELFPLASSQQSATTASDVFTPMDPLSSGNSITS-----HLPSPQISPSTQ--ISKRR 897
Query: 1047 ITA--AHPKEL--ILGNKDE--PVRTKSAFRP-SEETLLSLKGLVSLIEPKSIDEALQDK 1099
IT AH ++ NKD+ P+ + ++ S +L + + + P+S EA K
Sbjct: 898 ITKFPAHLQDYHCYFVNKDDSHPISSSLSYSQISPSHMLYINNISKIPIPQSYHEAKDSK 957
Query: 1100 DWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGYS 1159
+W A+++E+ + D W + P +G KWVF K + G + R KAR+VA+GY+
Sbjct: 958 EWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFHADGSLERFKARIVAKGYT 1017
Query: 1160 QQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGF 1219
Q+EG+DYTETF+PVA++ ++LL+ S + L+Q+D+ +AFLNG + E +Y+ P G+
Sbjct: 1018 QKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDISNAFLNGDLEETIYMKLPDGY 1077
Query: 1220 EDEK----KPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKDD 1275
D K P+ V +LKKS+YGLKQA R W+ + S+ LL F + D TLF + +
Sbjct: 1078 ADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLALGFEKQHGDHTLFVRCIGSE 1137
Query: 1276 ILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQS 1335
+++ +YVDDI+ S + + +E ++A F++ +G LKYF+G++V +T EG + Q
Sbjct: 1138 FIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPLKYFLGLEVARTSEGISLSQR 1197
Query: 1336 KYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRGMIGSLLYLTASRPDIL 1395
KY ELL +ML+ + PM P L K +++YR ++G L+YLT +RPDI
Sbjct: 1198 KYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKEMYRRLVGKLMYLTITRPDIT 1257
Query: 1396 FSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTE 1455
F+V+ +F S PR HL AV ++L+Y+KGT GL Y + L GY DAD+
Sbjct: 1258 FAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSAEDDLTLKGYTDADWGTCPDS 1317
Query: 1456 RKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILES 1515
R+ST+G F+GS+L+SW SK+Q T++ S+AEAEY + A+ S +M W+ L ++ S
Sbjct: 1318 RRSTTGFTMFVGSSLISWRSKKQPTVSRSSAEAEYRALALASCEMAWLSTLLLALRV-HS 1376
Query: 1516 NIPI-YCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWADIFT 1574
+PI Y D+TAA+ ++ NP+ H R KHIE+ H +R+ + G L L V T Q ADI T
Sbjct: 1377 GVPILYSDSTAAVYIATNPVFHERTKHIEIDCHTVREKLDNGQLKLLHVKTKDQVADILT 1436
Query: 1575 KPLAEDRFNFILKNLNM 1591
KPL +F +L +++
Sbjct: 1437 KPLFPYQFAHLLSKMSI 1453
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 622 bits (1605), Expect = e-178
Identities = 357/1039 (34%), Positives = 567/1039 (54%), Gaps = 37/1039 (3%)
Query: 572 LKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSSPCIDN 631
L +W +DSG + H++ ++ +F L V KI G GT+ ++ + N
Sbjct: 426 LSSATWVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDDILLKN 485
Query: 632 VLLVDGLTHNLLSISQLADK-GYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSEL 690
VL + NL+SIS L D G VIF++ SC I G +L +R N+Y + + +
Sbjct: 486 VLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLDVGD- 544
Query: 691 EAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGK 750
++ +V ++ + +WHRRLGHAS++++ +S G K C C K
Sbjct: 545 QSISVNAVVDIS----MWHRRLGHASLQRLDAISDS---LGTTRHKNKGSDFCHVCHLAK 597
Query: 751 FTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKD 810
K+ F N V +LLHID++GP +E++ G +Y + IVDD+SR TW+ L K
Sbjct: 598 QRKLSFPTSNKVC-KEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKS 656
Query: 811 ESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNG 870
E VF FI QV+N+ ++ VRSD+ E KF S + GI SCP TP+QN
Sbjct: 657 EVLTVFPAFIQQVENQYKVKVKAVRSDNAPEL---KFTSFYAEKGIVSFHSCPETPEQNS 713
Query: 871 VVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKP 930
VVERK++ + +AR ++ ++ + W + V TA ++ NR + ++NKTPYE+ P
Sbjct: 714 VVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAP 773
Query: 931 NISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVR 990
FGC+CY + + HKF +S CL LGY KG++ + ++ T+ S +V+
Sbjct: 774 VYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQ 833
Query: 991 FDDKL--------DSDQSKLVEKFADLSINV-SDKGKAPEEVEPE-EDEPEEEAGPSNSQ 1040
F +++ KL +S + SD +P + + D P + +SQ
Sbjct: 834 FHEEVFPLAKNPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQ----ISSQ 889
Query: 1041 TLKK--SRITAAHPKELILGNKDEPVRTKSAFRPSEETLLSLKGLVSLIEPKSIDEALQD 1098
++K + + H + +K T S + S + + + + P + EA
Sbjct: 890 RVRKPPAHLNDYHCNTMQSDHKYPISSTISYSKISPSHMCYINNITKIPIPTNYAEAQDT 949
Query: 1099 KDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGDVVRNKARLVAQGY 1158
K+W A++ E+ K + W + P+ +G KWVF K G++ R KARLVA+GY
Sbjct: 950 KEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGNLERYKARLVAKGY 1009
Query: 1159 SQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPG 1218
+Q+EG+DYT+TF+PVA++ I+LL+ S + L Q+DV +AFLNG + EE+++ P G
Sbjct: 1010 TQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEG 1069
Query: 1219 FEDEK----KPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKD 1274
+ + K + V +LK+S+YGLKQA R W+++ SS LL F + D TLF K Y
Sbjct: 1070 YAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDG 1129
Query: 1275 DILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQ 1334
+ +IV +YVDDI+ S +++ + +E + F++ +G+LKYF+G++V +T G I Q
Sbjct: 1130 EFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVARTTAGISICQ 1189
Query: 1335 SKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKL--YRGMIGSLLYLTASRP 1392
KY ELL+ ML PM P + K+ G + + + YR ++G L+YLT +RP
Sbjct: 1190 RKYALELLQSTGMLACKPVSVPMIPNLKMRKD--DGDLIEDIEQYRRIVGKLMYLTITRP 1247
Query: 1393 DILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGD 1452
DI F+V+ +F S PR THLTA R+L+Y+KGT GL Y +S+ L G+ D+D+A
Sbjct: 1248 DITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTLKGFADSDWASC 1307
Query: 1453 RTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQI 1512
+ R+ST+ F+G +L+SW SK+Q T++ S+AEAEY + A+ + +M+W+ L Q
