BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0114.10
         (1082 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g59265 polyprotein, putative                                       396  e-110
At1g58889 polyprotein, putative                                       395  e-110
At1g31210 putative reverse transcriptase                              368  e-101
At1g44510 polyprotein, putative                                       366  e-101
At4g28900 putative protein                                            358  9e-99
At4g10690 retrotransposon like protein                                355  8e-98
At1g53810                                                             352  5e-97
At1g60020 hypothetical protein                                        352  7e-97
At4g16870 retrotransposon like protein                                343  3e-94
At4g02960 putative polyprotein of LTR transposon                      317  3e-86
At2g07420 putative retroelement pol polyprotein                       305  1e-82
At1g70010 hypothetical protein                                        299  7e-81
At2g16000 putative retroelement pol polyprotein                       296  6e-80
At2g14930 pseudogene                                                  291  1e-78
At3g59720 copia-type reverse transcriptase-like protein               275  1e-73
At1g36620 hypothetical protein                                        273  3e-73
At3g61330 copia-type polyprotein                                      273  4e-73
At1g37110                                                             271  2e-72
At1g26990 polyprotein, putative                                       268  9e-72
At1g48710 hypothetical protein                                        267  2e-71

>At1g59265 polyprotein, putative
          Length = 1466

 Score =  396 bits (1018), Expect = e-110
 Identities = 265/740 (35%), Positives = 364/740 (48%), Gaps = 121/740 (16%)

Query: 49   STWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPL 108
            + W +D+GA+ H+ S   NL+ +   +     + V  G  IPI  +G T+L T  K +PL
Sbjct: 329  NNWLLDSGATHHITSDFNNLSLHQPYTG-GDDVMVADGSTIPISHTGSTSLST--KSRPL 385

Query: 109  TLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLY--P 166
             L ++L+ P I KNLISV +L   N VSV F P  F V D  TG+PL++  +  +LY  P
Sbjct: 386  NLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWP 445

Query: 167  VTPSVPFAGLAQ-------SLWHSRLGHPGSSALQSLRSNKFITYEHLNSPTV-CESCVF 218
            +  S P +  A        S WH+RLGHP  S L S+ SN  ++  + +   + C  C+ 
Sbjct: 446  IASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLI 505

Query: 219  GKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKS 278
             K  ++PF  S   +  P + ++SD+W+SP+LS   +RYYV+F+D FT + W +PL  KS
Sbjct: 506  NKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKS 565

Query: 279  QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
            QV E F +  + +   F   +     DNG EF   +   Y + HG+    S PHT   NG
Sbjct: 566  QVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNG 623

Query: 339  KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
             +ERK R I     TLL+HAS+P ++W +A  +A YL+N +P   L   SP Q L+   P
Sbjct: 624  LSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSP 683

Query: 399  SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
            +Y  LRVFGC CYP +     +KL  +S  CVFLGY L    Y C  L   ++ ISRHV 
Sbjct: 684  NYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVR 743

Query: 459  FDETRFPFA------------------------TMPT-----PPPSTYD---CFSDPIHP 486
            FDE  FPF+                        T+PT     P PS  D     + P  P
Sbjct: 744  FDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSP 803

Query: 487  SIIHQ-----------------WTSPDPS------PTSVVPPAVT--------------- 508
            S   +                  +SP+P+      P     P  T               
Sbjct: 804  SAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNP 863

Query: 509  ----PSQL------PTTSTSSSASP-------PSSPSPPS----PPQPVPPI-------- 539
                PSQL      P  S+SSS SP        +SP+PPS    PP P+  I        
Sbjct: 864  TNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAP 923

Query: 540  ---RTMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALI 596
                +M TR+  GI KP   ++L+V++        P+    AL D  W++AM SE +A I
Sbjct: 924  LNTHSMGTRAKAGIIKPNPKYSLAVSL---AAESEPRTAIQALKDERWRNAMGSEINAQI 980

Query: 597  RNKTWDLV-PRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSP 655
             N TWDLV P PS V I+ C WIF  K  ++G   RYKARLV  G +Q  G+D  ETFSP
Sbjct: 981  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP 1040

Query: 656  VVKPATIRTVLTIALSGLGP 675
            V+K  +IR VL +A+    P
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWP 1060


>At1g58889 polyprotein, putative
          Length = 1466

 Score =  395 bits (1014), Expect = e-110
 Identities = 264/740 (35%), Positives = 363/740 (48%), Gaps = 121/740 (16%)

Query: 49   STWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPL 108
            + W +D+GA+ H+ S   NL+ +   +     + V  G  IPI  +G T+L T  K +PL
Sbjct: 329  NNWLLDSGATHHITSDFNNLSLHQPYTG-GDDVMVADGSTIPISHTGSTSLST--KSRPL 385

Query: 109  TLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLY--P 166
             L ++L+ P I KNLISV +L   N VSV F P  F V D  TG+PL++  +  +LY  P
Sbjct: 386  NLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWP 445

Query: 167  VTPSVPFAGLAQ-------SLWHSRLGHPGSSALQSLRSNKFITYEHLNSPTV-CESCVF 218
            +  S P +  A        S WH+RLGHP  S L S+ SN  ++  + +   + C  C+ 
Sbjct: 446  IASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLI 505

Query: 219  GKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKS 278
             K  ++PF  S   +  P + ++SD+W+SP+LS   +RYYV+F+D FT + W +PL  KS
Sbjct: 506  NKSNKVPFSQSTINSTRPLEYIYSDVWSSPILSHDNYRYYVIFVDHFTRYTWLYPLKQKS 565

Query: 279  QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
            QV E F +  + +   F   +     DNG EF   +   Y + HG+    S PHT   NG
Sbjct: 566  QVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNG 623

Query: 339  KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
             +ERK R I     TLL+HAS+P ++W +A  +A YL+N +P   L   SP Q L+   P
Sbjct: 624  LSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSP 683

Query: 399  SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
            +Y  LRVFGC CYP +     +KL  +S  CVFLGY L    Y C  L   ++ ISRHV 
Sbjct: 684  NYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVR 743

Query: 459  FDETRFPFA------------------------TMPT-----PPPSTYD---CFSDPIHP 486
            FDE  FPF+                        T+PT     P PS  D     + P  P
Sbjct: 744  FDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSP 803

Query: 487  SIIHQ-----------------WTSPDPS------PTSVVPPAVT--------------- 508
            S   +                  +SP+P+      P     P  T               
Sbjct: 804  SAPFRNSQVSSSNLDSSFSSSFPSSPEPTAPRQNGPQPTTQPTQTQTQTHSSQNTSQNNP 863

Query: 509  ----PSQL------PTTSTSSSASP-------PSSPSPPS----PPQPVPPI-------- 539
                PSQL      P  S+SSS SP        +SP+PPS    PP P+  I        
Sbjct: 864  TNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAP 923

Query: 540  ---RTMATRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALI 596
                +M TR+  GI KP   ++L+V++        P+    AL D  W++AM SE +A I
Sbjct: 924  LNTHSMGTRAKAGIIKPNPKYSLAVSL---AAESEPRTAIQALKDERWRNAMGSEINAQI 980

Query: 597  RNKTWDLV-PRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSP 655
             N TWDLV P PS V I+ C WIF  K  ++G   RYKAR V  G +Q  G+D  ETFSP
Sbjct: 981  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARFVAKGYNQRPGLDYAETFSP 1040

Query: 656  VVKPATIRTVLTIALSGLGP 675
            V+K  +IR VL +A+    P
Sbjct: 1041 VIKSTSIRIVLGVAVDRSWP 1060


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  368 bits (944), Expect = e-101
 Identities = 233/659 (35%), Positives = 325/659 (48%), Gaps = 40/659 (6%)

Query: 43  TLAPPDST---WYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTL 99
           TL   D T   W+ D+ A++HV SS   L S +     +  + VG G  +PI  +G TT+
Sbjct: 311 TLRVSDDTGKEWHPDSAATAHVTSSTNGLQSATEYEG-DDAVLVGDGTYLPITHTGSTTI 369

Query: 100 PTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCN 159
            +S+   PL  + VL  P I K+L+SV +L  D    V FD     + D QT   +    
Sbjct: 370 KSSNGKIPL--NEVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGP 427

Query: 160 SLGDLYPVTPSVPFAGL--------AQSLWHSRLGHPGSSALQSLRSNKFITYEHLNSPT 211
               LY V  +  F  L         + +WH RLGH  S ALQ L+++K I      +  
Sbjct: 428 RRNGLY-VLENQEFVALYSNRQCAATEEVWHHRLGHANSKALQHLQNSKAIQINKSRTSP 486

Query: 212 VCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSPVLSSAGHRYYVLFLDDFTDFLW 270
           VCE C  GK  RLPF+ S++  + P D +H DLW  SPV+S+ G +YY +F+DD++ + W
Sbjct: 487 VCEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSW 546

Query: 271 TFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSC 330
            +PL NKS+   +F S    +    +  +K  Q D G EF +     + + HG+  R SC
Sbjct: 547 FYPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISC 606

Query: 331 PHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPT 390
           P+T  QNG AERK R +  +  ++L H+  P  FW  +   A Y++N +P   L NLSP 
Sbjct: 607 PYTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPY 666

Query: 391 QLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRK 450
           + L+   P Y+ LRVFG  CYP +     NK  PRS  CVFLGY   ++GY+CF     K
Sbjct: 667 EALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGK 726

