BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118c.6
(278 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31080 putative non-LTR retroelement reverse transcriptase 96 3e-20
At2g27870 putative non-LTR retroelement reverse transcriptase 93 2e-19
At2g22350 putative non-LTR retroelement reverse transcriptase 92 4e-19
At2g07730 putative non-LTR retroelement reverse transcriptase 85 4e-17
At4g08830 putative protein 79 2e-15
At3g32110 non-LTR reverse transcriptase, putative 78 5e-15
At3g25270 hypothetical protein 74 7e-14
At2g02650 putative reverse transcriptase 71 7e-13
At2g01840 putative non-LTR retroelement reverse transcriptase 67 1e-11
At2g31520 putative non-LTR retroelement reverse transcriptase 66 2e-11
At3g09510 putative non-LTR reverse transcriptase 65 4e-11
At2g25550 putative non-LTR retroelement reverse transcriptase 65 4e-11
At1g17390 hypothetical protein 63 2e-10
At2g04420 putative non-LTR retrolelement reverse transcriptase 62 3e-10
At2g34320 putative non-LTR retroelement reverse transcriptase 57 1e-08
At2g45230 putative non-LTR retroelement reverse transcriptase 56 2e-08
At3g31420 hypothetical protein 55 3e-08
At2g33160 putative polygalacturonase 55 5e-08
At2g17910 putative non-LTR retroelement reverse transcriptase 54 7e-08
At1g27870 hypothetical protein 54 1e-07
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 95.5 bits (236), Expect = 3e-20
Identities = 67/207 (32%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTN-FGVGDHGSWIRSQARSRNSV---R 56
C C+ EE ILH LRDCP + IW RL L + F W+ + +
Sbjct: 944 CSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDPVKGIWPTL 1003
Query: 57 FLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFIT--------FSNGVAGDHGSW 108
F G+W WKWR VF + R+IC + +FI G G+ +
Sbjct: 1004 FGMGIWWAWKWRCCDVFGE---------RKICRDRLKFIKDMAEEVRRVHVGAVGNRPNG 1054
Query: 109 LSS----RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALI 164
+ RWQ P G VK+ D + AGG IR+ QG WLGGF + A +
Sbjct: 1055 VRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALNIGSCAAPL 1114
Query: 165 AEATALLLGLELVWDLGYRQVMVEVDC 191
AE GL + WD G+R+V +++DC
Sbjct: 1115 AELWGAYYGLLIAWDKGFRRVELDLDC 1141
>At2g27870 putative non-LTR retroelement reverse transcriptase
Length = 314
Score = 92.8 bits (229), Expect = 2e-19
Identities = 61/211 (28%), Positives = 89/211 (41%), Gaps = 30/211 (14%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL------------GALAWTNFGVGDHGSWIRSQ 48
C C E+ I+H LRDCP + IW+RL L W +GD R
Sbjct: 22 CQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLLEWLFANLGDR----RKT 77
Query: 49 ARSRNSVRFLAGVWGVWKWRNNMVFEDSPWLVDEACRR-------ICHEHDEFITFSNGV 101
S S F +W WKWR +F V + CR + E +
Sbjct: 78 CESTWSTLFALSIWWAWKWRCGNIFG-----VQDKCRDRVRFLKDLARETSMAHVIVRTL 132
Query: 102 AGDHGSWLSS--RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSG 159
+G HG + W P++G KLN D + AGG++RD++G W GGF +
Sbjct: 133 SGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGV 192
Query: 160 GNALIAEATALLLGLELVWDLGYRQVMVEVD 190
+A +AE + GL + W+ ++ +EVD
Sbjct: 193 CSAPLAELWGVYYGLYIAWERRVTRLEIEVD 223
>At2g22350 putative non-LTR retroelement reverse transcriptase
Length = 321
Score = 91.7 bits (226), Expect = 4e-19
Identities = 70/219 (31%), Positives = 92/219 (41%), Gaps = 14/219 (6%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTN-FGVGDHGSWIRSQARSRNS--VRF 57
C C EE ILH LRDCP IW RL F WI R R S F
Sbjct: 35 CQICQGGEETILHVLRDCPAMAGIWSRLVPRDQIRQFFTASLLEWIYKNLRERGSWPTVF 94
Query: 58 LAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSS-----R 112
+ VW WKWR +F + D + + E + +N + +S
Sbjct: 95 VMAVWWGWKWRCGNIFGGNGKCRDRV--KFIKDLAEEVAIANAFVKGNEVRVSRVERLVS 152
Query: 113 WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIAEATALLL 172
W P+ G VKLN D + AGG++RD G W+GGF + +A +AE +