Sbjct: 1308 QDSRRSTTSFTMFVGDSLISWRSKKQHTVSRSSAEAEYRALALATCEMVWLFTLLVSLQA 1367
Query: 1513 LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWADI 1572
+Y D+TAAI ++ NP+ H R KHI++ H +R+ + G L L V T+ Q ADI
Sbjct: 1368 SPPVPILYSDSTAAIYIATNPVFHERTKHIKLDCHTVRERLDNGELKLLHVRTEDQVADI 1427
Query: 1573 FTKPLAEDRFNFILKNLNM 1591
TKPL +F + +++
Sbjct: 1428 LTKPLFPYQFEHLKSKMSI 1446
>At1g70010 hypothetical protein
Length = 1315
Score = 589 bits (1518), Expect = e-168
Identities = 346/1002 (34%), Positives = 534/1002 (52%), Gaps = 35/1002 (3%)
Query: 618 TGTICVDSSPCIDNVLLVDGLTHNLLSISQLADK-GYDVIFNQKSCRAVSQIDGSVLFNS 676
+G++ + +++VL + NLLS+S L G + F++ SC ++
Sbjct: 314 SGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMG 373
Query: 677 KRKNNIYKIRLSELEAQNVKCLLSVDE--EQWVWHRRLGHASMRKISQLSKLNLVRGLPN 734
K+ N+Y + L L ++V +WH+RLGH S++K+ +S L P
Sbjct: 374 KQVANLYIVDLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSL---LSFPK 430
Query: 735 LKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIV 794
K +D C C K +PF + N S SRP +L+HID +GP +++ G RY + IV
Sbjct: 431 QKNNTDFHCRVCHISKQKHLPFVSHNNKS-SRPFDLIHIDTWGPFSVQTHDGYRYFLTIV 489
Query: 795 DDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSY 854
DDYSR TWV L K + V TF+ V+N+ I VRSD+ E F + S
Sbjct: 490 DDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FTQFYHSK 546
Query: 855 GIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVR 914
GI SCP TPQQN VVERK++ + +AR++ ++ + +W + + TA Y+ NR+
Sbjct: 547 GIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINRLPAP 606
Query: 915 PILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFR 974
+ +K P+E+ P + FGC+CY + HKF ++ C +GY KG++
Sbjct: 607 ILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGFKGYK 666
Query: 975 FYNTDAKTIEESIHVRFDDKL----DSDQSKLVEKF-ADLS------------INVSDKG 1017
+ + +I S HV F ++L SD S+ + F DL+ +N SD
Sbjct: 667 LLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHVNPSDSS 726
Query: 1018 KAPE---EVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSE 1074
+ E P + PE S+ + K + + + ++ E + S R ++
Sbjct: 727 SSVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYCHSVVSSTPHEIRKFLSYDRIND 786
Query: 1075 ETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKW 1134
L L L EP + EA + + W AM E + W + P IG +W
Sbjct: 787 PYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEGTHTWEVCSLPADKRCIGCRW 846
Query: 1135 VFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLH 1194
+F+ K N G V R KARLVAQGY+Q+EGIDY ETF+PVA+L +++LL+ + + L
Sbjct: 847 IFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVAKLNSVKLLLGVAARFKLSLT 906
Query: 1195 QMDVKSAFLNGYISEEVYVHQPPGFE----DEKKPDHVFKLKKSLYGLKQAPRAWYERLS 1250
Q+D+ +AFLNG + EE+Y+ P G+ D P+ V +LKKSLYGLKQA R WY + S
Sbjct: 907 QLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCRLKKSLYGLKQASRQWYLKFS 966
Query: 1251 SFLLENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMS 1310
S LL F++ D T F K L V +Y+DDII S N + M++ F++
Sbjct: 967 STLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIASNNDAAVDILKSQMKSFFKLR 1026
Query: 1311 MMGELKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSG 1370
+GELKYF+G+++ ++ +G +I Q KY +LL + L + PM P+ + +
Sbjct: 1027 DLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGCKPSSIPMDPSMVFAHDSGGD 1086
Query: 1371 KVCQKLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLG 1430
V YR +IG L+YL +RPDI F+V+ A+F PR+ HL AV +IL+Y+KGT G
Sbjct: 1087 FVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRKAHLQAVYKILQYIKGTIGQG 1146
Query: 1431 LMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEY 1490
L Y TSE +L Y +ADY R R+STSG C FLG +L+ W S++Q ++ S+AEAEY
Sbjct: 1147 LFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSLICWKSRKQDVVSKSSAEAEY 1206
Query: 1491 ISAAICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFI 1549
S ++ + +++W+ + L++ Q+ L ++CDN AAI ++ N + H R KHIE H +
Sbjct: 1207 RSLSVATDELVWLTNFLKELQVPLSKPTLLFCDNEAAIHIANNHVFHERTKHIESDCHSV 1266
Query: 1550 RDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1591
R+ + KG+ L ++T+ Q AD FTKPL F+ ++ + +
Sbjct: 1267 RERLLKGLFELYHINTELQIADPFTKPLYPSHFHRLISKMGL 1308
>At1g31210 putative reverse transcriptase
Length = 1415
Score = 581 bits (1497), Expect = e-165
Identities = 352/1057 (33%), Positives = 556/1057 (52%), Gaps = 47/1057 (4%)
Query: 575 QSWYLDSGCSRHMTGEKRMFRELKLKPGGE-VGFGGNEKGKIVGTGTICVDSSPC---ID 630
+ W+ DS + H+T + G + V G I TG+ + SS ++
Sbjct: 320 KEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLN 379
Query: 631 NVLLVDGLTHNLLSISQLADK-GYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSE 689
VL+V + +LLS+S+L D V F+ + V+ R+N +Y + E
Sbjct: 380 EVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYVLENQE 439
Query: 690 LEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKG 749
A + EE VWH RLGHA+ + + L ++ K + +CE CQ G
Sbjct: 440 FVALYSNRQCAATEE--VWHHRLGHANSKALQHLQNSKAIQ---INKSRTSPVCEPCQMG 494
Query: 750 KFTKVPFKAKNVVSTSR---PLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFL 806
K +++PF ++S SR PL+ +H DL+GP + S G +Y + VDDYSR++W L
Sbjct: 495 KSSRLPF----LISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPL 550
Query: 807 TRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTP 866
K E VF +F V+N+ +I +SD GGEF ++K ++ +GI H SCP TP
Sbjct: 551 HNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTP 610
Query: 867 QQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWK 926
QQNG+ ERK+R L E+ +ML + + FW E+ TA YI NR+ + N +PYE
Sbjct: 611 QQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYEALF 670
