BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0113.14
(584 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g31420 hypothetical protein 234 1e-61
At4g29090 putative protein 230 2e-60
At2g31520 putative non-LTR retroelement reverse transcriptase 229 4e-60
At2g25550 putative non-LTR retroelement reverse transcriptase 228 5e-60
At2g17910 putative non-LTR retroelement reverse transcriptase 221 9e-58
At2g45230 putative non-LTR retroelement reverse transcriptase 216 2e-56
At3g45550 putative protein 211 9e-55
At2g17610 putative non-LTR retroelement reverse transcriptase 204 1e-52
At2g01840 putative non-LTR retroelement reverse transcriptase 202 4e-52
At2g16680 putative non-LTR retroelement reverse transcriptase 199 4e-51
At1g47910 reverse transcriptase, putative 189 5e-48
At2g05200 putative non-LTR retroelement reverse transcriptase 186 2e-47
At2g15510 putative non-LTR retroelement reverse transcriptase 178 8e-45
At2g41580 putative non-LTR retroelement reverse transcriptase 176 3e-44
At4g09710 RNA-directed DNA polymerase -like protein 166 3e-41
At2g15540 putative non-LTR retroelement reverse transcriptase 159 4e-39
At1g24640 hypothetical protein 143 3e-34
At3g09510 putative non-LTR reverse transcriptase 139 6e-33
At3g32110 non-LTR reverse transcriptase, putative 136 3e-32
At4g10830 putative protein 119 4e-27
>At3g31420 hypothetical protein
Length = 1491
Score = 234 bits (596), Expect = 1e-61
Identities = 160/539 (29%), Positives = 247/539 (45%), Gaps = 41/539 (7%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWR-GNNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
+P Y+M I K K+ C +I S +ARFWW GN +G+HW W + K EGG+GFK+
Sbjct: 958 MPVYSMNIFKLTKEVCEEIDSLLARFWWSSGNETKGMHWFTWKRMSIPKKEGGLGFKELE 1017
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
N A L KQ W +LQ PN A VL+G YFP N ++A + R+AS+ W SI+HGR L+
Sbjct: 1018 NFNLALLGKQTWHLLQHPNCLMARVLRGRYFPETNVMNAVQGRRASFVWKSILHGRNLLK 1077
Query: 144 NQGRWSIEDGKSVNLLGHRWLACNERLREGPLDTTVSSLMENQTRTWSISKITSVLSLPD 203
R + DG +N WL PL + + + P+
Sbjct: 1078 KGLRCCVGDGSLINAWLDPWL---------PLHSPRAPYKQEDA--------------PE 1114
Query: 204 LGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWR 263
Q + T +D I W Y G YT+KS Y A L + G + +
Sbjct: 1115 -----QLLVCSTARDDLIGWHYTKDGMYTVKSAYWLA---THLPGTTGTHPPPGDIKLKQ 1166
Query: 264 SI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWL 323
+ + KIK F WKI+ A+ T LR RH ++ C C E + H+F C +
Sbjct: 1167 LLWKTKTAPKIKHFCWKILSGAIATGEMLRYRHINKQSICKRCCRDEETSQHLFFECDYA 1226
Query: 324 RPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGF-LLWGVWKMRNNG 382
+ W G+ P+ + LE K + + L F +LW +W+ RN
Sbjct: 1227 KATWRGAGL---PNLIFQDSIVTLEEKFRAMFTFNPSTTNYWRQLPFWILWRLWRSRNIL 1283
Query: 383 TFRGERPNPVLCLNLAVEASKEFL-LETTTEFL-PIYGGHVNR-GIRHWTRPPLGFLKCN 439
TF+ + + + LA + + E+ +E + + P+ H NR WTRP G+ KCN
Sbjct: 1284 TFQQKHIPWEVTVQLAKQDALEWQDIEDRVQVINPLSRRHSNRYAANRWTRPVCGWKKCN 1343
Query: 440 TDAGFLRVGNKAAGGYIFKDDKGCFV*GNH-RQLHAASALAAEALILREAVFAAMNLNMD 498
D + + N A G++ +D+ G F+ G + H +AL + L A+ + +
Sbjct: 1344 YDGSYSTIINSKA-GWVIRDEHGQFIGGGQAKGKHTNNALESALQALIIAMQSCWSHGHT 1402
Query: 499 RVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLAR 557
+V FE DN+ + + E + + ++ ++DI+ K F F W R N+ A LA+
Sbjct: 1403 KVCFEGDNIEVYQILNEGKARFDVYNWIRDIQAWKRRFQECRFLWINRRNNKPADTLAK 1461
>At4g29090 putative protein
Length = 575
Score = 230 bits (586), Expect = 2e-60
Identities = 173/580 (29%), Positives = 253/580 (42%), Gaps = 49/580 (8%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRGNND-RGIHWKNWASLMFSKAEGGMGFKDFA 83
LPTY MA PK C QI S +A FWWR + +G+HWK W L KAEGG+GFKD
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
N A L KQ WR+L P + A V K YF + L+A + S+ W SI +E++
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILR 122
Query: 144 NQGRWSIEDGKSVNLLGHRWL------ACNERLREGPLD-------TTVSSLMENQTRTW 190
R + +G+ + + H+WL A R P + VS L++ R W
Sbjct: 123 QGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREW 182
Query: 191 SISKITSVLSLPDLGRVLQTPIRLTEGE--DEIFWPYRDYGQYTIKSGYIQARSHKELEE 248
K + P++ R L +R D W Y G YT+KSGY
Sbjct: 183 --RKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRS 240
Query: 249 SRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEA 308
S S ++ I ++ KI+ FLWK + +LP L RH E++C C +
Sbjct: 241 SPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 309 PREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPI-----WLEA---KLSQLSNLESG 360