Sbjct: 153 WVSPEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYY 212
Query: 173 GLELVWDLGYRQVMVEVD----CGELLQVMADEESCRFL 207
GL + W G R+V +EVD G L +AD FL
Sbjct: 213 GLFIAWGRGARRVELEVDSKMVVGFLTTGIADSHPLSFL 251
>At2g07730 putative non-LTR retroelement reverse transcriptase
Length = 970
Score = 85.1 bits (209), Expect = 4e-17
Identities = 62/205 (30%), Positives = 87/205 (42%), Gaps = 25/205 (12%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQ---ARSRNSVRF 57
C C+ +E ILH LRDCP IW RL N W+ + A+ F
Sbjct: 685 CSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFSQF-EWLFTNLDPAKGDWPTLF 743
Query: 58 LAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFIT-FSNGVAGDHGSWLSS----- 111
G+W WKWR VF + R++C + +FI + V H L++
Sbjct: 744 SMGIWWAWKWRCGDVFGE---------RKLCRDRLKFIKDIAEEVRKAHVGTLNNHVKRA 794
Query: 112 ------RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIA 165
RW+ P VKL D + A G I + QG WLGGF + +A +A
Sbjct: 795 RVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLA 854
Query: 166 EATALLLGLELVWDLGYRQVMVEVD 190
E GL + WD G+R+V + +D
Sbjct: 855 ELWGAYYGLLIAWDKGFRRVELNLD 879
>At4g08830 putative protein
Length = 947
Score = 79.3 bits (194), Expect = 2e-15
Identities = 67/225 (29%), Positives = 92/225 (40%), Gaps = 21/225 (9%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWT-NFGVGDHGSWIRSQARSRNS----- 54
C C +E ILH L+DCP IW RL + + +F G W+ +N+
Sbjct: 718 CQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNGSLFGWLYVNLGMKNAETGYA 777
Query: 55 --VRFLAGVWGVWKWRNNMVF------EDSPWLVDEACRRICHEHDEFITFSNGVAGDHG 106
F VW WKWR VF D + + H H I NG
Sbjct: 778 WATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFFRDLAAEVSHAHA--IHSQNGGLRTRV 835
Query: 107 SWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALIAE 166
L + W+PP VKLN D + GG++RD G W GGF +A +AE
Sbjct: 836 ERLVA-WKPPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAE 894
Query: 167 ATALLLGLELVWDLGYRQVMVEVD----CGELLQVMADEESCRFL 207
+ GL + W+ + +V +EVD G L ++D S FL
Sbjct: 895 LWGVYYGLYMAWERRFTRVELEVDSELVVGFLTTGISDTHSLSFL 939
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 78.2 bits (191), Expect = 5e-15
Identities = 61/206 (29%), Positives = 86/206 (41%), Gaps = 21/206 (10%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRL-GALAWTNFGVGDHGSWIRSQAR-------SR 52
C C E ILH LRDCP IW R+ +F W+ S R S
Sbjct: 1620 CQVCRGGIESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSD 1679
Query: 53 NSVRFLAGVWGVWKWRNNMVFEDSPWLVDEACR-RICHEHDEFITFSNGVAGDHGSWLSS 111
S F VW WKWR + +F ++ + CR R+ D + S + + LS
Sbjct: 1680 WSTMFAMAVWWGWKWRCSNIFGEN-----KTCRDRVRFIKDLAVEVSIAYSREVELRLSG 1734
Query: 112 -------RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGNALI 164
RW PP +G K+N D + AGG++R+ G W GGF + +A +
Sbjct: 1735 LRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPL 1794
Query: 165 AEATALLLGLELVWDLGYRQVMVEVD 190
AE + GL + W + +EVD
Sbjct: 1795 AELWGVYYGLYMAWAKQLTHLELEVD 1820
>At3g25270 hypothetical protein
Length = 343
Score = 74.3 bits (181), Expect = 7e-14
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGA----LAWTNFGVGDHGSWIRSQARSRNSVR 56
C RC +E H DC ++Q++W G L T + + S + +
Sbjct: 56 CHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ 115
Query: 57 F----LAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSSR 112
+ +W +WK RN +VF+ +R ++ E+ + V + SSR
Sbjct: 116 LFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSR 175
Query: 113 ----------WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRS-GGN 161
WQ P +K N D +F Q R AG L+RD+ G+++G A S +
Sbjct: 176 HQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSD 235
Query: 162 ALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEE 202
+L +E AL++ ++ W GYR+V+ E D ++ ++M +E+
Sbjct: 236 SLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEK 276
>At2g02650 putative reverse transcriptase