Query: 927 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFR-FYNTDAK---- 981
KP+ S FG CY +KFD +S +C+ LGY+ + KG+R FY K
Sbjct: 671 GEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKVYIS 730
Query: 982 --TIEESIHVRFDDKLDS----DQSKLVEKFADLSINVSDKGKAPEEVEPEEDEPEEEAG 1035
I + F +K S + L++ + I+ AP ++ + + AG
Sbjct: 731 RNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKPIDLNTYAG 790
Query: 1036 PSNSQTLKKSRITA----------------AHPKELILGNKDEPVRTKSAFRPSEETLLS 1079
++ L T+ A +E ++ + R+K+ +
Sbjct: 791 SQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQKPNTRYAL 850
Query: 1080 LKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNK 1139
+ ++ EPK++ A++ W A+ EE+N+ WSLV + + ++ +KWVF+ K
Sbjct: 851 ITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTK 910
Query: 1140 LNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVK 1199
L+ G + + KARLVA+G+ Q+EG+DY ETF+PV R IRL++ S + + Q+DV
Sbjct: 911 LHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVS 970
Query: 1200 SAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFV 1259
+AFL+G + E V+++QP GF D +KP HV +L K++YGLKQAPRAW++ S+FLL+ FV
Sbjct: 971 NAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFV 1030
Query: 1260 RGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFM 1319
K D +LF IL + +YVDDI+ ++QSL ++ + ++ F M +G +YF+
Sbjct: 1031 CSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKDLGPPRYFL 1090
Query: 1320 GIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRG 1379
GIQ++ G ++HQ+ Y ++L++ M + TP+ L+ +R
Sbjct: 1091 GIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQQ--LDNLNSELFAEPTYFRS 1148
Query: 1380 MIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEY 1439
+ G L YLT +RPDI F+V+ + P + +KRILRY+KGT +GL K+ S
Sbjct: 1149 LAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGLPIKRNSTL 1208
Query: 1440 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQ 1499
LS Y D+D+AG + R+ST+G C LGSNL+SW++KRQ T++ S+ EAEY + + +
Sbjct: 1209 TLSAYSDSDHAGCKNTRRSTTGFCILLGSNLISWSAKRQPTVSNSSTEAEYRALTYAARE 1268
Query: 1500 MLWMKHQLEDYQILE-SNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVL 1558
+ W+ L D I + +YCDN +A+ LS NP LH+R+KH + +H+IR+ V G++
Sbjct: 1269 ITWISFLLRDLGIPQYLPTQVYCDNLSAVYLSANPALHNRSKHFDTDYHYIREQVALGLI 1328
Query: 1559 LLKFVDTDHQWADIFTKPLAEDRFNFILKNLNMDFCP 1595
+ + Q AD+FTK L F + L + P
Sbjct: 1329 ETQHISATFQLADVFTKSLPRRAFVDLRSKLGVSGSP 1365
>At2g05390 putative retroelement pol polyprotein
Length = 1307
Score = 580 bits (1496), Expect = e-165
Identities = 355/1032 (34%), Positives = 549/1032 (52%), Gaps = 60/1032 (5%)
Query: 576 SWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSS----PCIDN 631
SWYLD+G S HMTG + F +L G+V FG + + I G G+I + + + +
Sbjct: 279 SWYLDNGASNHMTGNLQWFSKLNEMITGKVRFGDDSRIDIKGKGSIVLITKGGIRKTLTD 338
Query: 632 VLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKR-KNNIYKIRLSEL 690
V + L N++S+ Q + G DV + +G +L + R +N +YK+ +L
Sbjct: 339 VYFIPDLKSNIISLGQATEAGCDVRMKDDQL-TLHDREGCLLLRATRSRNRLYKV---DL 394
Query: 691 EAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKGK 750
+NVKCL + + + + LV G+ N+ + C +C GK
Sbjct: 395 NVENVKCL------------------QLEAATMVRKELVIGISNIPKEKET-CGSCLLGK 435
Query: 751 FTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKD 810
+ PF S+ LEL+H DL GP+ + KRY +V++DD++R+ W L K
Sbjct: 436 QARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLKEKS 495
Query: 811 ESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNG 870
E+ F F +V+ E +I R+D GGEF + +F+ GI + P TPQQNG
Sbjct: 496 EAFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTAPYTPQQNG 555
Query: 871 VVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKP 930
VVER+NRTL M R++L+ M + W EAV + YI NR+ R + N+TPYE++K KP
Sbjct: 556 VVERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEVFKQRKP 615
Query: 931 NISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN-TDAKTIEESIHV 989
N+ + FGC+ Y L K D +S + LG SK +R + T+ K I+ +
Sbjct: 616 NVEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKIIKWNNSD 675
Query: 990 RFDDKLDSDQSKLVEKFADLSINVSD------KGKAPEEVEPEEDEPE---------EEA 1034
+ S + +F + I SD G+ E EE E E EE
Sbjct: 676 SETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEGENEHNEQEQIDAEET 735
Query: 1035 GPSNSQ---TLKKSRITAAHPKELILGNKDEPVRTKSAFRPSEETLLSLKGLVSLIEPKS 1091
PS++ TL++S P L D+ V E+ LL++ EP
Sbjct: 736 QPSHATPLPTLRRSTRQVGKPNYL-----DDYVLMAEI--EGEQVLLAIND-----EPWD 783
Query: 1092 IDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKGDVVRNKA 1151
EA + K+W A +EE+ KN WSL+ P VIG KWVF+ K N G + + KA
Sbjct: 784 FKEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSINKYKA 843
Query: 1152 RLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1211
RLVA+GY Q+ GIDY E FA VAR+E IR++I+ + ++ +H +DVK+AFL+G + E+V
Sbjct: 844 RLVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELREDV 903
Query: 1212 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKT 1271
YV QP GF ++ V+KL K+LYGLKQAPRAW +L+ L E FV+ + +++ +
Sbjct: 904 YVTQPEGFTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYRRQ 963
Query: 1272 YKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTY 1331
+ +LIV IYVDD++ ++ L F + M +FEMS +G+L Y++GI+V G
Sbjct: 964 EEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIEVLHRKNGII 1023
Query: 1332 IHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRGMIGSLLYLTASR 1391
+ Q +Y +++++ M PM L K + + ++ YR MIG L Y+ +R
Sbjct: 1024 LRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIGCLRYIVHTR 1083
Query: 1392 PDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAG 1451