+E H+ C + R W +I S+PI W ++ L + NL +G
Sbjct: 301 CKETVNHLLFKCTFARLTW-----------AISSIPIPLGGEWADSIYVNLYWVFNLGNG 349
Query: 361 S---EQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIY 417
+ E+ + +LLW +WK RN FRG N L A + +E+ + T E
Sbjct: 350 NPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTK 409
Query: 418 GGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQL-HAAS 476
W PP ++KCNTDA + R + G++ +++KG R L S
Sbjct: 410 PQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKS 469
Query: 477 ALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDF 536
L AE +R AV + + V+FE+D+ LIE + ++D+++ F
Sbjct: 470 VLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLKPTIQDLQRLLSQF 529
Query: 537 PNWIFSWTRREGNECAHVLARLAL--------CRSIPPHW 568
F + REGN A +AR +L SI P W
Sbjct: 530 TEVKFVFIPREGNTLAERVARESLSFLNYDPKLYSIVPSW 569
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 229 bits (583), Expect = 4e-60
Identities = 168/572 (29%), Positives = 264/572 (45%), Gaps = 34/572 (5%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNW 65
+ + P+ K + +P YAM+ K PK +I S + FWW + +N RGI W W
Sbjct: 938 RFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAW 997
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
L +SK EGG+GF+D A N A LAKQAWR++Q PN+ +A V+K YF + + L AK +
Sbjct: 998 KRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVR 1057
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSV-----NLLGH---RWLACNERLREGPLDT 177
+Q S+ W S++ G L+ R I DG+++ N++ R L E +E
Sbjct: 1058 KQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKE----M 1113
Query: 178 TVSSLMENQTR--TWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKS 235
T+++L E + W SKI+ + D G + + + ++ D+I W Y G+YT++S
Sbjct: 1114 TINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1173
Query: 236 GYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRR 295
GY +H S + I + I K+K FLW+ + +AL T L R
Sbjct: 1174 GY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTR 1232
Query: 296 HCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIW---LEAKLS 352
+ CP C E H CP+ W+ S D S++ + E +S
Sbjct: 1233 GMRIDPICPRCHRENESINHALFTCPFATMAWWLS------DSSLIRNQLMSNDFEENIS 1286
Query: 353 QLSNL-----ESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLL 407
+ N S +L+ +L+W +WK RNN F R +P + A + ++L
Sbjct: 1287 NILNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLN 1344
Query: 408 ETTT-EFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV- 465
T + + P + W PP ++KCN DAGF +A GG+I ++ G +
Sbjct: 1345 ATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPIS 1404
Query: 466 *GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAI 525
G+ + H ++ L AE L A+ +V E D LI +
Sbjct: 1405 WGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANH 1464
Query: 526 VKDIRKCKLDFPNWIFSWTRREGNECAHVLAR 557
++DI F + F + RR+GN+ AHVLA+
Sbjct: 1465 LEDISFWANKFASIQFGFIRRKGNKLAHVLAK 1496
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 228 bits (582), Expect = 5e-60
Identities = 168/572 (29%), Positives = 264/572 (45%), Gaps = 34/572 (5%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNW 65
+ + P+ K + +P YAM+ K PK +I S + FWW + +N RGI W W
Sbjct: 1164 RFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAW 1223
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
L +SK EGG+GF+D A N A LAKQAWR++Q PN+ +A V+K YF + + L AK +
Sbjct: 1224 KRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVR 1283
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSV-----NLLGH---RWLACNERLREGPLDT 177
+Q S+ W S++ G L+ R I DG+++ N++ R L E +E
Sbjct: 1284 KQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEETYKE----M 1339
Query: 178 TVSSLMENQTR--TWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKS 235
T+++L E + W SKI+ + D G + + + ++ D+I W Y G+YT++S
Sbjct: 1340 TINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS 1399
Query: 236 GYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRR 295
GY +H S + I + I K+K FLW+ + +AL T L R
Sbjct: 1400 GY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTR 1458
Query: 296 HCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIW---LEAKLS 352
+ SCP C E H CP+ W S D S++ + E +S
Sbjct: 1459 GMRIDPSCPRCHRENESINHALFTCPFATMAWRLS------DSSLIRNQLMSNDFEENIS 1512
Query: 353 QLSNL-----ESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLL 407