Length = 365
Score = 70.9 bits (172), Expect = 7e-13
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFG----VGDHGSWI--RSQARSRNS 54
C RC EE I H + +CP++Q +W + +G D+ + + S+ ++ NS
Sbjct: 75 CQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNS 134
Query: 55 V-RFLAG--VWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDH------ 105
+ RFL +W +WK RN +F+ D R+ + E++ + +
Sbjct: 135 LDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATN 194
Query: 106 ----GSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQG-IWLGGFYAHRSGG 160
SS+W PP +G VK N D + + +G IR+ G I L G +S
Sbjct: 195 PIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSST 254
Query: 161 NALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEE 202
+L AEA L L+++W G R V E D L+ ++ + E
Sbjct: 255 CSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNGE 296
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 67.0 bits (162), Expect = 1e-11
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 19/226 (8%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDH---GSWIRSQARSRNSVRF 57
C RC +E I H + C ++Q +W D+ + Q + ++
Sbjct: 1426 CQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPI 1485
Query: 58 LAGV------WGVWKWRNNMVFEDS---PWLVDEACRRICHE------HDEFITFSNGVA 102
L G+ W +WK RN +F+ PW V + + E +D I+ + +
Sbjct: 1486 LNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNTAQS 1545
Query: 103 GDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQG-IWLGGFYAHRSGGN 161
D S +W P +G +K N D + + G ++RD G + G + +
Sbjct: 1546 NDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYS 1605
Query: 162 ALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEESCRFL 207
AL AEA L L++VW GY V E D EL ++ E L
Sbjct: 1606 ALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHLL 1651
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 65.9 bits (159), Expect = 2e-11
Identities = 65/232 (28%), Positives = 90/232 (38%), Gaps = 53/232 (22%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQARSR-------N 53
CPRC E I H L CP + W W + S IR+Q S N
Sbjct: 1240 CPRCHRENESINHALFTCPFATMAW-------WLS-----DSSLIRNQLMSNDFEENISN 1287
Query: 54 SVRFLAG--------------VWGVWKWRNNMVFE---DSPWLVDEACRRICHE------ 90
+ F+ +W +WK RNN+VF +SP + + H+
Sbjct: 1288 ILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 1347
Query: 91 -HDEFITFSNGVAGDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGI- 148
H + + + +A + W+ P VK N D F Q G +IR+ G
Sbjct: 1348 SHKKTPSPTRQIAEN-----KIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTP 1402
Query: 149 --WLGGFYAHRSGGNALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVM 198
W AH S N L AE ALL L+ W GY QV +E DC L+ ++
Sbjct: 1403 ISWGSMKLAHTS--NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 1452
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 65.1 bits (157), Expect = 4e-11
Identities = 66/232 (28%), Positives = 90/232 (38%), Gaps = 53/232 (22%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQARSR-------N 53
CPRC E I H L CP + W RL S IR+Q S N
Sbjct: 200 CPRCHRENESINHALFTCPFATMAW-RLS-----------DSSLIRNQLMSNDFEENISN 247
Query: 54 SVRFLAG--------------VWGVWKWRNNMVFE---DSPWLVDEACRRICHE------ 90
+ F+ +W +WK RNN+VF +SP + + H+
Sbjct: 248 ILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 307
Query: 91 -HDEFITFSNGVAGDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGI- 148
H + + + +A + W+ P VK N D F Q G +IR+ G
Sbjct: 308 SHKKTPSPTRQIAEN-----KIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTP 362
Query: 149 --WLGGFYAHRSGGNALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVM 198
W AH S N L AE ALL L+ W GY QV +E DC L+ ++
Sbjct: 363 ISWGSMKLAHTS--NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 412
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 65.1 bits (157), Expect = 4e-11