PD+ + V + +R+ PRE+H A+K++LRYLKGT + GL K+ + L GY D+ ++
Sbjct: 1084 PDLSYCVGVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLVGYSDSSHSA 1143
Query: 1452 DRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQL-EDY 1510
D + KST+G+ +L ++W S++Q +ALS+ EAE+++A + Q +W++ E
Sbjct: 1144 DLDDGKSTAGHIFYLHQCPITWCSQKQQVVALSSCEAEFMAATEAAKQAIWLQDLFAEVC 1203
Query: 1511 QILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWA 1570
+ I DN +AI+L+KN + H R+KHI ++HFIR+ V+ ++ + V Q A
Sbjct: 1204 GTTSEKVMIRVDNKSAIALTKNLVFHGRSKHIHRRYHFIRECVENNLVEVDHVPGVEQRA 1263
Query: 1571 DIFTKPLAEDRF 1582
DI TKPL +F
Sbjct: 1264 DILTKPLGRIKF 1275
>At1g37110
Length = 1356
Score = 547 bits (1410), Expect = e-155
Identities = 348/1087 (32%), Positives = 562/1087 (51%), Gaps = 65/1087 (5%)
Query: 553 ESGYLRTRLSMLQ-ISLIAPLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNE 611
E+G + +L + +S+ + W LDSGC+ HMT + F + K + G +
Sbjct: 283 EAGVITEKLVFSEALSVNEQMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDH 342
Query: 612 KGKIVGTGTICVDSS----PCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQ 667
+ G GTI +D+ ++NV V L NL+S L GY + R
Sbjct: 343 SVESQGQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFK- 401
Query: 668 IDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVDEEQW-VWHRRLGHASMRKISQLSKL 726
+ N +Y + S + ++ C D+ + +WH RLGH SM + L+
Sbjct: 402 -NNKTALRGSLSNGLYVLDGSTVMSE--LCNAETDKVKTALWHSRLGHMSMNNLKVLAGK 458
Query: 727 NLV--RGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFG-PVKIES 783
L+ + + L+F CE C GK KV F S L +H DL+G P S
Sbjct: 459 GLIDRKEINELEF-----CEHCVMGKSKKVSFNVGKHTSEDA-LSYVHADLWGSPNVTPS 512
Query: 784 IGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFE 843
I GK+Y + I+DD +R W+ FL KDE+ F + + V+N+ ++ +R+D+G EF
Sbjct: 513 ISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFC 572
Query: 844 NDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNT 903
N +F+S +GI +C TPQQNGV ER NRT+ E R +L ++G+ + FWAEA T
Sbjct: 573 NSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAAT 632
Query: 904 ACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLL 963
A Y+ NR I + P E+W N KP + FG + YV + +L ++ K
Sbjct: 633 AAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKLKP---RALKGFF 689
Query: 964 LGYSERSKGFRFYNTDAKTIEESIHVRFDDKL----------DSDQSKLVE--------- 1004
LGY +KG++ + + + S +V F + + D+D E
Sbjct: 690 LGYPAGTKGYKVWLLEEEKCVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQN 749
Query: 1005 KFADLSIN------VSDKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSRITAAH-PKELIL 1057
KFA+ S + SD E + + E E E +T K++ +T ++ +
Sbjct: 750 KFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVR 809
Query: 1058 GNKDEPVRTKSAFRPSEETLLSLKGLVSLI--EPKSIDEALQDKD---WILAMEEELNQF 1112
N + P R F +L + + I EP+S EA++ +D W +A +E++
Sbjct: 810 RNINPPTR----FTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSL 865
Query: 1113 SKNDVWSLVKKPESVLVIGTKWVFRNKLNEKG-DVVRNKARLVAQGYSQQEGIDYTETFA 1171
KN W LV KP+ +IG +W+F+ K G + R KARLVA+GY+Q+EG+DY E FA
Sbjct: 866 MKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFA 925
Query: 1172 PVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKL 1231
PV + +IR+L+S V+ ++ L QMDVK+ FL+G + EE+Y+ QP GF + + V +L
Sbjct: 926 PVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRL 985
Query: 1232 KKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTYKD-DILIVQIYVDDIIFGS 1290
KKSLYGLKQ+PR W +R F+ +F+R + D ++ K + D + + +YVDD++
Sbjct: 986 KKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAG 1045
Query: 1291 ANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPEGTYIHQSK--YTKELLKKFNML 1348
A+++ E + EFEM MG +GI + + +G + S+ Y +++L +FNM
Sbjct: 1046 ASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMS 1105
Query: 1349 ESTVAKTPM---HPTCILEKEYKSGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARF 1404
+ + P+ + +E + Y +GS++Y + +RPD+ +++ L +R+
Sbjct: 1106 GAKMTNAPVGAHFKLAAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRY 1165
Query: 1405 QSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQ 1464
S P H AVK ++RYLKG +L L++ K ++ ++GYCD++YA D R+S SG
Sbjct: 1166 MSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVF 1225
Query: 1465 FLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNT 1524
+G N VSW + Q +A+ST EAEYI+ A + + +W+K L+D + + + I+CD+
Sbjct: 1226 TIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQ 1285
Query: 1525 AAISLSKNPILHSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNF 1584
+AI LSKN + H R KHI+V+ ++IRD V+ G + + + T D TK + ++F
Sbjct: 1286 SAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKS 1345
Query: 1585 ILKNLNM 1591
L L +
Sbjct: 1346 ALGVLKL 1352
>At2g21460 putative retroelement pol polyprotein
Length = 1333
Score = 544 bits (1401), Expect = e-154
Identities = 349/1076 (32%), Positives = 557/1076 (51%), Gaps = 56/1076 (5%)
Query: 556 YLRTRLSMLQISLIAPLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKI 615
Y+ LS I L W +D+GCS HMT ++ F +L GG V G K+
Sbjct: 271 YVSEALSSTDIHL-----EDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKV 325
Query: 616 VGTGTICVDSSPC----IDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGS 671
G GTI V + + NV + + NLLS+ GY + ++ S
Sbjct: 326 RGIGTIRVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIA--GDS 383
Query: 672 VLFNSKRKNNIYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRG 731
VL +R +Y ++ + +++ + D+ +WHRRLGH S + + L K L
Sbjct: 384 VLLTVRRCYTLYLLQWRPVTEESLSVVKRQDDTI-LWHRRLGHMSQKNMDLLLKKGL--- 439
Query: 732 LPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIE-SIGGKRYG 790