Query: 451 IIISRHVIFDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPAVTPS 510
           + ISR+VIF+E+  PF        S    +S P+  +  H   S    P + V     P 
Sbjct: 727 VYISRNVIFNESELPF---KEKYQSLVPQYSTPLLQAWQHNKISEISVPAAPVQLFSKPI 783

Query: 511 QLPTTSTSSSASPPSSPSPPS----PPQPVPPI--------------RTMATRSMRGIYK 552
            L T + S      + P P S      + V P+                M TRS  GI K
Sbjct: 784 DLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQVINSHAMTTRSKAGIQK 843

Query: 553 PRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNI 612
           P   + L   I     +  PK    A+  P W  A+  E + +    TW LVP   D+NI
Sbjct: 844 PNTRYAL---ITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNI 900

Query: 613 IRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIALS 671
           +   W+F  K   +G  ++ KARLV  G  Q  GVD  ETFSPVV+ ATIR VL ++ S
Sbjct: 901 LSSKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTS 959


>At1g44510 polyprotein, putative
          Length = 1459

 Score =  366 bits (939), Expect = e-101
 Identities = 250/719 (34%), Positives = 348/719 (47%), Gaps = 106/719 (14%)

Query: 51   WYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLTL 110
            W +D+GA+ H+ S    L+ +   +   + + +  G G+ I+ +G T LP+  +++ L L
Sbjct: 337  WLLDSGATHHITSDLNALSLHQPYNG-GEYVMIADGTGLTIKQTGSTFLPS--QNRDLAL 393

Query: 111  SHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLY--PVT 168
              VL+ P I KNLISV +L   N VSV F P  F V D  TG  L++  +  DLY  PVT
Sbjct: 394  HKVLYVPDIRKNLISVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDDLYEWPVT 453

Query: 169  P-------SVPFAGLAQSLWHSRLGHPGSSALQSLRSNKFITYEHLNS-PTVCESCVFGK 220
                    + P      S WHSRLGHP +S L +L S   +     +S  T C  C+  K
Sbjct: 454  NPPATALFTSPSPKTTLSSWHSRLGHPSASILNTLLSKFSLPVSVASSNKTSCSDCLINK 513

Query: 221  HVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKSQV 280
              +LPF +S+  +  P + + +D+WTSP++S   ++YY++ +D +T + W +PL  KSQV
Sbjct: 514  SHKLPFATSSIHSSSPLEYIFTDVWTSPIISHDNYKYYLVLVDHYTRYTWLYPLQQKSQV 573

Query: 281  FEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNGKA 340
               F +    +   F   ++ L  DNG EF   +   +  ++G+    S PHT   NG +
Sbjct: 574  KATFIAFKALVENRFQAKIRTLYSDNGGEF--IALRDFLVSNGISHLTSPPHTPEHNGLS 631

Query: 341  ERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDPSY 400
            ERK R I     TLL  ASVP  +W +A   A YL+N +P   L   SP Q L+   P+Y
Sbjct: 632  ERKHRHIVETGLTLLTQASVPREYWTYAFATAVYLINRMPTPVLCLQSPFQKLFGSSPNY 691

Query: 401  THLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVIFD 460
              LRVFGCLC+P +   T NKL+ RS  CVFLGY L    Y C D+ + ++  SRHV+FD
Sbjct: 692  QRLRVFGCLCFPWLRPYTRNKLEERSKRCVFLGYSLTQTAYLCLDVDNNRLYTSRHVMFD 751

Query: 461  ETRFPFA---------TMPTPPPSTYDCFSDPIHP----SIIHQWTSPDPSPTSVVPP-- 505
            E+ +PFA         ++ TPP S+    S P +     S++   + P  SP +  PP  
Sbjct: 752  ESTYPFAASIREQSQSSLVTPPESSSS--SSPANSGFPCSVLRLQSPPASSPETPSPPQQ 809

Query: 506  ----AVTPSQL--PTTSTSS-------SASPPSSPSPPSPPQ---PVPPIRTMATRSMRG 549
                 V+P Q   PT S  S       S SP  S S P+ P    P P  ++       G
Sbjct: 810  QNDSPVSPRQTGSPTPSHHSQVRDSTLSPSPSVSNSEPTAPHENGPEPEAQSNPNSPFIG 869

Query: 550  -IYKPRKLFNLSVTI-----DDPTISPLPKN----------------------------- 574
             +  P    N S +I     D  T + LP N                             
Sbjct: 870  PLPNPNPETNPSSSIEQRPVDKSTTTALPPNQTTIAATSNSRSQPPKNNHQMKTRSKNNI 929

Query: 575  --PKL---------------------ALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVN 611
              PK                      AL D  W+ AM  EFDA  RN TWDLVP     +
Sbjct: 930  TKPKTKTSLTVALTQPHLSEPNTVTQALKDKKWRFAMSDEFDAQQRNHTWDLVPPNPTQH 989

Query: 612  IIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIAL 670
            ++ C W+F  K   NG  ++YKARLV  G +Q  GVD  ETFSPV+K  TIR VL +A+
Sbjct: 990  LVGCRWVFKLKYLPNGLIDKYKARLVAKGFNQQYGVDYAETFSPVIKATTIRVVLDVAV 1048


>At4g28900 putative protein
          Length = 1415

 Score =  358 bits (919), Expect = 9e-99
 Identities = 243/722 (33%), Positives = 344/722 (46%), Gaps = 107/722 (14%)

Query: 34  DIATAMHTMTLAPPDST-WYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQ 92
           D + A   M ++   S  W  D+GA+SH+ +S   L S    S     + VG+   +PI 
Sbjct: 275 DFSKAFAAMRVSDQKSNPWVTDSGATSHITNSTSQLQSAQPYSG-EDSVIVGNSDFLPIT 333

Query: 93  GSGDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTG 152
             G   L ++  + PL    VL  P I K+L+SV +LT+D    + FD  G  V D  T 
Sbjct: 334 HIGSAVLTSNQGNLPLR--DVLVCPNITKSLLSVSKLTSDYPCVIEFDSDGVIVKDKLTK 391

Query: 153 IPLMRCNSLGDLYPVTPSVPFA-------GLAQSLWHSRLGHPGSSALQSLRSNKFITYE 205
             L +     DLY +      A         +  +WH RLGHP    LQ L  NK I   
Sbjct: 392 QLLTKGTRHNDLYLLENPKFMACYSSRQQATSDEVWHMRLGHPNQDVLQQLLRNKAIVIS 451

Query: 206 HLNSPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSPVLSSAGHRYYVLFLDD 264
              S ++C++C  GK  +LPF SS+ V+    + +H DLW  +PV+SS G RYYV+F+D+
Sbjct: 452 K-TSHSLCDACQMGKICKLPFASSDFVSSRLLERVHCDLWGPAPVVSSQGFRYYVIFIDN 510

Query: 265 FTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGL 324
           ++ F W +PL  KS  F +F +    +       +   QCD G EF +  F ++ A  G+
Sbjct: 511 YSRFTWFYPLRLKSDFFSVFLTFQKMVENQCQQKIASFQCDGGGEFISNQFVSHLAECGI 570

Query: 325 IFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSL 384
               SCP+T  QNG AERK R I  +  +++    VP   W  A   + +L N++P   L
Sbjct: 571 RQLISCPYTPQQNGIAERKHRHITELGSSMMFQGKVPQFLWVEAFYTSNFLCNLLPSSVL 630

Query: 385 SN-LSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKC 443
            +  SP ++L  + P YT LRVFGC CYP +     NK  P+S  CVF GY   ++GYKC
Sbjct: 631 KDQKSPYEVLMGKAPVYTSLRVFGCACYPNLRPYASNKFDPKSLLCVFTGYNEKYKGYKC 690

Query: 444 FDLSHRKIIISRHVIFDETRFPFATMPTPPPSTYDCFSDPI---HPSIIHQWTSPDPSPT 500
           F     KI I+RHV+FDE++F F+          D +SD +   + +++  W S +  P 
Sbjct: 691 FHPPTGKIYINRHVLFDESKFLFS----------DIYSDKVSGTNSTLVSAWQS-NFLPK 739

Query: 501 SVVPPAVTPSQLPTTSTSSSASP-----------------------------PSSP-SPP 530
           S+  PA TP  L  ++T++S S                              PSSP +  
Sbjct: 740 SI--PA-TPEVLDISNTAASFSDEQGEFSGAVGGGGCGCTADLDSVPIGNSLPSSPVTQQ 796

Query: 531 SPPQPVPPIRT-------------------------------------------MATRSM 547
           + PQP  PI +                                           M TRS 
Sbjct: 797 NSPQPETPISSAGSGNDAEDSELSENSENSESSVFSEATTETEAADNTNDQSHPMITRSK 856

Query: 548 RGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRP 607
            GI+KP   + +     +    P+PK  K AL DP W  AM  E+D+     TWDLVP  
Sbjct: 857 SGIFKPNPKYAMFTVKSN---YPVPKTVKTALKDPGWTDAMGEEYDSFEETHTWDLVPPD 913

Query: 608 SDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLT 667
           S +  + C W+F  K KA+G  +R KARLV  G  Q  GVD  ET+SPVV+ AT+RT+L 
Sbjct: 914 SFITPLGCRWVFKTKLKADGTLDRLKARLVAKGYEQEEGVDYMETYSPVVRTATVRTILH 973