+ N S +L+ +L+W +WK RNN F R +P + A + ++L
Sbjct: 1513 NILNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLN 1570
Query: 408 ETTT-EFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV- 465
T + + P + W PP ++KCN DAGF +A GG+I ++ G +
Sbjct: 1571 ATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPIS 1630
Query: 466 *GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAI 525
G+ + H ++ L AE L A+ +V E D LI +
Sbjct: 1631 WGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANH 1690
Query: 526 VKDIRKCKLDFPNWIFSWTRREGNECAHVLAR 557
++DI F + F + R++GN+ AHVLA+
Sbjct: 1691 LEDISFWANKFASIQFGFIRKKGNKLAHVLAK 1722
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 221 bits (563), Expect = 9e-58
Identities = 149/527 (28%), Positives = 245/527 (46%), Gaps = 22/527 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRG-NNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
LP Y M+ K PK C ++ + + FWW R IHW +W L K +GG GFKD
Sbjct: 778 LPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGFGFKDLQ 837
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LAKQAWR+LQE + ++ V + YF N +FL A + + S+AW SI+ GREL++
Sbjct: 838 CFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILFGRELLM 897
Query: 144 NQGRWSIEDGKSVNLLGHRWLACN------ERLREGPLDTTVSSLMENQTRTWSISKITS 197
R I +G+ + +WL R R +D VS L++ +R W+++ +
Sbjct: 898 QGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRD 957
Query: 198 VLSLPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGY--IQARSHKELEESRGATS 254
+ D+ +L Q P+ ED W + G Y++K+GY + + H L +
Sbjct: 958 LFPWKDVEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKP 1015
Query: 255 SEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAA 314
S S + I + KI++FLWK +H A+P + LR R S+ C +C+ E
Sbjct: 1016 SVNS--LFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETIN 1073
Query: 315 HVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLE-AKLSQLSNLESGSEQLISYLGFLLW 373
H+ CP R VW + L+ S S ++ ++L L+ L ++LW
Sbjct: 1074 HILFECPLARQVW--AITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILW 1131
Query: 374 GVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPL 433
+WK RN F G+ ++ A EA E+ T + + I W P
Sbjct: 1132 FLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQT----HMQNDEKHLKITKWCPPLP 1187
Query: 434 GFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAA-SALAAEALILREAVFAA 492
G LKCN + + + + ++ +D +G + + R + S +A+ A+ +
Sbjct: 1188 GELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWALESM 1247
Query: 493 MNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNW 539
+ + DRV+F + +I+A + E +L + ++ D P+W
Sbjct: 1248 THHHFDRVIFASSTHEIIQALHKPHEWPLLLGDISELLSFTKDKPHW 1294
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 216 bits (551), Expect = 2e-56
Identities = 167/611 (27%), Positives = 252/611 (40%), Gaps = 54/611 (8%)
Query: 3 RVERKIVKPSWKRNFDQGSGS---------GLPTYAMAILKFPKQFCHQIASQIARFWWR 53
R+ +K++ W+ NF G LPTY M+ K PK C QI S +A FWW+
Sbjct: 771 RLGKKVL--GWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWK 828
Query: 54 GNND-RGIHWKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGI 112
+ RG+HWK W L KA GG+GFK+ N A L KQ WR++ E ++ A V K
Sbjct: 829 NKKEGRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSR 888
Query: 113 YFPNENFLHAKKKRQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACN----- 167
YF + L+A + S+AW SI + LI R I +G+++N+ W+
Sbjct: 889 YFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAA 948
Query: 168 ERLREGPLDT--------TVSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGED 219
+ ++ L + V L+ R W+ + ++ + +L E D
Sbjct: 949 QAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRD 1008
Query: 220 EIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLW 279
W Y G Y++KSGY + ++ I +P KI FLW
Sbjct: 1009 RFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLW 1068
Query: 280 KIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPS 339
+ ++ L NL RH E SC C + E H+ CP+ R W S P
Sbjct: 1069 RCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGE 1128
Query: 340 ILSLPIWLEAKLSQLSNL---------ESGSEQLISYLGFLLWGVWKMRNNGTFRGERPN 390
W E+ + ++ ES LI + +LW +WK RN+ F+G
Sbjct: 1129 ------WAESLFRNMHHVLSVHKSQPEESDHHALIPW---ILWRLWKNRNDLVFKGREFT 1179
Query: 391 PVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNK 450
+ A E + E P W P G++KCNTD + +