Identities = 66/232 (28%), Positives = 90/232 (38%), Gaps = 53/232 (22%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQARSR-------N 53
CPRC E I H L CP + W RL S IR+Q S N
Sbjct: 1466 CPRCHRENESINHALFTCPFATMAW-RLS-----------DSSLIRNQLMSNDFEENISN 1513
Query: 54 SVRFLAG--------------VWGVWKWRNNMVFE---DSPWLVDEACRRICHE------ 90
+ F+ +W +WK RNN+VF +SP + + H+
Sbjct: 1514 ILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQ 1573
Query: 91 -HDEFITFSNGVAGDHGSWLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGI- 148
H + + + +A + W+ P VK N D F Q G +IR+ G
Sbjct: 1574 SHKKTPSPTRQIAEN-----KIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTP 1628
Query: 149 --WLGGFYAHRSGGNALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVM 198
W AH S N L AE ALL L+ W GY QV +E DC L+ ++
Sbjct: 1629 ISWGSMKLAHTS--NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLI 1678
>At1g17390 hypothetical protein
Length = 322
Score = 63.2 bits (152), Expect = 2e-10
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 54 SVRFLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFI---TFSNGVAGDHGSWLS 110
+V F +W WKWR +F ++ + C + FI A H ++
Sbjct: 42 AVTFSQAIWWGWKWRYGNIFGEN---------KKCRDRVRFIKDRALDVWKAHVHKMGVT 92
Query: 111 SR---------WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGGN 161
+R W PP+ G KLN D + R AGG++RD G W GF + +
Sbjct: 93 TRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCYGFSLNIGICS 152
Query: 162 ALIAEATALLLGLELVWDLGYRQVMVEVD 190
A +AE GL + W+ G Q+ +E+D
Sbjct: 153 APLAELWGAYYGLNIAWERGVTQLEMEID 181
>At2g04420 putative non-LTR retrolelement reverse transcriptase
Length = 221
Score = 62.0 bits (149), Expect = 3e-10
Identities = 43/151 (28%), Positives = 71/151 (46%), Gaps = 15/151 (9%)
Query: 61 VWGVWKWRNNMVFEDSPWLVDEACRRICHE------HDEFITFSNGVAGDHG----SWLS 110
+W +W+ RN +VF+ +R + E+I N G
Sbjct: 1 MWRLWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNRESTH 60
Query: 111 SRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAHRSGG---NALIAEA 167
+W+ P G +K N D SF + + +G LIRDD+G + G A GG NAL +E
Sbjct: 61 QKWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGA--AQAVGGTMNNALESEL 118
Query: 168 TALLLGLELVWDLGYRQVMVEVDCGELLQVM 198
AL++ ++ W GYR+V+ E D ++ +++
Sbjct: 119 QALVMAMQHTWSQGYRKVIFEGDSKQVEELL 149
>At2g34320 putative non-LTR retroelement reverse transcriptase
Length = 292
Score = 57.0 bits (136), Expect = 1e-08
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 20/219 (9%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALA-----WTN------FGVGDHGSWIRSQA 49
C RC E + H L C ++ +W A WT+ + V + I
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLG 71
Query: 50 RSRNSVRFLAGVWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSW- 108
+ N V +L +W +WK RN ++F+ + E RR + +E+ T G
Sbjct: 72 KIGNLVPWL--LWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQV 129
Query: 109 ---LSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQG--IWLGGFYAHRSGGNAL 163
LS +W+ P VK N D ++ ++ G G ++R++ G +W+G R+ N L
Sbjct: 130 ERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRT-KNVL 188
Query: 164 IAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEE 202
AE AL + + Y++++ E D L+ ++ ++
Sbjct: 189 EAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDD 227
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 56.2 bits (134), Expect = 2e-08
Identities = 58/226 (25%), Positives = 92/226 (40%), Gaps = 38/226 (16%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQARSRNSVRFLAG 60
C RC + E + H L CP ++ W A + G W S R+ + V +
Sbjct: 1092 CVRCPSHGETVNHLLFKCPFARLTW------AISPLPAPPGGEWAESLFRNMHHVLSVHK 1145
Query: 61 ---------------VWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDH 105
+W +WK RN++VF+ + + + + D + N
Sbjct: 1146 SQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAW----NNRKEPQ 1201