Query: 668 IA 669
           +A
Sbjct: 974 VA 975


>At4g10690 retrotransposon like protein
          Length = 1515

 Score =  355 bits (911), Expect = 8e-98
 Identities = 242/726 (33%), Positives = 345/726 (47%), Gaps = 95/726 (13%)

Query: 31   VPTDIATAMHTMTLAPPDST----WYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSG 86
            +P D+  A   M ++  +      W  D+ A++H+ ++   L +    S  +  + VG+G
Sbjct: 300  LPEDLPNAFAAMRVSDQNQASSHEWLPDSAATAHITNTTDGLQNSQTYSG-DDSVIVGNG 358

Query: 87   QGIPIQGSGDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSV 146
              +PI   G  T+P +     L L  VL  P I K+L+SV +LT D   S  FD     +
Sbjct: 359  DFLPITHIG--TIPLNISQGTLPLEDVLVCPGITKSLLSVSKLTDDYPCSFTFDSDSVVI 416

Query: 147  HDFQTGIPLMRCNSLGDLYPVTPSVPFAGLAQS--------LWHSRLGHPGSSALQSLRS 198
             D +T   L + N    LY V   VPF     +        +WH RLGHP    LQ L  
Sbjct: 417  KDKRTQQLLTQGNKHKGLY-VLKDVPFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIK 475

Query: 199  NKFITYEHLNSPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSPVLSSAGHRY 257
             K I     +S  +CE+C  GK  RLPFV+S  V+  P + +H DLW  +PV S+ G +Y
Sbjct: 476  TKAIVVNKTSS-NMCEACQMGKVCRLPFVASEFVSSRPLERIHCDLWGPAPVTSAQGFQY 534

Query: 258  YVLFLDDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHA 317
            YV+F+D+++ F W +PL  KS  F +F      +   + H +   QCD G EF +  F A
Sbjct: 535  YVIFIDNYSRFTWFYPLKLKSDFFSVFVLFQQLVENQYQHKIAMFQCDGGGEFVSYKFVA 594

Query: 318  YCAAHGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLN 377
            + A+ G+    SCPHT  QNG AER+ R +  +  +L+ H+ VP   W  A   + +L N
Sbjct: 595  HLASCGIKQLISCPHTPQQNGIAERRHRYLTELGLSLMFHSKVPHKLWVEAFFTSNFLSN 654

Query: 378  IIPRKSLS-NLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPL 436
            ++P  +LS N SP ++L+   P YT LRVFG  CYP +     NK  P+S  CVFLGY  
Sbjct: 655  LLPSSTLSDNKSPYEMLHGTPPVYTALRVFGSACYPYLRPYAKNKFDPKSLLCVFLGYNN 714

Query: 437  HHRGYKCFDLSHRKIIISRHVIFDETRFP-------FATMPTPP---------------- 473
             ++GY+C      K+ I RHV+FDE +FP       F T+   P                
Sbjct: 715  KYKGYRCLHPPTGKVYICRHVLFDERKFPYSDIYSQFQTISGSPLFTAWQKGFSSTALSR 774

Query: 474  ------------PSTYDCFSDP--IHPSIIHQWTSPDPSPTS----VVPPA-VTPSQLPT 514
                        PS     S P    P+I    T+PD    +    VVPP+ +T + LPT
Sbjct: 775  ETPSTNVEDIIFPSATVSSSVPTGCAPNIAETATAPDVDVAAAHDMVVPPSPITSTSLPT 834

Query: 515  -----------------TSTSSSASPPSSPSPPSPPQPVPPIRT--------------MA 543
                             T+ SS+ +P S           PP+++              M 
Sbjct: 835  QPEESTSDQNHYSTDSETAISSAMTPQSINVSLFEDSDFPPLQSVISSTTAAPETSHPMI 894

Query: 544  TRSMRGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDL 603
            TR+  GI KP   + L       +  P PK+ K AL D  W +AM  E   +    TWDL
Sbjct: 895  TRAKSGITKPNPKYAL---FSVKSNYPEPKSVKEALKDEGWTNAMGEEMGTMHETDTWDL 951

Query: 604  VPRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIR 663
            VP      ++ C W+F  K  ++G  +R KARLV  G  Q  GVD  ET+SPVV+ AT+R
Sbjct: 952  VPPEMVDRLLGCKWVFKTKLNSDGSLDRLKARLVARGYEQEEGVDYVETYSPVVRSATVR 1011

Query: 664  TVLTIA 669
            ++L +A
Sbjct: 1012 SILHVA 1017


>At1g53810 
          Length = 1522

 Score =  352 bits (904), Expect = 5e-97
 Identities = 236/714 (33%), Positives = 328/714 (45%), Gaps = 81/714 (11%)

Query: 31   VPTDIATAMHTMTLAPPDSTWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIP 90
            +P  +AT   T         W  D+ AS+HV ++  ++   S   H +  + V  G  +P
Sbjct: 306  LPMALATMRITDVTDHHGHEWIPDSAASAHVTNNR-HVLQQSQPYHGSDSIMVADGNFLP 364

Query: 91   IQGSGDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQ 150
            I  +G  ++ +S    PL    VL  P IVK+L+SV +LT+D   SV FD     ++D  
Sbjct: 365  ITHTGSGSIASSSGKIPL--KEVLVCPDIVKSLLSVSKLTSDYPCSVEFDADSVRINDKA 422

Query: 151  TGIPLMRCNSLGDLYP-------VTPSVPFAGLAQSLWHSRLGHPGSSALQSLRSNKFIT 203
            T   L+   +   LY        V  S      +  +WH RLGH  +  L  L S+K I 
Sbjct: 423  TKKLLVMGRNRDGLYSLEEPKLQVLYSTRQNSASSEVWHRRLGHANAEVLHQLASSKSII 482

Query: 204  YEHLNSPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSPVLSSAGHRYYVLFL 262
              +    TVCE+C  GK  RLPF+ S      P + +H DLW  SP  S  G RYYV+F+
Sbjct: 483  IINKVVKTVCEACHLGKSTRLPFMLSTFNASRPLERIHCDLWGPSPTSSVQGFRYYVVFI 542

Query: 263  DDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAH 322
            D ++ F W +PL  KS  F  F      +     H +K  QCD G EF ++ F  +   H
Sbjct: 543  DHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDH 602

Query: 323  GLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRK 382
            G+    SCP+T  QNG AERK R I  +  +++  + +P  +W  +   A +++N++P  
Sbjct: 603  GIQQNMSCPYTPQQNGMAERKHRHIVELGLSMIFQSKLPLKYWLESFFTANFVINLLPTS 662

Query: 383  SL-SNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGY 441
            SL +N SP Q LY + P Y+ LRVFGC CYP +      K  PRS  CVFLGY   ++GY
Sbjct: 663  SLDNNESPYQKLYGKAPEYSALRVFGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYKGY 722

Query: 442  KCFDLSHRKIIISRHVIFDETRFPFATM------------------------PT------ 471
            +C      +I ISRHV+FDE   PF ++                        PT      
Sbjct: 723  RCLYPPTGRIYISRHVVFDENTHPFESIYSHLHPQDKTPLLEAWFKSFHHVTPTQPDQSR 782

Query: 472  ------PPPSTYDCFSDPIHPSI------IHQWTSPDPSPTSVV---------------- 503
                  P P T D  + P   +           TS D    SVV                
Sbjct: 783  YPVSSIPQPETTDLSAAPASVAAETAGPNASDDTSQDNETISVVSGSPERTTGLDSASIG 842

Query: 504  ----PPAVTPSQLPTTSTSSSASPPSSPSPPSPPQ----PVPPIRTMATRSMRGIYKPRK 555
                 P    S      +S ++SP  SP   +P Q    PV     M TR   GI KP K
Sbjct: 843  DSYHSPTADSSHPSPARSSPASSPQGSPIQMAPAQQVQAPVTNEHAMVTRGKEGISKPNK 902

Query: 556  LFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRC 615
             +   V +      P PK    AL  P W +AMQ E       +TW LVP   ++N++  
Sbjct: 903  RY---VLLTHKVSIPEPKTVTEALKHPGWNNAMQEEMGNCKETETWTLVPYSPNMNVLGS 959

Query: 616  MWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
            MW+F  K  A+G  ++ KARLV  G  Q  G+D  ET+SPVV+  T+R +L +A
Sbjct: 960  MWVFRTKLHADGSLDKLKARLVAKGFKQEEGIDYLETYSPVVRTPTVRLILHVA 1013


>At1g60020 hypothetical protein
          Length = 1194

 Score =  352 bits (903), Expect = 7e-97
 Identities = 238/747 (31%), Positives = 352/747 (46%), Gaps = 115/747 (15%)

Query: 20  RPQAHAASTSPVPTDIATAMHTMTLAPPDSTWYMDTGASSHVASSPGNLTSYSNLSHLNQ 79
           +P+A+AA  SP   +                W +D+GA+ H+ S   NL+ +   +   +
Sbjct: 272 QPRANAAIASPYNAN---------------NWLLDSGATHHITSDLNNLSLHQPYTG-GE 315

Query: 80  KLYVGSGQGIPIQGSGDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCF 139
            + +  G G+ I  +G   + T  +   L L+ VL+ P I KNLISV ++   N VSV F
Sbjct: 316 DVTIADGSGLSISHTGSALISTPSRS--LALTDVLYVPNIHKNLISVYRMCNANKVSVEF 373