Sbjct: 1180 APQVILKATEDMDAW--NNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGN 1237
Query: 451 AAGGYIFKDDKGCFV*GNHRQLHA-ASALAAEALILREAVFAAMNLNMDRVVFEADNLGL 509
G++ ++ G + R L + S L E LR AV + N RV+FE+D+ L
Sbjct: 1238 CGVGWVLRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYL 1297
Query: 510 IEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLARLAL--------C 561
+ + + + + ++DIR F F +TRREGN A AR +L
Sbjct: 1298 VSLIQNEMDIPSLAPRIQDIRNLLRHFEEVKFQFTRREGNNVADRTARESLSLMNYDPKM 1357
Query: 562 RSIPPHWCAHL 572
SI P W +L
Sbjct: 1358 YSITPDWIKNL 1368
>At3g45550 putative protein
Length = 851
Score = 211 bits (537), Expect = 9e-55
Identities = 143/459 (31%), Positives = 215/459 (46%), Gaps = 35/459 (7%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWW-RGNNDRGIHWKNW 65
K + P+ K + +P YAM+ K P+ +I S + FWW + +N RGI W W
Sbjct: 403 KFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAW 462
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
L +SK EGG+GF+D A N A LAKQAWRI+Q PN+ +A V+K YF + + + AK +
Sbjct: 463 KRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTR 522
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSVNL--------LGHRWLACNERLREGPLDT 177
Q S+ W+S++ G L+ R+ I DGK++ L R L +E+ LD
Sbjct: 523 SQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVVDSHPPRPLLTDEQHNGLSLDN 582
Query: 178 TVSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGY 237
+R W +K+ + + D + + + D + W Y G YT++SGY
Sbjct: 583 LFQH--RGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGY 640
Query: 238 IQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHC 297
+H S + I + I K+K FLW+I+ +ALPT L R
Sbjct: 641 -WLSTHDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGM 699
Query: 298 VSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDP----SILSLPIWLEAKLSQ 353
+ CP C E H CP+ W +L+ P SILS I E +S
Sbjct: 700 RIDPGCPRCRRENESINHALFTCPFATMAW-----RLSDTPLYRSSILSNNI--EDNISN 752
Query: 354 L-----SNLESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLE 408
+ + + S++LI + +LLW +WK RNN F R +P + + A + E+L
Sbjct: 753 ILLLLQNTTITDSQKLIPF--WLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNA 810
Query: 409 TTTE---FLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGF 444
T T+ LP G W +P + ++KCN DA F
Sbjct: 811 TQTQGPRRLP--KRTTAAGNTTWVKPQMPYIKCNFDASF 847
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 204 bits (519), Expect = 1e-52
Identities = 120/388 (30%), Positives = 186/388 (47%), Gaps = 8/388 (2%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWWRGNNDRG-IHWKNW 65
K++ P+ K + + +PTY+M+ P + HQI S + FWW + I W W
Sbjct: 237 KLLSPAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAW 296
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
+ L K GG+ +D N A LAKQ+WRILQ+P + A V K YFP E L AK
Sbjct: 297 SKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKAT 356
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACN-ERLREGPLDTTVSSLME 184
Q+S+AW SI+HG +LI ++ +G ++ L WL N R G D+ S L
Sbjct: 357 SQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKV 416
Query: 185 NQ---TRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQAR 241
+ W+ + ++ D+ + +T D I W Y G Y++KSGY R
Sbjct: 417 SDLLIEGRWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLR 476
Query: 242 SHKELEESRGATSSEPSKE-CWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSE 300
+ + + + +E S + + +I P KIK F W+ H ALPT NL+RR +++
Sbjct: 477 KLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITD 536
Query: 301 TSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESG 360
+C C ED H+ C + +W + +L P S++S L + L
Sbjct: 537 DTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNS--FNQNLESIQKLNQS 594
Query: 361 SEQLISYLGFLLWGVWKMRNNGTFRGER 388
+ + +S F+ W +WKMRN+ F +R
Sbjct: 595 ARKDVSLFPFIGWRIWKMRNDLIFNNKR 622
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 202 bits (514), Expect = 4e-52
Identities = 168/584 (28%), Positives = 247/584 (41%), Gaps = 49/584 (8%)
Query: 9 VKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWWRGNNDRGIHWKNWASL 68
+ P+ K + LP Y+M P C++I S I FWW N
Sbjct: 1146 LSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGKEN------------ 1193
Query: 69 MFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQA 128
EG +GFKD N+A LAKQAWRIL P + A + KG+Y+PN +L A K A
Sbjct: 1194 -----EGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHA 1248
Query: 129 SWAWNSIIHGRELILNQG-RWSIEDGKSVNLLGHRWL-ACNERLREGPL---DTTVSSLM 183