Query: 106 GSWLSS------RWQPPKQGVVKLNMDESFWEQD--RCMGAGGLIRDDQG--IWLGGFYA 155
SS +WQPP G VK N D + W +D C G G ++R+ G +WL G A
Sbjct: 1202 PQVTSSTRDRCVKWQPPSHGWVKCNTDGA-WSKDLGNC-GVGWVLRNHTGRLLWL-GLRA 1258
Query: 156 HRSGGNALIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADE 201
S + L E AL + + YR+V+ E D L+ ++ +E
Sbjct: 1259 LPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNE 1304
>At3g31420 hypothetical protein
Length = 1491
Score = 55.5 bits (132), Expect = 3e-08
Identities = 57/224 (25%), Positives = 97/224 (42%), Gaps = 23/224 (10%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIWLRLGALAWTNFGVGDHGSWIRSQARSR-------- 52
C RC EE H +C +++ W G N D + + R+
Sbjct: 1206 CKRCCRDEETSQHLFFECDYAKATWRGAGL---PNLIFQDSIVTLEEKFRAMFTFNPSTT 1262
Query: 53 NSVRFLAG--VWGVWKWRNNMVFEDS--PWLVDEACRRI----CHEHDEFITFSNGVAGD 104
N R L +W +W+ RN + F+ PW V + + ++ + N ++
Sbjct: 1263 NYWRQLPFWILWRLWRSRNILTFQQKHIPWEVTVQLAKQDALEWQDIEDRVQVINPLSRR 1322
Query: 105 HGS-WLSSRWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIWLGGFYAH-RSGGNA 162
H + + ++RW P G K N D S+ AG +IRD+ G ++GG A + NA
Sbjct: 1323 HSNRYAANRWTRPVCGWKKCNYDGSYSTIINSK-AGWVIRDEHGQFIGGGQAKGKHTNNA 1381
Query: 163 LIAEATALLLGLELVWDLGYRQVMVEVDCGELLQVMADEESCRF 206
L + AL++ ++ W G+ +V E D E+ Q++ +E RF
Sbjct: 1382 LESALQALIIAMQSCWSHGHTKVCFEGDNIEVYQIL-NEGKARF 1424
>At2g33160 putative polygalacturonase
Length = 664
Score = 54.7 bits (130), Expect = 5e-08
Identities = 42/145 (28%), Positives = 67/145 (45%), Gaps = 9/145 (6%)
Query: 61 VWGVWKWRNNMVFEDS--PWLVD-EACRRICHEHDEFITFSNGVAGDHGSWLSSR---WQ 114
+W +W RN + F+ PW + + E +E +T S+ HG+ + S W+
Sbjct: 447 LWRLWNSRNILYFQRRHVPWETTLQLAQMDLQEWNEAVTPSH--INSHGTTIRSHIPNWR 504
Query: 115 PPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIW-LGGFYAHRSGGNALIAEATALLLG 173
P G VK N+D SF + G ++RD G + G NAL E ALL+
Sbjct: 505 RPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNGRYEFAGQAIGNCIDNALECEFQALLMA 564
Query: 174 LELVWDLGYRQVMVEVDCGELLQVM 198
++ W GYR++ E D E+ ++
Sbjct: 565 MQHCWSKGYRRICFEGDNKEMFDLI 589
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 54.3 bits (129), Expect = 7e-08
Identities = 37/155 (23%), Positives = 70/155 (44%), Gaps = 8/155 (5%)
Query: 1 CPRCSAPEEDILHCLRDCPHSQEIW-LRLGALAWTNFGVGDHGSWIR-----SQARSRNS 54
C C E I H L +CP ++++W + + A + F + + R Q +
Sbjct: 1062 CLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHH 1121
Query: 55 VRFLAG--VWGVWKWRNNMVFEDSPWLVDEACRRICHEHDEFITFSNGVAGDHGSWLSSR 112
+RF++ +W +WK RN ++FE + + + E+ + + D ++
Sbjct: 1122 LRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITK 1181
Query: 113 WQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQG 147
W PP G +K N+ ++ +Q GA ++RD QG
Sbjct: 1182 WCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQG 1216
>At1g27870 hypothetical protein
Length = 213
Score = 53.5 bits (127), Expect = 1e-07
Identities = 30/80 (37%), Positives = 44/80 (54%), Gaps = 1/80 (1%)
Query: 112 RWQPPKQGVVKLNMDESFWEQDRCMGAGGLIRDDQGIW-LGGFYAHRSGGNALIAEATAL 170
RW+ P++G +K N D SF D AG ++RD G + L G R NAL +E AL
Sbjct: 51 RWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQAIGRKVDNALESEIQAL 110
Query: 171 LLGLELVWDLGYRQVMVEVD 190
++ ++ W GY++V E D
Sbjct: 111 IISMQHCWSHGYKRVCFEGD 130
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.333 0.143 0.509
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,762,010
Number of Sequences: 26719
Number of extensions: 276329
Number of successful extensions: 789
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 77
length of query: 278
length of database: 11,318,596
effective HSP length: 98
effective length of query: 180
effective length of database: 8,700,134
effective search space: 1566024120
effective search space used: 1566024120
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0118c.6