Query: 140 DPYGFSVHDFQTGIPLMRCNSLGDLY--PVTPSVPFAGLAQSL-------WHSRLGHPGS 190
            P  F V D +TG+ L++  +  +LY  PV P  P +    +        WHSRLGHP  
Sbjct: 374 FPAHFQVKDLKTGVQLLQGRTKDELYEWPVNPPKPSSHFTTTTPKTDLTSWHSRLGHPSL 433

Query: 191 SALQSLRSNKFITYEH-LNSPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTSPV 249
           S L+ + S   +   + L     C  C+  K  +LPF ++   +  P + L+ DLWTSP+
Sbjct: 434 STLKVVVSQFSLPVSNSLQKQFNCSDCLLNKTHKLPFHTNTITSTQPLEYLYIDLWTSPI 493

Query: 250 LSSAGHRYYVLFLDDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPE 309
           +S    +YY++ +D +T + W +P+  KS V ++F +    +   F   +  L  DNG E
Sbjct: 494 VSIDNFKYYLVIVDHYTRYSWFYPIKQKSHVKDVFMTFKALVANKFQRKIIHLYSDNGGE 553

Query: 310 FDNTSFHAYCAAHGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHAL 369
           F   +  ++ +++G+    + PHT   NG +ERK R I     TLL  AS+P S+W +A 
Sbjct: 554 F--IALRSFLSSNGITHLTTPPHTPEHNGISERKHRHIVETGLTLLGQASMPKSYWSYAF 611

Query: 370 QMATYLLNIIPRKSLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPC 429
            +A YL+N +    +  +SP + L+ + P+Y  LRVFGCLC+P +   T +KL  R +PC
Sbjct: 612 TIAIYLINRMSSDVIGGISPYKRLFGQAPNYLKLRVFGCLCFPWLRPYTTHKLDDRPAPC 671

Query: 430 VFLGYPLHHRGYKCFDLSHRKIIISRHVIFDETRFPF--------------------ATM 469
           VFLGY      Y C + +  ++  SRHV F E  +PF                     T+
Sbjct: 672 VFLGYSQTQSAYLCLNRTTGRVYTSRHVQFVENTYPFTKPTLDPFTNLEESNNHSITTTV 731

Query: 470 PTPP----PSTYDCFSDPIHPSIIHQWTSPDP-SPTSVVPPAVT---------------- 508
           P+PP    PS      DP  P       SP P SP S+  P +T                
Sbjct: 732 PSPPFVQLPSVPPPTRDPHQPPPSQPAPSPSPLSPPSMSSPVMTSSPQFSSNRDSTTLHG 791

Query: 509 -----------------PSQLPTTSTSSS-------------ASPPSSP-SPPSPPQPVP 537
                            P   PTTS S S              +PP+SP S  S P P+P
Sbjct: 792 DYSHVDYGLSSPSNPPGPITSPTTSKSPSEPTSSPSHSNQPNKTPPNSPSSSSSSPTPIP 851

Query: 538 PIRTMATRS------MRGIYKPRKLFNLSVTIDDPTISPLPKNPKL-------ALSDPNW 584
                ++ S       +   + R   N++  I   T++  PK           AL DPNW
Sbjct: 852 SPSPQSSNSPPPPPQNQHSMRTRAKNNITKPIKKLTLAATPKGKSKIPTTVAEALRDPNW 911

Query: 585 KSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQI 644
           ++AM  EF+A +RN T+DLVP     N +   WIF  K   +G   RYKAR +  G  Q 
Sbjct: 912 RNAMSEEFNAGLRNSTYDLVPPKPHQNFVGTRWIFTIKYNPDGSINRYKARFLAKGFHQQ 971

Query: 645 AGVDCDETFSPVVKPATIRTVLTIALS 671
            G+D   TFSPV+K  T++TVL IA+S
Sbjct: 972 HGLDYSNTFSPVIKSTTVQTVLDIAVS 998


>At4g16870 retrotransposon like protein
          Length = 1474

 Score =  343 bits (880), Expect = 3e-94
 Identities = 241/740 (32%), Positives = 344/740 (45%), Gaps = 125/740 (16%)

Query: 49   STWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPL 108
            + W +D+GA+ H+ S    L  +   +     + +  G  + I  +G T LP++ +   L
Sbjct: 331  NNWLLDSGATHHITSDLNALALHQPYN--GDDVMIADGTSLKITKTGSTFLPSNARD--L 386

Query: 109  TLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLY--P 166
            TL+ VL+ P I KNL+SV +L   N VSV F P  F V D  TG  L++  +  +LY  P
Sbjct: 387  TLNKVLYVPDIQKNLVSVYRLCNTNQVSVEFFPASFQVKDLNTGTLLLQGRTKDELYEWP 446

Query: 167  VTP-------SVPFAGLAQSLWHSRLGHPGSSALQSLRSNKFITYE-HLNSPTVCESCVF 218
            VT        + P      S WHSRLGHP SS L +L S   +      ++   C  C  
Sbjct: 447  VTNPKATALFTTPSPKTTLSSWHSRLGHPSSSILNTLISKFSLPVSVSASNKLACSDCFI 506

Query: 219  GKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKS 278
             K  +LPF  S+  +  P + + SD+W SP+LS   ++YY++ +D  T + W +PL  KS
Sbjct: 507  NKSHKLPFSISSIKSTSPLEYIFSDVWMSPILSPDNYKYYLVLVDHHTRYTWLYPLQQKS 566

Query: 279  QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
            QV   F +    +   F   ++ L  DNG EF   +   +  ++G+    S PHT   NG
Sbjct: 567  QVKSTFIAFKALVENRFQAKIRTLYSDNGGEF--IALREFLVSNGISHLTSPPHTPEHNG 624

Query: 339  KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
             +ERK R I     TLL  ASVP  +W +A   A YL+N +P   LS  SP Q L+   P
Sbjct: 625  LSERKHRHIVETGLTLLTQASVPREYWPYAFAAAVYLINRMPTPVLSMESPFQKLFGSKP 684

Query: 399  SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
            +Y  LRVFGCLC+P +   T NKL+ RS  CVFLGY L    Y CFD+ H+++  SRHV+
Sbjct: 685  NYERLRVFGCLCFPWLRPYTHNKLEERSRRCVFLGYSLTQTAYLCFDVEHKRLYTSRHVV 744

Query: 459  FDETRFPFATMPTP---PPSTYDCFSDPIHPSIIHQWT---SPDPSPTSVV----PPAVT 508
            FDE  FPF+ + +    P  T++  S P+   I+   +   S   SP +V+    PP  T
Sbjct: 745  FDEASFPFSNLTSQNSLPTVTFEQSSSPLVTPILSSSSVLPSCLSSPCTVLHQQQPPVTT 804

Query: 509  P----SQLPTT----------------------------STSSSASPPSSPSP--PSPPQ 534
            P    S  PTT                            S+SS  S P++P+   P P  
Sbjct: 805  PNSPHSSQPTTSPAPLSPHRSTTMDFQVPQVRSSSPLLSSSSSLNSEPTAPNENGPEPEA 864

Query: 535  PVPPIRTMATRSMRGIYKPRKLFNLSVTID-DPTISPLPK-------------------- 573
              PPI  ++  +      P    N + T + +PT +P PK                    
Sbjct: 865  QSPPIGPLSNPTHEAFIGPLPNPNRNPTNEIEPTPAPHPKPVKPTTTTTTPNRTTVSDAS 924

Query: 574  ------------------------NPKLALSD--PNWKSAMQSEFDALIRNKTW------ 601
                                    N K +L+   PN   +  +     +++K W      
Sbjct: 925  HQPTAPQQNQHNMKTRAKNNIKKPNTKFSLTATLPNRSPSEPTNVTQALKDKKWRFAMSD 984

Query: 602  -----------DLVPRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCD 650
                       DLVP  S + ++ C W+F  K   NG  ++YKARLV  G +Q  GVD  
Sbjct: 985  EFDAQQRNHTWDLVPHESQL-LVGCKWVFKLKYLPNGAIDKYKARLVAKGFNQQYGVDYA 1043

Query: 651  ETFSPVVKPATIRTVLTIAL 670
            ETFSPV+K  TIR VL +A+
Sbjct: 1044 ETFSPVIKSTTIRLVLDVAV 1063


>At4g02960 putative polyprotein of LTR transposon
          Length = 1456

 Score =  317 bits (811), Expect = 3e-86
 Identities = 202/579 (34%), Positives = 291/579 (49%), Gaps = 45/579 (7%)

Query: 49  STWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPL 108
           + W +D+GA+ H+ S   NL+ +   +     + +  G  IPI  +G  +LPTS   + L
Sbjct: 308 NNWLLDSGATHHITSDFNNLSFHQPYTG-GDDVMIADGSTIPITHTGSASLPTS--SRSL 364

Query: 109 TLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLY--P 166
            L+ VL+ P I KNLISV +L   N VSV F P  F V D  TG+PL++  +  +LY  P
Sbjct: 365 DLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWP 424

Query: 167 VTPS-------VPFAGLAQSLWHSRLGHPGSSALQSLRSNKFITYEHLNSPTV-CESCVF 218
           +  S        P +    S WHSRLGHP  + L S+ SN  +   + +   + C  C  
Sbjct: 425 IASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFI 484

Query: 219 GKHVRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKS 278
            K  ++PF +S   +  P + ++SD+W+SP+LS   +RYYV+F+D FT + W +PL  KS
Sbjct: 485 NKSHKVPFSNSTITSSKPLEYIYSDVWSSPILSIDNYRYYVIFVDHFTRYTWLYPLKQKS 544