S+ WNSI G+ L+L QG R + DG++ + WL R GP+ D V+ L
Sbjct: 1249 SYGWNSIQEGK-LLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMKVADLW 1307
Query: 184 ENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSH 243
R W VL+ D + D W Y QYT++SGY A +H
Sbjct: 1308 RENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVA-TH 1366
Query: 244 KELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSC 303
L E E + I +I KIK F+W+ + AL T LR R+ ++ +C
Sbjct: 1367 VNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTC 1426
Query: 304 PICEAPREDAAHVFLHCPWLRPVWFGSFFQ-----LAPDPSILSLPIWLEAKLSQLSNLE 358
C E H+ C + + VW + F D ++ + L+ K +Q +
Sbjct: 1427 QRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPIL 1486
Query: 359 SGSEQLISYLGFLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYG 418
+G L+ + +++W +WK RN F+ P A + + E+ +ET I
Sbjct: 1487 NG---LMPF--WIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEW-VETMVNDTAISH 1540
Query: 419 GHVNRGIR------HWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQL 472
R W+ PP GFLKCN D+G+++ + + G+I +D G + +L
Sbjct: 1541 NTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKL 1600
Query: 473 HAA-SALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRK 531
+ SAL AEAL A+ V FE DNL L + + + ++ DIR
Sbjct: 1601 QQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHLLETLLYDIRF 1660
Query: 532 CKLDFPNWIFSWTRREGNECAHVLARLALCRS-------IPPHW 568
P + RE N A L + A S +PP W
Sbjct: 1661 WMTKLPFSSIGYVNRERNLAADKLTKYANSMSSLYETFHVPPRW 1704
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 199 bits (506), Expect = 4e-51
Identities = 151/568 (26%), Positives = 239/568 (41%), Gaps = 25/568 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRGNN-DRGIHWKNWASLMFSKAEGGMGFKDFA 83
LP Y M + PK C ++ S + FWW IHW L K+ GG GFKD
Sbjct: 752 LPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGFGFKDLQ 811
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LAKQAWR+ + + + + K YF N +FL+A++ + S+ W SI++GREL+
Sbjct: 812 CFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILYGRELLN 871
Query: 144 NQGRWSIEDGKSVNLLGHRWLACNERLREGPLDT------TVSSLMENQTRTWSISKITS 197
+ I +G+ N+ +WL R L + VS L++ TR W++ K+T
Sbjct: 872 GGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKLTE 931
Query: 198 VLSLPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSE 256
+ D+ ++ Q P L ED W + G YT+KSGY ++ + A
Sbjct: 932 LFHEKDVQLIMHQRP--LISSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYP 989
Query: 257 PSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
+ + S KIKVF+WK + AL + LR R + C C+ E H+
Sbjct: 990 SVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHL 1049
Query: 317 FLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVW 376
CP+ R VW S Q AP + + Q S + + +LLW +W
Sbjct: 1050 LFQCPFARQVWALSLIQ-APATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPWLLWEIW 1108
Query: 377 KMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPLGFL 436
K RN F+G + + +A +E L + G V+ W PP G L
Sbjct: 1109 KNRNKTLFQG---TGLTSSEIVAKAYEECNLWINAQ--EKSSGGVSPSEHKWNPPPAGEL 1163
Query: 437 KCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAVFAAM-NL 495
KCN + R A ++ +D G + + R +L + + +M +
Sbjct: 1164 KCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSYSQVYSLFDAKIKSWDWALESMDHF 1223
Query: 496 NMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVL 555
+ D+V F A + +I+A + E ++ + + D +W + N A +
Sbjct: 1224 HFDKVTFAATSHDIIKALHKPNEWPMLIGHIAEFLSFTKDISDWFMMMESTQCNNGAAEI 1283
Query: 556 ARLAL--------CRSIPPHWCAHLPQE 575
A+ + PHW L +E
Sbjct: 1284 AKSVITGMRWQSYVACSFPHWLRSLFEE 1311
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 189 bits (479), Expect = 5e-48
Identities = 145/557 (26%), Positives = 238/557 (42%), Gaps = 25/557 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRGNND-RGIHWKNWASLMFSKAEGGMGFKDFA 83
LP Y M+ + PK ++ S +A+FWW N D RG+HW W L SK++GG+GF++
Sbjct: 584 LPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVD 643
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
N A LAKQ WR++ P++ +A V KG YF N L + K S+ W S+I R L+
Sbjct: 644 DFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMISARSLVY 703
Query: 144 NQGRWSIEDGKSVNLLGHRWLACN----ERLREGPLDTT--VSSLMENQTRTWSISKITS 197
+ G S+++ W+ + +D + V SL+++++ W+I +
Sbjct: 704 KGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKE 763
