BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0127a.6
(105 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64890 unknown protein 104 6e-24
At1g04570 unknown protein 95 7e-21
At5g54860 unknown protein 64 2e-11
At2g32040 unknown protein 54 1e-08
At5g25050 putative membrane protein 41 9e-05
At2g33280 hypothetical protein 40 1e-04
At1g79710 hypothetical protein 38 7e-04
At5g10820 unknown protein 36 0.003
At5g25040 putative membrane protein 36 0.004
At5g09800 putative protein 28 0.58
At5g64660 unknown protein 25 4.9
At1g53900 25 8.4
At1g53880 25 8.4
>At1g64890 unknown protein
Length = 442
Score = 104 bits (260), Expect = 6e-24
Identities = 48/68 (70%), Positives = 55/68 (80%)
Query: 2 GYWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQH 61
G++VQGFR FPWL +FFL + L V PS LQLLQNSANLPMV P+Y VVSDSVY GQH
Sbjct: 26 GFFVQGFRGFPWLGANFFLTEQLRVNPSVLQLLQNSANLPMVAKPIYGVVSDSVYFFGQH 85
Query: 62 RVPYIAIG 69
R+PYIA+G
Sbjct: 86 RIPYIAVG 93
Score = 24.6 bits (52), Expect = 8.4
Identities = 10/42 (23%), Positives = 24/42 (56%)
Query: 13 WLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDS 54
WLA++F + +++ ++ LL ++ +V A+V++S
Sbjct: 101 WLAIAFLSRSNVSILALSIYLLLSNLGASLVEVANDAIVAES 142
>At1g04570 unknown protein
Length = 542
Score = 94.7 bits (234), Expect = 7e-21
Identities = 44/69 (63%), Positives = 52/69 (74%)
Query: 1 LGYWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQ 60
LGYWVQG RCFPWLA++F + L + PSTLQL+Q S +LPMV PLY V+SD +YI
Sbjct: 93 LGYWVQGSRCFPWLALNFHMVHSLALQPSTLQLVQYSCSLPMVAKPLYGVLSDVLYIGSG 152
Query: 61 HRVPYIAIG 69
RVPYIAIG
Sbjct: 153 RRVPYIAIG 161
>At5g54860 unknown protein
Length = 491
Score = 63.5 bits (153), Expect = 2e-11
Identities = 30/66 (45%), Positives = 41/66 (61%)
Query: 3 YWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHR 62
Y+ QGFR F W AVS+ LKD L ++PS Q + + A P PLY ++SD + I G+ R
Sbjct: 24 YFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWSIKPLYGIISDCIPIGGKKR 83
Query: 63 VPYIAI 68
PY+ I
Sbjct: 84 TPYLVI 89
>At2g32040 unknown protein
Length = 560
Score = 53.9 bits (128), Expect = 1e-08
Identities = 27/68 (39%), Positives = 41/68 (59%)
Query: 3 YWVQGFRCFPWLAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHR 62
Y+VQG LAVSF+LKD L++ P+ ++ ++LP + PLY +SDSV + G R
Sbjct: 134 YFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVPLFGYRR 193
Query: 63 VPYIAIGG 70
Y+ + G
Sbjct: 194 RSYLVLSG 201
>At5g25050 putative membrane protein
Length = 499
Score = 41.2 bits (95), Expect = 9e-05
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 14 LAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPYIAIGG 70
+A +++KD V PS Q L +P + PL+ +++D + I G HR PY + G
Sbjct: 66 VATEYYMKDVQKVQPSESQALTAITKIPWIIKPLWGILTDVLPIFGFHRRPYFILAG 122
>At2g33280 hypothetical protein
Length = 408
Score = 40.4 bits (93), Expect = 1e-04
Identities = 17/28 (60%), Positives = 21/28 (74%)
Query: 42 MVGTPLYAVVSDSVYISGQHRVPYIAIG 69
MV PLY V+SD +YI G RVPYI++G
Sbjct: 1 MVAKPLYGVLSDVLYIGGARRVPYISVG 28
>At1g79710 hypothetical protein
Length = 497
Score = 38.1 bits (87), Expect = 7e-04
Identities = 17/69 (24%), Positives = 36/69 (51%), Gaps = 3/69 (4%)
Query: 14 LAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPYIAIGGN** 73
++ ++ KD + PS Q+ +P + PL+ +++D V + G R PY + G
Sbjct: 70 VSTQYYFKDEQKIQPSQAQIYVGLIQIPWIIKPLWGLLTDVVPVLGYRRRPYFILAG--- 126
Query: 74 FIVIVCMIM 82
F+ ++ M++
Sbjct: 127 FLAMISMMV 135
>At5g10820 unknown protein
Length = 503
Score = 36.2 bits (82), Expect = 0.003
Identities = 17/57 (29%), Positives = 27/57 (46%)
Query: 14 LAVSFFLKDGLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPYIAIGG 70
+ ++ KD V PS +QL +P V P++ + +D I G R PY + G
Sbjct: 78 VVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKPYFVVSG 134
>At5g25040 putative membrane protein
Length = 492
Score = 35.8 bits (81), Expect = 0.004
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 14 LAVSFFLKDGLNVAPSTLQLLQNSANLP-MVGTPLYAVVSDSVYISGQHRVPYIAIGG 70
+A +++KD V PS Q L + ++ PL+ +++D + I G HR PY + G
Sbjct: 66 VATDYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHRRPYFILAG 123
>At5g09800 putative protein
Length = 409
Score = 28.5 bits (62), Expect = 0.58
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 14 LAVSFFLKDGLNVAPSTLQLLQNSANLP 41
+++ +L DG N P+T+Q+LQN +P
Sbjct: 39 VSIQRWLDDGNNTCPATMQILQNKEFVP 66
>At5g64660 unknown protein
Length = 420
Score = 25.4 bits (54), Expect = 4.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 15 AVSFFLKDGLNVAPSTLQLLQNSANLP 41
++ +L G N P+T+Q+LQN +P
Sbjct: 39 SIQRWLDGGNNTCPATMQILQNKDFIP 65
>At1g53900
Length = 637
Score = 24.6 bits (52), Expect = 8.4
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 23 GLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPY 65
G N + QL +N LP + Y VV S + G H+ Y
Sbjct: 96 GYNSTGTRFQLRKNFKILPKGSSSSYKVVMGSRIVDGDHQSCY 138
>At1g53880
Length = 637
Score = 24.6 bits (52), Expect = 8.4
Identities = 14/43 (32%), Positives = 19/43 (43%)
Query: 23 GLNVAPSTLQLLQNSANLPMVGTPLYAVVSDSVYISGQHRVPY 65
G N + QL +N LP + Y VV S + G H+ Y
Sbjct: 96 GYNSTGTRFQLRKNFKILPKGSSSSYKVVMGSRIVDGDHQSCY 138
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.355 0.161 0.564
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,955,184
Number of Sequences: 26719
Number of extensions: 63332
Number of successful extensions: 363
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 14
length of query: 105
length of database: 11,318,596
effective HSP length: 81
effective length of query: 24
effective length of database: 9,154,357
effective search space: 219704568
effective search space used: 219704568
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0127a.6