Query: 279 QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
           QV + F      +   F   +  L  DNG EF       Y + HG+    S PHT   NG
Sbjct: 545 QVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNG 602

Query: 339 KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
            +ERK R I  M  TLL+HASVP ++W +A  +A YL+N +P   L   SP Q L+ + P
Sbjct: 603 LSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPP 662

Query: 399 SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
           +Y  L+VFGC CYP +     +KL+ +S  C F+GY L    Y C  +   ++  SRHV 
Sbjct: 663 NYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQ 722

Query: 459 FDETRFPFATMPTPPPSTYDCFSD-----------PIHPSII--------HQWTSPDP-- 497
           FDE  FPF+T      ++ +  SD           P  P ++        H  TSP P  
Sbjct: 723 FDERCFPFSTTNFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPS 782

Query: 498 SPTSVVPPAVTPSQLPTTSTSS-SASPPSSPSPPSPPQPVPPIRTMATRSMRGIY----- 551
           SP+ +    V+ S LP++S SS S+S P++PS   P     P +T  + S   I      
Sbjct: 783 SPSPLCTTQVSSSNLPSSSISSPSSSEPTAPSHNGPQPTAQPHQTQNSNSNSPILNNPNP 842

Query: 552 ---KPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSA 587
               P      S     P  SP    P  ++S+PN  S+
Sbjct: 843 NSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSS 881



 Score =  123 bits (308), Expect = 6e-28
 Identities = 75/189 (39%), Positives = 107/189 (55%), Gaps = 11/189 (5%)

Query: 494  SPDPSPTSVVPPAVTPSQLPTTSTSSSASPPSSPSPPSPP----QPVPPIRT--MATRSM 547
            SP  SP  +  P+ + S+  + S+SS+++PP  P  P+PP        P+ T  MATR+ 
Sbjct: 859  SPISSP-HIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAK 917

Query: 548  RGIYKPRKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRP 607
             GI KP + ++ + ++     +  P+    A+ D  W+ AM SE +A I N TWDLVP P
Sbjct: 918  DGIRKPNQKYSYATSL---AANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPP 974

Query: 608  S-DVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVL 666
               V I+ C WIF  K  ++G   RYKARLV  G +Q  G+D  ETFSPV+K  +IR VL
Sbjct: 975  PPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1034

Query: 667  TIALSGLGP 675
             +A+    P
Sbjct: 1035 GVAVDRSWP 1043


>At2g07420 putative retroelement pol polyprotein
          Length = 1664

 Score =  305 bits (780), Expect = 1e-82
 Identities = 209/692 (30%), Positives = 325/692 (46%), Gaps = 94/692 (13%)

Query: 53  MDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLTLSH 112
           +D+GAS H+ S    +   SN+      + + +G  IP++G GD  L           S 
Sbjct: 315 IDSGASHHMISDSKLI---SNIEPALGNVVIANGDRIPVKGVGDLDLFDKS-------SK 364

Query: 113 VLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLYPVT---P 169
             + P    NL+SV++ TTD N    F P      D +T   L +  +   LY +    P
Sbjct: 365 AFYMPTFTSNLLSVKKATTDLNCYAIFGPNEVHFQDIETSRVLGQGVTKDGLYVLEDTKP 424

Query: 170 SVPFAGLAQSL--------WHSRLGHPGSSALQSLRSNKFITYEHLNSPTVCESCVFGKH 221
           SVP +    S+        WH+RLGHP S AL+ L  +     +       CE+C+ GKH
Sbjct: 425 SVPLSSHFSSILGNANSESWHARLGHPHSRALKLLLPSTSFKNDE------CEACILGKH 478

Query: 222 VRLPFVSSNNVTVMPFDILHSDLWTSPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKSQVF 281
            +  F  S+ +    FD++HSD+WTSP LS   H+Y+V F+D+ + F W   L +K +V 
Sbjct: 479 CKSVFPKSSTIYEKCFDLIHSDVWTSPCLSRENHKYFVTFIDEKSKFTWFTLLPSKDRVL 538

Query: 282 EMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNGKAE 341
           E FT+    +  H+   +K L+ DN  E+ + +F  +   HG+I + SCP+T  QNG AE
Sbjct: 539 EAFTNFQTYVTNHYDAKIKILRSDNRGEYTSHAFKQHLNKHGIIHQTSCPYTPQQNGVAE 598

Query: 342 RKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDPSYT 401
           RK R +  + R ++ H +VP  FW   +  A YL+N  P K L + SP ++L +  P   
Sbjct: 599 RKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACYLINQTPTKILLDSSPFEVLNKVKPFIN 658

Query: 402 HLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVIFDE 461
           HLRVFGC+C+ L+     NKLQP+S+  +F+GY ++ +GYKC+ L  RK++ISR V F E
Sbjct: 659 HLRVFGCVCFVLISGEQRNKLQPKSTKGMFIGYSINQKGYKCYVLETRKVLISRDVKFLE 718

Query: 462 TRFPF-----------ATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPS-PTSVVPPAVTP 509
           ++  +              P+   +      + +  S I   T+P  S P ++  P    
Sbjct: 719 SKSYYDKKNWEDIQDLTDSPSDRATNLRIILERLGVSNIQTQTTPRTSNPETITQPENME 778

Query: 510 SQ-------------------LPTTSTSSSASPPSS-------------PSPPSPPQPVP 537
            +                   L  T +S      +S                 S  +P  
Sbjct: 779 EEEEEEEEEEEKQGKEQELITLEETESSKVQEKDTSLLNDDNGHTNNQEEDSNSREEPRI 838

Query: 538 PIRTMATRSMRGIYKPRKLFNLSVTIDDP-----TISPLPKNPKLALS--DPNW------ 584
           P R+   +  R  Y  +  F+    ++ P     T++ LP+  ++     D +W      
Sbjct: 839 PRRSEHLKDKRVYYNNQVYFD--NVVEHPIQVVCTLAHLPEEHQVFFGKVDQHWIPQTYE 896

Query: 585 --------KSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFERYKARL 636
                   + A+ +E  A+  N TWD    P    ++   W+F  K K++G  ERYKARL
Sbjct: 897 EAITHQVWRDAIAAEKQAMENNHTWDEDELPRGKKVVTSKWVFAIKYKSDGEIERYKARL 956

Query: 637 VGDGRSQIAGVDCDETFSPVVKPATIRTVLTI 668
           V  G +Q  G D  +TF+PV K  T+R VL++
Sbjct: 957 VARGFTQTYGEDYLDTFAPVAKLHTVRVVLSL 988


>At1g70010 hypothetical protein
          Length = 1315

 Score =  299 bits (765), Expect = 7e-81
 Identities = 199/615 (32%), Positives = 287/615 (46%), Gaps = 61/615 (9%)

Query: 94  SGDTTLPTS---HKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQ 150
           S  T  P S   H  + L L+ VL  PQ   NL+SV  LT      + FD     + D  
Sbjct: 306 SSSTVCPISGSVHLGRHLILNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDAT 365

Query: 151 TGIPLMRCNSLGDLYPVT----------PSVPFAGL-AQSLWHSRLGHPGSSALQSLRSN 199
             + +     + +LY V            S+  A + +  LWH RLGHP    LQ + S 
Sbjct: 366 RELMVGMGKQVANLYIVDLDSLSHPGTDSSITVASVTSHDLWHKRLGHPSVQKLQPMSSL 425

Query: 200 KFITYEHLNSPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTS-PVLSSAGHRYY 258
                +  N+   C  C   K   LPFVS NN +  PFD++H D W    V +  G+RY+
Sbjct: 426 LSFPKQKNNTDFHCRVCHISKQKHLPFVSHNNKSSRPFDLIHIDTWGPFSVQTHDGYRYF 485

Query: 259 VLFLDDFTDFLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAY 318
           +  +DD++   W + L NKS V  +  +    +   F   +K ++ DN PE + T F+  
Sbjct: 486 LTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELNFTQFYH- 544

Query: 319 CAAHGLIFRFSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNI 378
             + G++   SCP T  QN   ERK + I N+ R+L   + +P S+W   +  A YL+N 
Sbjct: 545 --SKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLINR 602

Query: 379 IPRKSLSNLSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHH 438
           +P   L +  P ++L +  P+Y H++VFGCLCY        +K  PR+  C F+GYP   
Sbjct: 603 LPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPSGF 662

Query: 439 RGYKCFDLSHRKIIISRHVIFDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPS 498
           +GYK  DL    II+SRHV+F E  FPF                    S   Q   PD +
Sbjct: 663 KGYKLLDLETHSIIVSRHVVFHEELFPFLGSDL---------------SQEEQNFFPDLN 707

Query: 499 PTSVVPPAVTPSQLPTTSTSSSASPPSSPSP-PSPPQPVPPIRTMATRSMRGIY------ 551
           PT   PP    S      + SS+S    PS  P+   P P ++T   ++ +  Y      
Sbjct: 708 PT---PPMQRQSSDHVNPSDSSSSVEILPSANPTNNVPEPSVQTSHRKAKKPAYLQDYYC 764

Query: 552 ---------KPRKLFNLSVTIDDPTISPL--------PKNPKLALSDPNWKSAMQSEFDA 594
                    + RK  +    I+DP ++ L        P N   A     W+ AM +EFD 
Sbjct: 765 HSVVSSTPHEIRKFLSYD-RINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDF 823