Query: 198 VLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEP 257
+ D+ + PI ED + W + G YT+KSGY AR L+ + G T P
Sbjct: 764 LFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTAR----LDLNEGTTLIGP 819
Query: 258 SKECWRS-I*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
++ I + P K++ FLW+I+ +P NLR+R + + C C A E H
Sbjct: 820 DLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHT 879
Query: 317 FLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVW 376
C R +W + Q+ P I + SG + + +++W +W
Sbjct: 880 LFQCHPARQIW--ALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDS--APYPWIIWYIW 935
Query: 377 KMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTR-----P 431
K RN F +P+ L LAV+ ++ + E E G ++ R R
Sbjct: 936 KARNEKVFENVDKDPMEILLLAVKEAQSW-QEAQVELHSERHGSLSIDSRIRVRDVSQDT 994
Query: 432 PLGFLKCNTDAGFLRVGNKAAGGYIFKDDKG-CFV*GNHRQLHAASALAAEALILREAVF 490
+C D + + G+ G G + S L E L A+
Sbjct: 995 TFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAMK 1054
Query: 491 AAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNE 550
+ + V F D L++ E +++++ + +F N+ S R N
Sbjct: 1055 CMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVYLEELQSDREEFTNFSLSLISRSANV 1114
Query: 551 CAHVLARLALCRSIPPH 567
A LAR R++P H
Sbjct: 1115 KADKLAR--KIRTVPHH 1129
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 186 bits (473), Expect = 2e-47
Identities = 155/556 (27%), Positives = 247/556 (43%), Gaps = 52/556 (9%)
Query: 23 SGLPTYAMAILKFPKQFCHQIASQIARFWWRGNND-RGIHWKNWASLMFSKAEGGMGFKD 81
+ +P Y+M+ K P C +I S + RFWW D R W W+ L K GG+GF+D
Sbjct: 693 ASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRD 752
Query: 82 FAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGREL 141
N + LAK WR+L P + + +L G Y + +F+ K Q S W SII GRE+
Sbjct: 753 IERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGREI 812
Query: 142 ILNQGRWSIEDGKSVNLLGHRWLACNERLRE-GPL-----DTTVSSLMENQTRTWSISKI 195
+ W I +G+ V++ WL+ ++ L GP D VS+L+ T W +KI
Sbjct: 813 LKEGLGWLITNGEKVSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKI 872
Query: 196 TSVLSLPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATS 254
+ LP+ ++ Q P + G D++ W GQYT +SGY A S +
Sbjct: 873 AVI--LPNYENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIA--------SVASIP 922
Query: 255 SEPSKECWRS-I*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDA 313
++ W+S + + KIK +WK EALP + L RRH +C C AP E
Sbjct: 923 IPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCGAP-EST 981
Query: 314 AHVFLHCPWLRPVWFGSFFQLAP--DPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFL 371
H+F HC + VW +LAP + ++ L+A LS L ++
Sbjct: 982 THLFFHCEFAAQVW-----ELAPLQETTVPPGSSMLDA-LSLLKKAIILPPTGVTSAALF 1035
Query: 372 LWGVWKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRP 431
W GT + LA ++++ L +T PI V R
Sbjct: 1036 PWICGIYGKLGTM-----TRAILDALAWQSAQRCLPKTRNVVHPISQLPVLRS------- 1083
Query: 432 PLGFLKCNTDAGFLRVGNKAAGGYIFKD------DKGCFV*GNHRQLHAASALAAEALIL 485
G+ C DA ++ + A G++F+ + + G R SAL+AEA +
Sbjct: 1084 --GYF-CFVDAAWIAQSSLAGSGWVFQSATALEKETATYSAGCRR---LPSALSAEAWAI 1137
Query: 486 REAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTR 545
+ A+ A+ L ++ +D+ +++A EI ++ +IR ++ F + F++
Sbjct: 1138 KSALLHALQLGRTDLMVLSDSKSVVDALTSNISINEIYGLLMEIRALRVSFHSLCFNFIS 1197
Query: 546 REGNECAHVLARLALC 561
R N A A+L+ C
Sbjct: 1198 RSANAIADATAKLSFC 1213
>At2g15510 putative non-LTR retroelement reverse transcriptase
Length = 1138
Score = 178 bits (451), Expect = 8e-45
Identities = 138/503 (27%), Positives = 224/503 (44%), Gaps = 21/503 (4%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRG-NNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
+ YAM+ K K C + S ++ FWW + R HW +W L +K GG+GF+D
Sbjct: 576 MQVYAMSCFKLTKTTCKNLTSAMSDFWWNALEHKRKTHWVSWEKLCLAKESGGLGFRDIE 635
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LAKQ+WRILQ P+ +A K YF +E FL A + S+A SI+ GREL+
Sbjct: 636 SFNQALLAKQSWRILQYPSFLFARFFKSRYFDDEEFLEADLGVRPSYACCSILFGRELLA 695
Query: 144 NQGRWSIEDGKSVNLLGHRWL------ACNERLREGPLDTTVSSLMENQTRTWSISKITS 197
R + +GKS+N+ W+ +R LD V+ L+ + R W +
Sbjct: 696 KGLRKEVGNGKSLNVWMDPWIFDIAPRLPLQRHFSVNLDLKVNDLINFEDRCWKRDLLEE 755
Query: 198 VLSLPDLGRVL-QTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSE 256
+ D+ + + P+ +D W + G+Y++KSGY A +L+ + A
Sbjct: 756 LFYPTDVELITKRNPV--VNMDDFWVWLHAKTGEYSVKSGYWLAFQSNKLDLIQQANLLP 813
Query: 257 PSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