L K + CE C GK ++ F T LE +H DL+G + S+G +Y
Sbjct: 440 LDKKKVSKLETCEDCIYGKAKRIGFNLAQH-DTREKLEYVHSDLWGAPSVPFSLGKCQYF 498
Query: 791 MVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESL 850
+ +DDY+R + FL KDE+ F + V+N+ RI +R+D+G EF N F+
Sbjct: 499 ISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEF 558
Query: 851 FDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNR 910
GI +C TPQQNGV ER NRTL E R+ML ++G+ K FWAEA +T + N+
Sbjct: 559 CSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINK 618
Query: 911 ISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERS 970
+ + P + W P SY FGC+ +V +T D K + ++ K +L+GY
Sbjct: 619 TPSSALNYEVPDKRWSGKSPIYSYLRRFGCIAFV-HTDDG--KLNPRAKKGILVGYPIGV 675
Query: 971 KGFRFYNTDAKTIEESIHVRFDDKL---DSDQSKLVEK---------FADLSIN----VS 1014
KG++ + + K S +V F + D QSK EK + DL ++ ++
Sbjct: 676 KGYKIWLLEEKKCVVSRNVIFQENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVIT 735
Query: 1015 DKGKAP--EEVEPEEDEPEEEAGPSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRP 1072
G P E P P S + I + +L+ +R F
Sbjct: 736 SGGDDPIVEAQSPFNPSPATTQTYSEGVNSETDIIQSPLSYQLVRDRDRRTIRAPVRFDD 795
Query: 1073 SE---ETLLSLKGLVSLIEPKSIDEALQDKDWI---LAMEEELNQFSKNDVWSLVKKPES 1126
+ E L + + IEP EA + +W LAM EE+ KN W++VK+P+
Sbjct: 796 EDYLAEALYTTEDSGE-IEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQH 854
Query: 1127 VLVIGTKWVFRNKLNEKG-DVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISF 1185
VIG++W+++ KL G + R KARLVA+GY+Q++GIDY E FAPV + +IR+L+S
Sbjct: 855 QKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSI 914
Query: 1186 SVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAW 1245
++ L Q+DVK+AFL+G + E++Y+ P G+E+ K D V L KSLYGLKQAP+ W
Sbjct: 915 VAQEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQW 974
Query: 1246 YERLSSFLLENEFVRGKVDTTLFCKTYKDDILI-VQIYVDDIIFGSANQSLCKEFSEMMQ 1304
E+ ++++ E F+R D+ + K D + + +YVDD++ + N+ + E +
Sbjct: 975 NEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELS 1034
Query: 1305 AEFEMSMMGELKYFMGIQVDQTPEGT--YIHQSKYTKELLKKFNMLESTVAKTPMHP--- 1359
F+M +G K +G+++ + E ++ Q+ Y ++L+ +NM ES TP+
Sbjct: 1035 QRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLK 1094
Query: 1360 --TCILEKEYKSGKVCQKL-YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTA 1415
+EK+ + + + Y +GS++Y + +RPD+ + V + +R+ S P H
Sbjct: 1095 MRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLG 1154
Query: 1416 VKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWAS 1475
VK +LRY+KG+ L YK++S++K+ GYCDAD+A + R+S +G LG + +SW S
Sbjct: 1155 VKWVLRYIKGSLGTKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKS 1214
Query: 1476 KRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPIL 1535
+Q +ALST EAEY+S + +WMK L+++ + ++ I+CD+ +AI+LSKN +
Sbjct: 1215 GQQRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVH 1274
Query: 1536 HSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1591
H R KHI+V++ +IRD + G + +DT+ ADIFTK + ++F L L +
Sbjct: 1275 HERTKHIDVRYQYIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNKFQAALTLLQV 1330
>At1g26990 polyprotein, putative
Length = 1436
Score = 535 bits (1379), Expect = e-152
Identities = 333/1044 (31%), Positives = 534/1044 (50%), Gaps = 71/1044 (6%)
Query: 566 ISLIAPLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDS 625
I + L ++W +DSG S H+T E+ ++ K V KI GTG I +
Sbjct: 410 IPIETELSLRAWVIDSGASHHVTHERNLYHTYKALDRTFVRLPNGHTVKIEGTGFIQLTD 469
Query: 626 SPCIDNVLLVDGLTHNLLSISQLADKGYD-VIFNQKSCRAVSQIDGSVLFNSKRKNNIYK 684
+ + NVL + NLLS+S L V F C + +L + N+Y
Sbjct: 470 ALSLHNVLFIPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYI 529
Query: 685 IRL-------SELEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKF 737
+ L S ++V SV E +WH+RLGH S KI LS + + LP K
Sbjct: 530 LNLDKSLVDVSSFPGKSV--CSSVKNESEMWHKRLGHPSFAKIDTLSDVLM---LPKQKI 584
Query: 738 ASDAL-CEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDD 796
D+ C C K +PFK+ N + + EL+HID +GP + ++ RY + IVDD
Sbjct: 585 NKDSSHCHVCHLSKQKHLPFKSVNHIR-EKAFELVHIDTWGPFSVPTVDSYRYFLTIVDD 643
Query: 797 YSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGI 856
+SR TW+ L +K + VF +F+ V+ + ++ VRSD+ E KF LF GI
Sbjct: 644 FSRATWIYLLKQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHEL---KFNELFAKEGI 700
Query: 857 AHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPI 916
D CP TP+QN VVERK++ L +AR ++ ++G+ +W + V TA ++ NR+ I
Sbjct: 701 KADHPCPETPEQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVI 760
Query: 917 LNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFY 976
N+TPYE KP+ S FGC+CY + KFD ++ C+ LGY KG++
Sbjct: 761 NNETPYERLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLL 820
Query: 977 NTDAKTIEESIHVRF-DDKLDSDQSKLVEKFADLSINVSDKGKAPEE----VEPEEDEPE 1031
+ + ++ S HV F +D S + + D ++ +E V+ D P
Sbjct: 821 DIETYSVSISRHVIFYEDIFPFASSNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDAPH 880
Query: 1032 --EEAG-----PSNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRP----------SE 1074
+E+ PS ++ ++ ++ + H ++ N + P TK++ P SE
Sbjct: 881 NHDESSSMIFVPSEPKSTRQRKLPS-HLQDFHCYN-NTPTTTKTSPYPLTNYISYSYLSE 938
Query: 1075 ETLLSLKGLVSLIEPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKW 1134
+ + + P+ EA DK W AM +E++ F + WS+ P + +G KW
Sbjct: 939 PFGAFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKW 998
Query: 1135 VFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLH 1194
+ K G + R+KARLVA+GY+QQEGID+ TF+PVA++ +++L+S + LH
Sbjct: 999 IITIKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLAPKMKWYLH 1058