Query: 595 LIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFS 654
           L    TW++   P+D   I C WIF  K  ++G  ERYKARLV  G +Q  G+D +ETFS
Sbjct: 824 LEGTHTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFS 883

Query: 655 PVVKPATIRTVLTIA 669
           PV K  +++ +L +A
Sbjct: 884 PVAKLNSVKLLLGVA 898


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  296 bits (757), Expect = 6e-80
 Identities = 209/653 (32%), Positives = 306/653 (46%), Gaps = 48/653 (7%)

Query: 35   IATAMHTMTLAPPDSTWYMDTGASSHVASSPGNLTSY--SNLSHLNQKLYVGSGQGIPIQ 92
            +  A HT++ A    TW +D+GA+ HV+      +S   S LS +N    + +G  + I 
Sbjct: 419  LTVARHTLSSA----TWVIDSGATHHVSHDRSLFSSLDTSVLSAVN----LPTGPTVKIS 470

Query: 93   GSGDTTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTG 152
            G G   L     +  + L +VL  P+   NLIS+  LT D    V FD     + D   G
Sbjct: 471  GVGTLKL-----NDDILLKNVLFIPEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKG 525

Query: 153  IPLMRCNSLGDLYPVT---PSVPFAGLAQ-SLWHSRLGHPGSSALQSLRSNKFITYEHLN 208
              L +   + +LY +     S+    +   S+WH RLGH     L ++  +   T     
Sbjct: 526  RMLGQGRRVANLYLLDVGDQSISVNAVVDISMWHRRLGHASLQRLDAISDSLGTTRHKNK 585

Query: 209  SPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLWTS-PVLSSAGHRYYVLFLDDFTD 267
                C  C   K  +L F +SN V    FD+LH D+W    V +  G++Y++  +DD + 
Sbjct: 586  GSDFCHVCHLAKQRKLSFPTSNKVCKEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSR 645

Query: 268  FLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFR 327
              W + L  KS+V  +F +   Q+   +   VK ++ DN PE   TSF+A     G++  
Sbjct: 646  ATWMYLLKTKSEVLTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTSFYA---EKGIVSF 702

Query: 328  FSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNL 387
             SCP T  QN   ERK + I N+ R L+  + VP S W   +  A +L+N  P + L N 
Sbjct: 703  HSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNK 762

Query: 388  SPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLS 447
            +P ++L    P Y  LR FGCLCY        +K QPRS  C+FLGYP  ++GYK  DL 
Sbjct: 763  TPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLE 822

Query: 448  HRKIIISRHVIFDETRFPFATMPTPPPSTYDCFSD--PIHPSIIHQWT-SPD--PSPTSV 502
               + ISR+V F E  FP A  P    S+   F+   P+   II   T SP   PS  S 
Sbjct: 823  SNTVFISRNVQFHEEVFPLAKNP-GSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISD 881

Query: 503  VPPAVTPSQLPTTSTSSSASPPSSPSPPSPPQPVPPIRTMATRSMRGIYKPRKLFNLSVT 562
            +PP +        S+     PP+  +            TM +     I        +S +
Sbjct: 882  LPPQI--------SSQRVRKPPAHLNDYH-------CNTMQSDHKYPISSTISYSKISPS 926

Query: 563  ----IDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWI 618
                I++ T  P+P N   A     W  A+ +E  A+ +  TW++   P     + C W+
Sbjct: 927  HMCYINNITKIPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWV 986

Query: 619  FHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIALS 671
            F  K  A+G  ERYKARLV  G +Q  G+D  +TFSPV K  TI+ +L ++ S
Sbjct: 987  FTLKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSAS 1039


>At2g14930 pseudogene
          Length = 1149

 Score =  291 bits (746), Expect = 1e-78
 Identities = 213/676 (31%), Positives = 308/676 (45%), Gaps = 68/676 (10%)

Query: 37  TAMHTMTLAPPDSTWYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGD 96
           +A+H +T    DS W  D+ A++H+ ++   L         N  +    G  +PI   G 
Sbjct: 301 SALH-ITDVSDDSGWVPDSAATAHITNNSSRLQQMQPYLG-NDTVMASDGNFLPITHIGS 358

Query: 97  TTLPTSHKHKPLTLSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLM 156
             LP++  + PL    VL  P I K+L+SV +LT D   S  FD  G  V D  T   L 
Sbjct: 359 ANLPSTSGNLPL--KDVLVCPNIAKSLLSVSKLTKDYPCSFTFDADGVLVKDKATCKVLT 416

Query: 157 RCNSLGD-LYPVTP-------SVPFAGLAQSLWHSRLGHPGSSALQSLRSNKFITYEHLN 208
           + +S  + LY +         S         +WH RLGHP    LQ L + K I      
Sbjct: 417 KGSSTSEGLYKLENPKFQMFYSTRQVKATDEVWHMRLGHPNPQVLQLLANKKAIQINKST 476

Query: 209 SPTVCESCVFGKHVRLPFVSSNNVTVMPFDILHSDLW-TSPVLSSAGHRYYVLFLDDFTD 267
           S  +CESC  GK  RLPF++S+ +   P + +H DLW  +PV S  G +YYV+F+D+ + 
Sbjct: 477 SK-MCESCRLGKSSRLPFIASDFIASRPLERVHCDLWGPAPVSSIQGFQYYVIFIDNRSR 535

Query: 268 FLWTFPLSNKSQVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFR 327
           F W +PL +KS    +F      +       +   Q D G EF +  F  +    G+   
Sbjct: 536 FCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIGTFQSDGGGEFTSNRFLQHLQESGIQHY 595

Query: 328 FSCPHTSSQNGKAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSL-SN 386
            SCPHT  QNG AERK R +     TL+  +  P  FW  A   A +L N++P  +L S+
Sbjct: 596 ISCPHTPQQNGLAERKHRQLTERGLTLMFQSKAPQRFWVEAFFTANFLSNLLPTSALDSS 655

Query: 387 LSPTQLLYRRDPSYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDL 446
            +P Q+L+ + P Y+ LR FGC C+P + +   NK  PRS  C+FLGY   ++GY+CF  
Sbjct: 656 TTPYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYRCFFP 715

Query: 447 SHRKIIISRHVIFDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPA 506
              ++ +SRHV+FDE+ FPF         TY     P    +   W    PS +S +   
Sbjct: 716 PTNRVYLSRHVLFDESSFPFI-------DTYTSLQHPSPTPMFDAWLKSFPSSSSPL--- 765

Query: 507 VTPSQLPTTSTSSSASPPSSPSPPSPPQPVPPIRTMATRSMRGIYKPRKLFNLSVTIDDP 566
                  T   +S AS P   +  + P        ++ +    I  P     +S    D 
Sbjct: 766 ---ENDQTAGFNSGASVPVITAQQTQP-------ILSLKDGPNILLPEGEITVSSNNQDI 815

Query: 567 TISPLPKNPKLAL-SDPNWKS----AMQSE--------FDA-LIRNKTWDLVPR------ 606
              P+   P   L S+ N KS    +M SE        FD   I N      PR      
Sbjct: 816 EDEPICVTPLQTLSSEDNAKSSETLSMGSEECSECTASFDLDPIGNNALSSSPRHDQLTS 875

Query: 607 -----------PSDVNIIRCMWIFHHKTKAN--GCFERYKARLVGDGRSQIAGVDCDETF 653
                      P    + + +   + + K N  G  ++YKARLV  G  Q  G+D  ET+
Sbjct: 876 SIPRAATESTHPMTTRLKKGIIKLNQRVKLNVDGSLDKYKARLVAQGFKQEEGIDYLETY 935

Query: 654 SPVVKPATIRTVLTIA 669
           SPVV+ AT+R VL ++
Sbjct: 936 SPVVRSATVRAVLHLS 951


>At3g59720 copia-type reverse transcriptase-like protein
          Length = 1272

 Score =  275 bits (702), Expect = 1e-73
 Identities = 186/637 (29%), Positives = 305/637 (47%), Gaps = 54/637 (8%)

Query: 51  WYMDTGASSHVASSPGNLTSYSNLSH-LNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLT 109
           WY+D+GAS+H+    G  + ++ L   +   + +G    + ++G G+  +   +      
Sbjct: 335 WYLDSGASNHMC---GRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQF- 390

Query: 110 LSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQ----TGIPLM--RCNSLGD 163
           +S+V + P +  N++S+ QL  +    +       S+ D +    T +P+   R   L  
Sbjct: 391 ISNVYYIPSMKTNILSLGQLL-EKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNI 449

Query: 164 LYPVTPSVPFAGLAQS-LWHSRLGHPGSSALQSLRSNKFIT-YEHLNSPT-VCESCVFGK 220
              +   +      +S LWH R GH     L+ L   + +     +N P  VCE C+ G 
Sbjct: 450 RNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGN 509

Query: 221 HVRLPFVS-SNNVTVMPFDILHSDLWTSPVLSSAGH-RYYVLFLDDFTDFLWTFPLSNKS 278
             ++ F   S++    P +++H+D+       S G   Y++LF+DDF+   W + L  KS
Sbjct: 510 QFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKS 569

Query: 279 QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
           +VFE+F      +       +K ++ D+G EF +  F  YC  +G+  + + P +  QNG
Sbjct: 570 EVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNG 629

Query: 339 KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
            AERK RTI  M R++L    +P   W  A+  A YLLN  P KS+S  +P +    R P
Sbjct: 630 VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 399 SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
             +HLRVFG + +  VP    NKL  +S   +F+GY  + +GYK ++   +K IISR+++
Sbjct: 690 GVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIV 749