+ + S + KIK+FLW+I+ ALP + RR + C IC E HV
Sbjct: 814 STNGLKEQVWSTKSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTNHV 873
Query: 317 FLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAK-LSQLSNLESGSEQLISYLGFLLWGV 375
C R VW S P+ + I+ + L +L + + + ++LW +
Sbjct: 874 LFTCSMARQVWALSGVP-TPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLWRL 932
Query: 376 WKMRNNGTFRGERPNPVLCLNLAVEASKEFL--LETTTEFLPIYGGHVNRGI---RHWTR 430
WK RN F G P LN V+ ++ L + ++ R I W
Sbjct: 933 WKNRNKLFFDGITFCP---LNSIVKIQEDTLEWFQAQSQIRVSESEEGQRVIPFTHSWEP 989
Query: 431 PPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEAL-ILREAV 489
PP G++KCN + + G ++ +D+ G + + R + S +L + A+
Sbjct: 990 PPEGWVKCNIGSAWSGKKKVCGGAWVLRDEHGSVILHSRRAFNGCSNKKEASLRCIFWAI 1049
Query: 490 FAAMNLNMDRVVFEADNLGLIEA 512
+ + + RV+F + L+ A
Sbjct: 1050 DSMRSHRVSRVLFAFEPGDLLSA 1072
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 176 bits (446), Expect = 3e-44
Identities = 143/543 (26%), Positives = 237/543 (43%), Gaps = 21/543 (3%)
Query: 26 PTYAMAILKFPKQFCHQIASQIARFWWRGNNDRG-IHWKNWASLMFSKAEGGMGFKDFAV 84
P YAM + K C ++ S + FWW D+ IHW LM K GG GFKD
Sbjct: 530 PVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGGFGFKDLQC 589
Query: 85 LNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELILN 144
NQA LAKQA R+ + ++ + +LK Y+ N +FL A K + S+AW SI++GREL+++
Sbjct: 590 FNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSILYGRELLVS 649
Query: 145 QGRWSIEDGKSVNLLGHRWLACNERLREGPL------DTTVSSLMENQTRTWSISKITSV 198
+ I +G++ + W+ ++ R L VS L++ +R W+++ + +
Sbjct: 650 GLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLIDPFSRNWNLNMLRDL 709
Query: 199 LSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGY--IQARSHKEL-EESRGATSS 255
++ + Q + +D W ++G YT+KS Y + HK++ +E+ S
Sbjct: 710 FPWKEIQIICQQR-PMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVHKQMFKEAEEQPSL 768
Query: 256 EPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAH 315
P + I + KIKVFLWK++ A+ + LR R + E C +C E H
Sbjct: 769 NP---LFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSMCPEKNETLNH 825
Query: 316 VFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGV 375
+ CP R VW + Q S+ + + N E S L +++W +
Sbjct: 826 ILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTEL-SPHLRYVSPWIIWIL 884
Query: 376 WKMRNNGTFRGERPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWTRPPLGF 435
WK RN F G + + A+E KE+L I + + W P +
Sbjct: 885 WKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHEL----ICSKEPTKDLT-WIPPLMNE 939
Query: 436 LKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQL-HAASALAAEALILREAVFAAMN 494
LKCN + + A ++ ++ KG + + +S A+ AV +
Sbjct: 940 LKCNIGIAWSKKHQMAGVSWVVRNWKGRVLLHSRCSFSQISSHFDAKIKGWNYAVESMDQ 999
Query: 495 LNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHV 554
DRV F A +I+A + + + A + D+ D W + NE A
Sbjct: 1000 FKFDRVTFGASTHDIIKAMHKPNQWPALRAQIDDLLMRAKDKELWFMAMEPHHCNEGASE 1059
Query: 555 LAR 557
+A+
Sbjct: 1060 IAK 1062
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 166 bits (421), Expect = 3e-41
Identities = 154/576 (26%), Positives = 247/576 (42%), Gaps = 58/576 (10%)
Query: 12 SWKRNFDQGSG---------SGLPTYAMAILKFPKQFCHQIASQIARFWWRGNND-RGIH 61
SW F +G S +P+YAM K P C QI S + RFWW D R +
Sbjct: 719 SWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMA 778
Query: 62 WKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLH 121
W +W L EGG+GF++ AK +WRIL+EP++ + VL G Y +F+
Sbjct: 779 WVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMD 831
Query: 122 AKKKRQ-ASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLA-CNERLREGP----- 174
AS W I+ GR+L+ WSI G S+N+ WL+ + + GP
Sbjct: 832 CSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETN 891
Query: 175 LDTTVSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIK 234
D +V L+ + ++W++ I L + ++ + I +D + W G+YT K
Sbjct: 892 KDLSVHDLICHDVKSWNVEAIRKHLPQYE-DQIRKITINALPLQDSLVWLPVKSGEYTTK 950
Query: 235 SGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRR 294
+GY A+ + +S+ ++I K+K FLWK M ALP L R
Sbjct: 951 TGYALAKLN-------SFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSR 1003
Query: 295 RHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPSILSLPIWLEAKLSQL 354
R+ +E +C C E + H+ L CP+ + VW +LAP +L P EA S +
Sbjct: 1004 RNIEAEVTCKRC-GQTESSLHLMLLCPYAKKVW-----ELAP---VLFNP--SEATHSSV 1052