Query: 1195 QMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLL 1254
Q+D+ +A LNG + EE+Y+ PPG+ + + G + +P A
Sbjct: 1059 QLDISNALLNGDLEEEIYMKLPPGYSE-------------IQGQEVSPNA---------- 1095
Query: 1255 ENEFVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGE 1314
+ D TLF K L+V +YVDDI+ S ++ E + + + F++ +GE
Sbjct: 1096 -----KCHGDHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFFQLRDLGE 1150
Query: 1315 LKYFMGIQVDQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQ 1374
K+F+GI++ + +G + Q KY +LL + + + PM P L K+ +
Sbjct: 1151 PKFFLGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSKDTGTLLEDG 1210
Query: 1375 KLYRGMIGSLLYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYK 1434
K YR ++G L YL +RPDI F+V A++ S P + HL A+ +ILRYLKGT GL Y
Sbjct: 1211 KQYRRILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGTIGQGLFYG 1270
Query: 1435 KTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAA 1494
+ + L G+ D+D+ R+ +G F+G++LVSW SK+Q +++S+AEAEY + +
Sbjct: 1271 ADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVSWRSKKQDVVSMSSAEAEYRAMS 1330
Query: 1495 ICSTQMLWMKHQLEDYQI-LESNIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFIRDYV 1553
+ + +++W+ + L ++I +YCDN AA+ ++ N + H R KHIE H +R+ +
Sbjct: 1331 VATKELIWLGYILTAFKIPFTHPAYLYCDNEAALHIANNSVFHERTKHIENDCHKVRECI 1390
Query: 1554 QKGVLLLKFVDTDHQWADIFTKPL 1577
+ G+L FV TD+Q AD TKPL
Sbjct: 1391 EAGILKTIFVRTDNQLADTLTKPL 1414
>At5g35820 copia-like retrotransposable element
Length = 1342
Score = 525 bits (1352), Expect = e-149
Identities = 337/1071 (31%), Positives = 563/1071 (52%), Gaps = 85/1071 (7%)
Query: 570 APLKHQSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVD----S 625
A + +W LD+GCS HMT K + K G+V G + ++ G G + + S
Sbjct: 305 AEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGS 364
Query: 626 SPCIDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI 685
+ + +V + ++ NL+S+ L DKG ++K + + D +VL K+++ +Y +
Sbjct: 365 TILLTDVRYIPEMSKNLISLGTLEDKGC-WFESKKGILTIFKNDLTVL-TGKKESTLYFL 422
Query: 686 RLSELEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQL-SKLNLVRGLPNLKFASDALCE 744
+ + L A + +E +WH RLGH + + L SK +L + + + F +
Sbjct: 423 QGTTL-AGEANVIDKEKDETSLWHSRLGHIGAKGLQVLVSKGHLDKNIM-ISFGA----- 475
Query: 745 ACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIE-SIGGKRYGMVIVDDYSRWTWV 803
AK+V T L+ +H DL+G + SIG +Y + +DD++R TW+
Sbjct: 476 -------------AKHV--TKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWI 520
Query: 804 KFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCP 863
F+ KDE+ F + Q++N++ ++ + +D+G EF N +F+S G+ +C
Sbjct: 521 YFIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCA 580
Query: 864 RTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYE 923
TPQQNGV ER NRT+ R ML E+G+ K FWAEA +TA ++ N+ I P E
Sbjct: 581 YTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEE 640
Query: 924 LWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTI 983
W P+ FG V Y+ + + +L+ ++ K + LGY + K F+ + + +
Sbjct: 641 KWTGHPPDYKILKKFGSVAYIHSDQGKLNP---RAKKGIFLGYPDGVKRFKVWLLEDRKC 697
Query: 984 EESIHVRFDDKLDSDQSKLVEKFADLSIN-VSDKGKAPEEVE---------PEEDEPEEE 1033
S + F + + + +L N +S++ K EVE +DE + E
Sbjct: 698 VVSRDIVFQEN---------QMYKELQKNDMSEEDKQLTEVERTLIELKNLSADDENQSE 748
Query: 1034 AGPSNSQTLKKSRITAAHPKELILGNKDEP---------------VRTKSAFRPSEETLL 1078
G +++Q + +A+ K++ + D+ +R F +++L+
Sbjct: 749 GGDNSNQEQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLV 808
Query: 1079 SLKGLVS----LIEPKSIDEALQDKD---WILAMEEELNQFSKNDVWSLVKKPESVLVIG 1131
++ + EP++ +EA++ + W A EE++ KND W ++ KPE VIG
Sbjct: 809 GFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIG 868
Query: 1132 TKWVFRNKLNEKG-DVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHN 1190
KW+F+ K G + R KARLVA+G+SQ+EGIDY E F+PV + +IR L+S V +
Sbjct: 869 CKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFD 928
Query: 1191 IVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLS 1250
+ L Q+DVK+AFL+G + E + + QP G+EDE + V LKKSLYGLKQ+PR W +R
Sbjct: 929 MELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFD 988
Query: 1251 SFLLENEFVRGKVDTTLFCKTYKDDILI-VQIYVDDIIFGSANQSLCKEFSEMMQAEFEM 1309
SF++ + + R K + ++ + D I + +YVDD++ S N+ ++ E + EFEM
Sbjct: 989 SFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEM 1048
Query: 1310 SMMGELKYFMGIQVDQTPEGTYIH--QSKYTKELLKKFNMLESTVAKTPMHPTCIL---- 1363
+G + +G+++ + E + QS+Y +L+ F M +S V++TP+ L
Sbjct: 1049 KDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAAN 1108
Query: 1364 EKEYKSGKVCQKL--YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRIL 1420
EK KL Y IGS++Y + SRPD+ + V + +RF S P + H AVK ++
Sbjct: 1109 EKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVM 1168
Query: 1421 RYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQST 1480
RY+KGT + L +KK ++++ GYCD+DYA D R+S +G G N +SW S Q
Sbjct: 1169 RYMKGTQDTCLRFKKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTISWKSGLQRV 1228
Query: 1481 IALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAK 1540
+ALST EAEY++ A + +W++ + + + + CD+ +AI+LSKN + H R K
Sbjct: 1229 VALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALSKNSVHHERTK 1288
Query: 1541 HIEVKHHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1591
HI+V++HFIR+ + G + + + T ADIFTK + + LK L +
Sbjct: 1289 HIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLLRV 1339
>At4g03810 putative retrotransposon protein
Length = 964
Score = 491 bits (1264), Expect = e-138
Identities = 318/992 (32%), Positives = 506/992 (50%), Gaps = 86/992 (8%)