Query: 459 FDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPAVTPSQLPTTSTS 518
           FDE               +D  S+    +    +    P PT   PP+  P+  PT+ TS
Sbjct: 750 FDE------------EGEWDWNSNEEDYNFFPHFEEDKPEPTREEPPSEEPTTPPTSPTS 797

Query: 519 SSASPPSSPSPPSPPQPVPPIRTMATRSMRGIYKPRK------LFNLSVTIDDPTISPLP 572
           S     SS             RT   RS++ +Y+  +      LF L    +       P
Sbjct: 798 SQIEESSSE------------RTPRFRSIQELYEVTENQENLTLFCLFAECE-------P 838

Query: 573 KNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFERY 632
            + + A+    W++AM  E  ++ +N TW+L   P+    I   W++  K  + G  ERY
Sbjct: 839 MDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERY 898

Query: 633 KARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
           KARLV  G SQ AG+D DE F+PV +  T+R ++++A
Sbjct: 899 KARLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLA 935


>At1g36620 hypothetical protein
          Length = 1152

 Score =  273 bits (699), Expect = 3e-73
 Identities = 208/725 (28%), Positives = 327/725 (44%), Gaps = 82/725 (11%)

Query: 2    SQWTRPSAPPRQ-PGILGPRPQAHAASTSPVPTDIATAMHTMTLAPPDSTWYMDTGASSH 60
            +Q + PS+   +   I G   +A +A  + +  D AT+   ++       + +D+GAS H
Sbjct: 333  AQTSHPSSSASEFSDIPGVSKEAWSAIRNLLKQDTATSSEKLSGKTNCVDFLIDSGASHH 392

Query: 61   VASSPGNLTSYSNLSHL-----NQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLTLSHVLH 115
            +      LT    + H      N K  + + +G  I G+             + L+HVL 
Sbjct: 393  MTGFLDLLTEIYEIPHSVVVLPNAKHTIATKKGTLILGAN------------MKLTHVLF 440

Query: 116  TPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLYPVTPSVPFAG 175
             P +   LISV +L  + +    F      + D  + + +        +Y +  +   A 
Sbjct: 441  VPDLSCTLISVARLLRELHCFAIFTDKVCVIQDRTSKMLIGVGTESNGVYHLQRAEVVAT 500

Query: 176  LA--------QSLWHSRLGHPGSSALQSLRSNKFITYEHLNSP--TVCESCVFGKHVRLP 225
             A        ++LWH RLGHP S  L S+  +    ++  +S   T+C+ CV  K  R  
Sbjct: 501  SANVVKWKTNKALWHMRLGHPSSKVLSSVLPS-LEDFDSCSSDLKTICDVCVRAKQTRAS 559

Query: 226  FVSSNNVTVMPFDILHSDLWTS-PVLSSAGHRYYVLFLDDFTDFLWTFPLSNKSQVFEMF 284
            F  S N     F  +H D+W      SS G  Y++  +DD +  +W   +  KS+V  + 
Sbjct: 560  FSESFNKAEECFSFIHYDVWGPYKHASSCGAHYFLTIVDDHSRAVWIHLMLAKSEVASLL 619

Query: 285  TSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNGKAERKI 344
                      F+  VK ++ +NG EF   S  +Y A  G++ + SC +T  QNG+ ERK 
Sbjct: 620  QQFIAMASRQFNKQVKTVRSNNGTEF--MSLKSYFAERGIVHQISCVYTHQQNGRVERKH 677

Query: 345  RTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDPSYTHLR 404
            R I N+ R+LL  A +P SFW  ++  A YL+N  P   L   +P ++LY + PSY  LR
Sbjct: 678  RHILNVARSLLFQAELPISFWEESVLTAAYLINRTPTPILDGKTPYKILYSQPPSYASLR 737

Query: 405  VFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVIFDETRF 464
            VFG LC+    +  ++K Q R   C+F+GYP   +G++ +D+  +   +SR V+F E  F
Sbjct: 738  VFGSLCFARKHTGRLDKFQERGRKCIFVGYPHGQKGWRIYDIESQIFFVSRDVVFQEDIF 797

Query: 465  PFATMPTPPPSTYDCFSDP--IHPSIIHQWTSP--------DPSPTSVVPPAVTPSQLPT 514
            PFA          D FS P  + PS I  +           D   T+ +P  +  +  P 
Sbjct: 798  PFADKKNK-----DTFSSPAAVIPSPILPYDDEFLDIYQIGDVPATNPLPAIIDVNDSPP 852

Query: 515  TSTSSSASPPSSPSPP------------------------SPPQPVPP-----IRTMATR 545
            +S   +A+P ++  PP                           Q +       I  MA  
Sbjct: 853  SSPIITATPAAASPPPLRRGLRQRQENVRLKDYQTYSAQCESTQTLSDNIGTCIYPMANY 912

Query: 546  SMRGIYKP-RKLFNLSVTIDDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLV 604
                I+ P  + F  ++++ DP     P+    A+ +  W++A+  E DAL    TWD+ 
Sbjct: 913  VSGEIFSPSNQHFLAAISMVDP-----PQTYNQAIREKEWRNAVFFEVDALEDQGTWDIT 967

Query: 605  PRPSDVNIIRCMWIFHHKTKANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRT 664
              P  V  I   W+F  K  +NG  ERYKARLV  G  Q  G+D  +TF+PVVK  T+R 
Sbjct: 968  KLPQGVKAIGSKWVFRIKYNSNGTVERYKARLVALGNHQKEGIDFTKTFAPVVKMQTVRL 1027

Query: 665  VLTIA 669
            +L +A
Sbjct: 1028 LLDVA 1032


>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  273 bits (698), Expect = 4e-73
 Identities = 184/637 (28%), Positives = 304/637 (46%), Gaps = 54/637 (8%)

Query: 51  WYMDTGASSHVASSPGNLTSYSNLSH-LNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLT 109
           WY+D+GAS+H+    G  + ++ L   +   + +G    + ++G G+  +   +      
Sbjct: 335 WYLDSGASNHMC---GRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQF- 390

Query: 110 LSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQ----TGIPLM--RCNSLGD 163
           +S+V + P +  N++S+ QL  +    +       S+ D +    T +P+   R   L  
Sbjct: 391 ISNVYYIPSMKTNILSLGQLL-EKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNI 449

Query: 164 LYPVTPSVPFAGLAQS-LWHSRLGHPGSSALQSLRSNKFIT-YEHLNSPT-VCESCVFGK 220
              +   +      +S LWH R GH     L+ L   + +     +N P  VCE C+ GK
Sbjct: 450 RNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGK 509

Query: 221 HVRLPFVS-SNNVTVMPFDILHSDLWTSPVLSSAGH-RYYVLFLDDFTDFLWTFPLSNKS 278
             ++ F   S++    P +++H+D+       S G   Y++LF+DDF+   W + L  KS
Sbjct: 510 QFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKS 569

Query: 279 QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
           +VFE+F      +       +K ++ D G EF +  F  YC  +G+  + + P +  QNG
Sbjct: 570 EVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNG 629

Query: 339 KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
             ERK RTI  M R++L    +P   W  A+  A YLLN  P KS+S  +P +    R P
Sbjct: 630 VVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKP 689

Query: 399 SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
             +HLRVFG + +  VP    +KL  +S   +F+GY  + +GYK ++   +K IISR+++
Sbjct: 690 GVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIV 749

Query: 459 FDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPAVTPSQLPTTSTS 518
           FDE               +D  S+    +    +   +P PT   PP+  P+  PT+ TS
Sbjct: 750 FDE------------EGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTS 797

Query: 519 SSASPPSSPSPPSPPQPVPPIRTMATRSMRGIYKPRK------LFNLSVTIDDPTISPLP 572
           S     SS             RT   RS++ +Y+  +      LF L    +       P
Sbjct: 798 SQIEESSSE------------RTPRFRSIQELYEVTENQENLTLFCLFAECE-------P 838

Query: 573 KNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFERY 632
            + + A+    W++AM  E  ++ +N TW+L   P+    I   W++  K  + G  ERY
Sbjct: 839 MDFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERY 898

Query: 633 KARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
           KARLV  G SQ  G+D DE F+PV +  T+R ++++A
Sbjct: 899 KARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLA 935


>At1g37110 
          Length = 1356

 Score =  271 bits (692), Expect = 2e-72
 Identities = 191/645 (29%), Positives = 295/645 (45%), Gaps = 36/645 (5%)

Query: 51  WYMDTGASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLTL 110
           W +D+G +SH+ S      S+      N  + +G    +  QG G   + T H      L
Sbjct: 308 WILDSGCTSHMTSRRDWFISFQEKG--NTTILLGDDHSVESQGQGTIRIDT-HGGTIKIL 364

Query: 111 SHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLYPVTPS 170
            +V + P + +NLIS   L   + +    +     V  F+     +R +    LY +  S
Sbjct: 365 ENVKYVPHLRRNLISTGTL---DKLGYRHEGGEGKVRYFKNNKTALRGSLSNGLYVLDGS 421

Query: 171 VPFAGLAQS--------LWHSRLGHPGSSALQSLRSNKFITYEHLNSPTVCESCVFGKHV 222
              + L  +        LWHSRLGH   + L+ L     I  + +N    CE CV GK  
Sbjct: 422 TVMSELCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEFCEHCVMGKSK 481

Query: 223 RLPFVSSNNVTVMPFDILHSDLWTSPVL--SSAGHRYYVLFLDDFTDFLWTFPLSNKSQV 280
           ++ F    + +      +H+DLW SP +  S +G +Y++  +DD T  +W + L +K + 
Sbjct: 482 KVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKVWLYFLKSKDET 541

Query: 281 FEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNGKA 340
           F+ F      +    +  VKCL+ DNG EF N+ F +YC  HG+    +C +T  QNG A
Sbjct: 542 FDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVA 601

Query: 341 ERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDPSY 400
           ER  RTI   +R LL  + V   FW  A   A YL+N  P  ++++  P ++   R P Y
Sbjct: 602 ERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGY 661

Query: 401 THLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVIFD 460
            HLR FG + Y         KL+PR+    FLGYP   +GYK + L   K +ISR+V+F 
Sbjct: 662 KHLRKFGSIAY---VHQDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEEKCVISRNVVFQ 718

Query: 461 ETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPAVTPSQLPTTSTSSS 520
           E+   +  +      T +        S + Q    + S +  V    + S+ P T    S
Sbjct: 719 ES-VVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSE-PITEGEQS 776

Query: 521 ASPPSSPSPPSPPQPVPPIRTMAT------RSMRGIYKPRKL-----FNLSVTIDDPTIS 569
           +            Q  P    + T      R  R I  P +         ++ + +  I 
Sbjct: 777 SDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIV 836

Query: 570 PLPKNPKLALSDPN---WKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKAN 626
             P++ + A+   +   W  A   E D+L++N TWDLV +P D  II C W+F  K+   
Sbjct: 837 QEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIP 896

Query: 627 GCF-ERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIAL 670
           G    R+KARLV  G +Q  GVD  E F+PVVK  +IR ++++ +
Sbjct: 897 GVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVV 941


>At1g26990 polyprotein, putative
          Length = 1436

 Score =  268 bits (686), Expect = 9e-72
 Identities = 203/706 (28%), Positives = 310/706 (43%), Gaps = 72/706 (10%)

Query: 14   PGILGPRPQAHAASTSPVPTDI-----------ATAMHTMTLAPPDST------WYMDTG 56
            P I     +A A+S++PVP+             +T    +T + P  T      W +D+G
Sbjct: 367  PSISQITDKAIASSSNPVPSISQITGTFFSLYDSTYYEMLTSSIPIETELSLRAWVIDSG 426

Query: 57   ASSHVASSPGNLTSYSNLSHLNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLTLSHVLHT 116
            AS HV        +Y  L     +L   +G  + I+G+G   L  +     L+L +VL  
Sbjct: 427  ASHHVTHERNLYHTYKALDRTFVRL--PNGHTVKIEGTGFIQLTDA-----LSLHNVLFI 479

Query: 117  PQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQTGIPLMRCNSLGDLYPVT-------- 168
            P+   NL+SV  LT      V F      +      + L + + +G+LY +         
Sbjct: 480  PEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLVDV 539

Query: 169  PSVPFAGLAQS------LWHSRLGHPGSSALQSLRSNKFITYEHLNSPTV-CESCVFGKH 221
             S P   +  S      +WH RLGHP  + + +L     +  + +N  +  C  C   K 
Sbjct: 540  SSFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLPKQKINKDSSHCHVCHLSKQ 599

Query: 222  VRLPFVSSNNVTVMPFDILHSDLW---TSPVLSSAGHRYYVLFLDDFTDFLWTFPLSNKS 278
              LPF S N++    F+++H D W   + P + S  +RY++  +DDF+   W + L  KS
Sbjct: 600  KHLPFKSVNHIREKAFELVHIDTWGPFSVPTVDS--YRYFLTIVDDFSRATWIYLLKQKS 657

Query: 279  QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
             V  +F S    + T +   V  ++ DN  E     F+   A  G+     CP T  QN 
Sbjct: 658  DVLTVFPSFLKMVETQYHTKVCSVRSDNAHEL---KFNELFAKEGIKADHPCPETPEQNF 714

Query: 339  KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
              ERK + + N+ R L+  + +P  +W   +  A +L+N +    ++N +P + L +  P
Sbjct: 715  VVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERLTKGKP 774

Query: 399  SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
             Y+ L+ FGCLCY      +  K  PR+  C+FLGYP+ ++GYK  D+    + ISRHVI
Sbjct: 775  DYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYSVSISRHVI 834

Query: 459  FDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPAVTPSQLPTTSTS 518
            F E  FPFA+      S     +    P I      P P+    +P   + S  P     
Sbjct: 835  FYEDIFPFAS------SNITDAAKDFFPHIY----LPAPNNDEHLPLVQSSSDAPHNHDE 884

Query: 519  SSAS--PPSSPSP------PSPPQPVPPIRTMATRSMRGIYKPRKLFNLS-------VTI 563
            SS+    PS P        PS  Q         T +    Y      + S         I
Sbjct: 885  SSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSPYPLTNYISYSYLSEPFGAFI 944

Query: 564  DDPTISPLPKNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKT 623
            +  T + LP+    A  D  W  AM  E  A +R  TW +   P+    + C WI   K 
Sbjct: 945  NIITATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGKVAVGCKWIITIKF 1004

Query: 624  KANGCFERYKARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
             A+G  ER+KARLV  G +Q  G+D   TFSPV K  T++ +L++A
Sbjct: 1005 LADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLA 1050


>At1g48710 hypothetical protein
          Length = 1352

 Score =  267 bits (683), Expect = 2e-71
 Identities = 183/637 (28%), Positives = 303/637 (46%), Gaps = 54/637 (8%)

Query: 51  WYMDTGASSHVASSPGNLTSYSNLSH-LNQKLYVGSGQGIPIQGSGDTTLPTSHKHKPLT 109
           WY+D+GAS+H+    G  + ++ L   +   + +G    + ++G G+  +   +      
Sbjct: 335 WYLDSGASNHMC---GRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQF- 390

Query: 110 LSHVLHTPQIVKNLISVRQLTTDNNVSVCFDPYGFSVHDFQ----TGIPLM--RCNSLGD 163
           +S+V + P +  N++S+ QL  +    +       S+ D +    T +P+   R   L  
Sbjct: 391 ISNVYYIPSMKTNILSLGQLL-EKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNI 449

Query: 164 LYPVTPSVPFAGLAQS-LWHSRLGHPGSSALQSLRSNKFIT-YEHLNSPT-VCESCVFGK 220
              +   +      +S LWH R GH     L+ L   + +     +N P  VCE C+ GK
Sbjct: 450 RNDIAQCLKMCYKEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGK 509

Query: 221 HVRLPFVS-SNNVTVMPFDILHSDLWTSPVLSSAGH-RYYVLFLDDFTDFLWTFPLSNKS 278
             ++ F   S++      +++H+D+       S G   Y++LF+DDF+   W + L  KS
Sbjct: 510 QFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKS 569

Query: 279 QVFEMFTSLTHQIRTHFSHNVKCLQCDNGPEFDNTSFHAYCAAHGLIFRFSCPHTSSQNG 338
           +VFE+F      +       +K ++ D G EF +  F  YC  +G+  + + P +  QNG
Sbjct: 570 EVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNG 629

Query: 339 KAERKIRTINNMIRTLLAHASVPPSFWHHALQMATYLLNIIPRKSLSNLSPTQLLYRRDP 398
            AERK RTI  M R++L    +P   W  A+  A YLLN  P KS+S  +P +    R  
Sbjct: 630 VAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKS 689

Query: 399 SYTHLRVFGCLCYPLVPSTTINKLQPRSSPCVFLGYPLHHRGYKCFDLSHRKIIISRHVI 458
             +HLRVFG + +  VP    +KL  +S   +F+GY  + +GYK ++   +K IISR+++
Sbjct: 690 GVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIV 749

Query: 459 FDETRFPFATMPTPPPSTYDCFSDPIHPSIIHQWTSPDPSPTSVVPPAVTPSQLPTTSTS 518
           FDE               +D  S+    +    +   +P PT   PP+  P+  PT+ TS
Sbjct: 750 FDE------------EGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEPTTPPTSPTS 797

Query: 519 SSASPPSSPSPPSPPQPVPPIRTMATRSMRGIYKPRK------LFNLSVTIDDPTISPLP 572
           S     SS             RT   RS++ +Y+  +      LF L    +       P
Sbjct: 798 SQIEESSSE------------RTPRFRSIQELYEVTENQENLTLFCLFAECE-------P 838

Query: 573 KNPKLALSDPNWKSAMQSEFDALIRNKTWDLVPRPSDVNIIRCMWIFHHKTKANGCFERY 632
            + + A+    W++AM  E  ++ +N TW+L   P+    I   W++  K  + G  ERY
Sbjct: 839 MDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERY 898

Query: 633 KARLVGDGRSQIAGVDCDETFSPVVKPATIRTVLTIA 669
           KARLV  G  Q AG+D DE F+PV +  T+R ++++A
Sbjct: 899 KARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLA 935


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.329    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,110,603
Number of Sequences: 26719
Number of extensions: 1162476
Number of successful extensions: 14607
Number of sequences better than 10.0: 418
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 6299
Number of HSP's gapped (non-prelim): 2713
length of query: 1082
length of database: 11,318,596
effective HSP length: 110
effective length of query: 972
effective length of database: 8,379,506
effective search space: 8144879832
effective search space used: 8144879832
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 65 (29.6 bits)