Query: 629 IDNVLLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNN------- 681
+ N V + N++S+S L +G+ K C S + + S +N
Sbjct: 5 LKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCC---SFDRDDMFYGSAPLDNGLHVLNQ 61
Query: 682 ---IYKIRLSELEAQNVKCLLSVDEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFA 738
IY IR + ++ ++ ++WH RLGH + + I +L L L + +
Sbjct: 62 SMPIYNIRTKKFKSNDLN-------PTFLWHCRLGHINEKHIQKLHSDGL---LNSFDYE 111
Query: 739 SDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKIESIGGKRYGMVIVDDYS 798
S CE+C GK TK PF + S L L+H D+ GP+ + G +Y + DD+S
Sbjct: 112 SYETCESCLLGKMTKAPFTGHSE-RASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFS 170
Query: 799 RWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAH 858
R+ +V + K +S F F +VQN+ I +RSD GGE+ + F GI
Sbjct: 171 RYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDHLRECGIVS 230
Query: 859 DFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVRPILN 918
+ P TPQ NGV ER+NRTL +M R+M+ T + FW A+ T+ ++ NR + +
Sbjct: 231 QLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNRCPSKSV-E 289
Query: 919 KTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN- 977
KTPYE+W PN+S+ +GC Y + K KS KC +GY + +KG+ FY+
Sbjct: 290 KTPYEIWTGKVPNLSFLKIWGCESYA--KRLITDKLGPKSDKCYFVGYPKETKGYYFYHP 347
Query: 978 TDAKTIEESIHVRFDDKLDSDQSKLVEKFADLSINVSDKGKAPEEVEPEE-DEPEEEAGP 1036
TD K +V A L KG + +V EE EP+ +
Sbjct: 348 TDNKVF------------------VVRNGAFLEREFLSKGTSGSKVLLEEVREPQGDVPT 389
Query: 1037 SNSQTLKKSRITAAHPKELILGNKDEPVRTKSAFRPSEETLLS------------LKGLV 1084
S + +L L EP+ + R SE + ++
Sbjct: 390 SQEE------------HQLDLRRVVEPILVEPEVRRSERSRHEPDRFRDWVMDDHALFMI 437
Query: 1085 SLIEPKSIDEALQDKD---WILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLN 1141
EP S +EAL D W+ A + E+ S+N VW+LV P+ V I KW+F+ K++
Sbjct: 438 ESDEPTSYEEALMGPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKID 497
Query: 1142 EKGDVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSA 1201
G++ KA LVA+GY Q GIDY ET++PVA L++IR+L++ + +++ + QMDVK+A
Sbjct: 498 MDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTA 557
Query: 1202 FLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRG 1261
FLNG + E VY+ QP GF + V KL +S+YGLKQA R+W R + + E +F+R
Sbjct: 558 FLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRN 617
Query: 1262 KVDTTLFCKTYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGI 1321
+ + ++ KT + + +YVDDI+ + L + + + F M MGE Y +GI
Sbjct: 618 EEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGI 677
Query: 1322 QV--DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEY------KSGKVC 1373
++ D+ + + Q Y ++L +FNM +S PM L K + ++
Sbjct: 678 RIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMS 737
Query: 1374 QKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLM 1432
+ Y IGS++Y + +RPD+ ++ + +R+QSDP E+H V+ I +YL+ T + L+
Sbjct: 738 KIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYLRRTKDKFLV 797
Query: 1433 YKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYIS 1492
Y + E +SGY DA + D+ + +S SG L VSW S +QST+A ST EAEYI+
Sbjct: 798 YGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNGGAVSWKSTKQSTVADSTTEAEYIA 857
Query: 1493 AAICSTQMLWMKHQLEDYQILES---NIPIYCDNTAAISLSKNPILHSRAKHIEVKHHFI 1549
A+ + +++W++ + + ++ S I +YCDN AI+ +K P H ++KHI+ ++H I
Sbjct: 858 ASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNGAIAQAKEPKSHQKSKHIQRRYHLI 917
Query: 1550 RDYVQKGVLLLKFVDTDHQWADIFTKPLAEDR 1581
R+ + +G + + V TD AD FTKPL + +
Sbjct: 918 REIIDRGDVKISRVSTDANVADHFTKPLPQPK 949
>At2g19840 copia-like retroelement pol polyprotein
Length = 1137
Score = 473 bits (1218), Expect = e-133
Identities = 293/838 (34%), Positives = 450/838 (52%), Gaps = 63/838 (7%)
Query: 795 DDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSY 854
+D+SR WV FL KDE+ F+ + V+ + ++ +R+D+G EF N KF+ +
Sbjct: 319 NDWSRKVWVYFLKTKDEAFASFTEWKKMVETQSERKLKHLRTDNGLEFCNHKFDEVCKKE 378
Query: 855 GIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWAEAVNTACYIQNRISVR 914
GI +C TPQQNGV ER NRT+ R+ML E+G+ K FWA+A +TA Y+ NR
Sbjct: 379 GIVRHRTCTYTPQQNGVAERLNRTIMNKVRSMLSESGLDKKFWAKAASTAVYLINRSPSS 438
Query: 915 PILNKTPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFR 974
I NK P ELW + PN S FGCV YV + + +L D ++ K + +GY KGFR
Sbjct: 439 SIENKIPEELWTSAVPNFSGLKRFGCVVYVYSQEGKL---DPRAKKGVFVGYPNGVKGFR 495
Query: 975 FYNTDAKTIEESIHVRF------DDKLDSDQSKLVEKFADLSINVSDKGKAPEEVEPEED 1028
+ + + S +V F D L+ S + F + + A +ED
Sbjct: 496 VWMIEEERCSISRNVVFREDVMYKDILNQSTSGMSFDFPLATNRIPSFECAGNR---KED 552
Query: 1029 EPEEEAGPSNSQTLKKSRITAAHP--------KELILGNKDEPVRTKSA------FRPSE 1074
E + G S+ T + S + + +D+P R + +E
Sbjct: 553 EISVQGGVSDDDTKQSSEESPISTGSSGQNSGQRTYQIARDKPKRQTKIPDKLRDYELNE 612
Query: 1075 ETLLSLKGLVSLI-------EPKSIDEALQDKD---WILAMEEELNQFSKNDVWSLVKKP 1124
E L + G +I EP +ALQD D W+ A++EE+ KN+ W LV +
Sbjct: 613 EVLDEIAGYAYMITEDGGNPEPNDYQKALQDSDYKMWLKAVDEEIESLLKNNTWVLVNRD 672
Query: 1125 ESVLVIGTKWVFRNKLNEKG-DVVRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLI 1183
+ IG KWVF+ K G + R KARLV +GYSQ+EGIDY E F+PV + +IRLL+
Sbjct: 673 QFQKPIGCKWVFKRKSGIVGVEKPRFKARLVVKGYSQKEGIDYQEIFSPVVKHVSIRLLL 732
Query: 1184 SFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPR 1243
S + ++ L QMDVK+AFL+GY+ E +Y+ QP G+ ++ PD V LK+SLYGL+Q+PR
Sbjct: 733 SMVTHCDMELQQMDVKTAFLHGYLDETIYIEQPEGYVHKRYPDKVCLLKRSLYGLRQSPR 792
Query: 1244 AWYERLSSFLLENEFVRGKVDTTLFCKTYKD-DILIVQIYVDDIIFGSANQSLCKEFSEM 1302
W R + F+ + + R K D+ ++ K + + + + +YVDDI+ S ++ + +
Sbjct: 793 QWNNRFNEFMQKIGYERSKYDSCVYFKELQSGEYIYLLLYVDDILIASRDKRTVCDLKAL 852
Query: 1303 MQAEFEMSMMGELKYFMGIQV--DQTPEGTYIHQSKYTKELLKKFNMLESTVAKTPMHPT 1360
+ +EFEM +G+ K +G+++ D+ I Q Y ++L F M ++ TPM
Sbjct: 853 LNSEFEMKDLGDAKKILGMEIVRDRKAGTMSISQEGYLLKVLGNFGMDQAKPVFTPMGAH 912
Query: 1361 CIL-----EKEYKSGKVCQKL-YRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHL 1413
L E+ + +V + + Y+ +GSL+Y + +RPD+ SV L RF S P + H
Sbjct: 913 FKLKPATDEEVMRQSEVMRAVPYQSAVGSLMYSMIGTRPDLAHSVGLVCRFMSKPLKEHW 972
Query: 1414 TAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSW 1473
AVK ILRY++G+ + L YK E L GYCD+DYA D+ R+STSG
Sbjct: 973 QAVKWILRYIRGSIDRKLCYKNEGELILEGYCDSDYAADKEGRRSTSG------------ 1020
Query: 1474 ASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNIPIYCDNTAAISLSKNP 1533
+ALS+ EAEY++ + + +W+K + + ++ + I+CD+ +AI+L+KN
Sbjct: 1021 ----VKVVALSSTEAEYMALTDGAKEAIWLKGHVSELGFVQKTVNIHCDSQSAIALAKNA 1076
Query: 1534 ILHSRAKHIEVKHHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNLNM 1591
+ H R KHI+VK+HFIRD V G + + +DT+ ADIFTK L +F L+ L +
Sbjct: 1077 VYHERTKHIDVKYHFIRDLVNNGEVQVLKIDTEDNPADIFTKVLPVSKFQDALELLRV 1134
Score = 34.7 bits (78), Expect = 0.46
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 575 QSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTI 621
+ W +D+GCS HMT K + G+V N ++ G G +
Sbjct: 264 EEWIMDTGCSFHMTPRKEYLMDFVEAKSGKVRMANNSFSEVKGIGKV 310
>At2g15700 copia-like retroelement pol polyprotein
Length = 1166
Score = 444 bits (1142), Expect = e-124
Identities = 292/878 (33%), Positives = 453/878 (51%), Gaps = 108/878 (12%)
Query: 711 RLGHASMRKISQLSKLNLVRG--LPNLKFASDALCEACQKGKFTKVPFK-AKNVVSTSRP 767
RLGH S++ ++ L + + G + L+F CE+C GK K F AK+
Sbjct: 344 RLGHMSLKNMNVLVEEGYLSGKEVDKLEF-----CESCVLGKSHKQSFPTAKHTTK---- 394
Query: 768 LELLHIDLFGPVKIESIGGKRYGMVIVDDYSRWTWVKFLTRKDESHVVFSTFIAQVQNEK 827
ES+GG RY + +DD+S+ WV FL KDE++ F + V+N+
Sbjct: 395 --------------ESLGGCRYFVSFIDDFSKKVWVYFLKTKDEAYHKFREWKQAVENQT 440
Query: 828 ACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTML 887
+I +R+D+G EF N +F++L GI +C TPQQNGV ER N+T+ ++ R+ML
Sbjct: 441 GKKIKYLRTDNGLEFYNTQFDNLCKEDGIKRHRTCTYTPQQNGVSERMNKTIMDIVRSML 500
Query: 888 QETGMAKHFWAEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNT 947
ETGM++ FWAEA +TA Y+ NR I K P E+W KP++S+ FGC YV T
Sbjct: 501 AETGMSQEFWAEATSTAVYLINRTPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVT 560
Query: 948 KDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFD------------DKL 995
+D K ++ K + +GY KG+R + S +V F+ D+
Sbjct: 561 QD---KTSPRAVKGVFMGYPCGIKGYRVWLPKEGKCTTSRNVVFNETELYKDTLSSADER 617
Query: 996 DSDQSKLVEKFADLSINVS---DKGKAPEEVEPEEDEPEEEAGPSNSQTLKKSR-ITAAH 1051
+ K +K VS D + P + D+ + G ++S + + S + +
Sbjct: 618 KEEAEKEYKKLKKARKRVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESE 677
Query: 1052 PKELILGNKDEP----------------VRTKSAFRPSEETLLSLKGLVSLIE--PKSID 1093
E ++G+++E +R S F + +L L E PKS +
Sbjct: 678 MNEEVVGSENEQSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYE 737
Query: 1094 EALQD---KDWILAMEEELNQFSKNDVWSLVKKPESVLVIGTKWVFRNKLNEKG-DVVRN 1149
EAL+ K W AM+EE++ K+ W L++KPE +IG KW+F+ K G + R
Sbjct: 738 EALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRY 797
Query: 1150 KARLVAQGYSQQEGIDYTETFAPVARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISE 1209
KARLVA+G+SQQEGIDY E F+ V + +IRL++S VN + L QMDVK+AFL+G + E
Sbjct: 798 KARLVAKGFSQQEGIDYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLHGNLEE 857
Query: 1210 EVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFC 1269
+ + QP GF E + V L+KSLYGLKQ+PR W +R +F+ + +F R D ++
Sbjct: 858 RILMSQPEGFIQEGNENKVCLLRKSLYGLKQSPRLWNQRFDAFMKDQKFERSCYDPCVYM 917
Query: 1270 K-TYKDDILIVQIYVDDIIFGSANQSLCKEFSEMMQAEFEMSMMGELKYFMGIQVDQTPE 1328
+ T D + + +YVDD++ S N M+++ ELK + + TP
Sbjct: 918 RDTQTDKAIYLLLYVDDMLIASGN----------------MAIIQELKNKLNSRPVITPT 961
Query: 1329 GTYIHQSKYTKELLKKFNMLESTVAKTPMHPTCILEKEYKSGKVCQKLYRGMIGSLLY-L 1387
+ KF L EK+ ++ + + Y ++GSL+Y +
Sbjct: 962 AAHF-----------KFRSLSEE------------EKKTEAVHMERIPYANVVGSLMYAM 998
Query: 1388 TASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKGTTNLGLMYKKTSEYKLSGYCDA 1447
SRPD+ F V +RF S P H +AVK +LRYLKG L++KK S++ + G+ D+
Sbjct: 999 VGSRPDLAFVVGFISRFMSSPGREHWSAVKWVLRYLKGAYTQNLIFKKDSKFCIEGFSDS 1058
Query: 1448 DYAGDRTERKSTSGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQL 1507
DYA D R+S +G +G N +SW S QS +ALST EAEY++ + +W+K
Sbjct: 1059 DYATDLDRRRSVTGYVFKVGGNTISWKSSLQSVVALSTTEAEYMALTEAVKEAIWLKGLC 1118
Query: 1508 EDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVK 1545
+ + N+ ++CD+ +A++L+KN + H R +HI+ K
Sbjct: 1119 SELGFKQDNVMVHCDSQSALALAKNSVHHERTEHIDTK 1156
Score = 38.1 bits (87), Expect = 0.041
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 575 QSWYLDSGCSRHMTGEKRMFRELKLKPGGEVGFGGNEKGKIVGTGTICVDSSPCIDNVLL 634
+ W +DSGCS H+T +K +L+ GG+V G ++ G G I + + +L
Sbjct: 282 EEWVMDSGCSFHITLDKDSLFDLQEFDGGKVLMGNMTHSEVKGIGKIKILNPDDYVVILT 341
Query: 635 VDGLTH-NLLSISQLADKGY 653
L H +L +++ L ++GY
Sbjct: 342 NVRLGHMSLKNMNVLVEEGY 361
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.332 0.142 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,853,361
Number of Sequences: 26719
Number of extensions: 1365110
Number of successful extensions: 7099
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 6300
Number of HSP's gapped (non-prelim): 339
length of query: 1596
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1483
effective length of database: 8,299,349
effective search space: 12307934567
effective search space used: 12307934567
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0128.9