Query: 355 SNLESGSEQLISY----LG------FLLWGVWKMRNNGTFRGERPNPVLCLNLAVEASKE 404
+ L ++++++ LG +LLW +WK RN F + L ++A +
Sbjct: 1053 ALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEE---GLVLKAILD 1109
Query: 405 FLLETTTEFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCF 464
+ L + ++ P L C DA + G G ++ K
Sbjct: 1110 ARAWMEAQLLIHHPSPISD--YPSPTPNLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKI 1167
Query: 465 V*GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNLGLIEACREQREKGEILA 524
SAL AE L + A+ A++ + ++ +D LI + E+
Sbjct: 1168 KENQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLLNSGKSIVELRG 1227
Query: 525 IVKDIRKCKLDFPNWIFSWTRREGNECAHVLARLAL 560
++ DIR+ + F + F + R N A LA+ AL
Sbjct: 1228 LLHDIRELSVSFTHLCFFFIPRLSNVVADSLAKSAL 1263
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 159 bits (402), Expect = 4e-39
Identities = 134/542 (24%), Positives = 224/542 (40%), Gaps = 38/542 (7%)
Query: 42 QIASQIARFWWRGNND-RGIHWKNWASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQE 100
+++S +A FWW+ + GIHW W L ++GG+GF+ N LAKQ WR+++
Sbjct: 697 KLSSVVANFWWKTREESNGIHWIAWDKLCTPFSDGGLGFRTLEEFNLVLLAKQLWRLIRF 756
Query: 101 PNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLG 160
PN+ + VL+G YF + + K + S+ W SI+ + L+L+ R +I G +
Sbjct: 757 PNSLLSRVLRGRYFRYSDPIQIGKANRPSFGWRSIMAAKPLLLSGLRRTIGSGMLTRVWE 816
Query: 161 HRWL------ACNERLREGPLDTTVSSLMENQTRTWSISKITSVLSLPDLGRVLQTPIRL 214
W+ L V+ L++ T+ W + ++ ++ D+ +L
Sbjct: 817 DPWIPSFPPRPAKSILNIRDTHLYVNDLIDPVTKQWKLGRLQELVDPSDIPLILGIRPSR 876
Query: 215 TEGEDEIFWPYRDYGQYTIKSGYIQARSHKELE---ESRGATSSEPSKECWRSI*SARIP 271
T D+ W + G YT+KSGY AR +G + S + W+ +
Sbjct: 877 TYKSDDFSWSFTKSGNYTVKSGYWAARDLSRPTCDLPFQGPSVSALQAQVWK----IKTT 932
Query: 272 HKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSF 331
K K F W+ + L T L RH +E CP C A E H+ CP R +W
Sbjct: 933 RKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIW---- 988
Query: 332 FQLAPDPSI------LSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGVWKMRNNGTFR 385
L+P PS SL + LS+ + +E ++ ++LW +WK RN F
Sbjct: 989 -ALSPIPSSEYIFPRNSLFYNFDFLLSRGKEFDI-AEDIMEIFPWILWYIWKSRNRFIFE 1046
Query: 386 GERPNPVLCLNLAVEASKEF----LLETTTEFLPIYGGHVNRGIRHWTRPPLGFLKCNTD 441
+P + L+ A++ + + E TE+ P N PP + C D
Sbjct: 1047 NVIESPQVILDFAIQEANVWKQANSKEVATEYPPPQVVPAN-------LPPTRNV-CQFD 1098
Query: 442 AGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAVFAAMNLNMDRVV 501
A + + G++ D + G + S L AE L A+ ++L +
Sbjct: 1099 ASWHLKDTLSGHGWVLVDQDIVLLLGLKSARKSLSPLHAEVDSLLWAMECMISLGVSDCS 1158
Query: 502 FEADNLGLIEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLARLALC 561
F +D+ I E +A + FP++ + R N A L++ A
Sbjct: 1159 FASDSADFISLLENPSEWPTFVAELATFSSLVCFFPSFSIKFFSRIYNVRADCLSKKARA 1218
Query: 562 RS 563
R+
Sbjct: 1219 RN 1220
>At1g24640 hypothetical protein
Length = 1270
Score = 143 bits (360), Expect = 3e-34
Identities = 107/371 (28%), Positives = 165/371 (43%), Gaps = 36/371 (9%)
Query: 25 LPTYAMAILKFPKQFCHQIASQIARFWWRG-NNDRGIHWKNWASLMFSKAEGGMGFKDFA 83
+P +AM+ K P C + S +A FWW ++ R IHW++W L K GG+GF+D
Sbjct: 763 MPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQ 822
Query: 84 VLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWAWNSIIHGRELIL 143
NQA LAKQAWR+L P+ + +LK YF +FL A ++ S+ W SI+ GREL+
Sbjct: 823 SFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLS 882
Query: 144 NQGRWSIEDGKSVNLLGHRWLACN---ERLREGPL-DTT--VSSLMENQTRTWSISKITS 197
+ + DG S+ + W+ N R+ + D T V +L+ +T W +
Sbjct: 883 KGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLHD 942
Query: 198 VLSLPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEP 257
+ D+ R+ +++ D W G +++KS Y A K + R S +P
Sbjct: 943 LFLPEDILRIKAIKPVISQA-DFFVWKLNKSGDFSVKSAYWLAYQTKS-QNLRSEVSMQP 1000
Query: 258 SKECWRS-I*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHV 316
S ++ + + + KIK+FLWK +C E H
Sbjct: 1001 STLGLKTQVWNLQTDPKIKIFLWK------------------------VCGELGESTNHT 1036
Query: 317 FLHCPWLRPVWFGSFFQLAPDP-SILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLWGV 375
CP R +W S + PD S S+ + L N E L ++LW +
Sbjct: 1037 LFLCPLSRQIWALSDYPFPPDGFSNGSIYSNINHLLENKDNKE-WPINLRKIFPWILWRI 1095
Query: 376 WKMRNNGTFRG 386
WK RN+ F G
Sbjct: 1096 WKNRNSFIFEG 1106
>At3g09510 putative non-LTR reverse transcriptase
Length = 484
Score = 139 bits (349), Expect = 6e-33
Identities = 125/468 (26%), Positives = 204/468 (42%), Gaps = 31/468 (6%)
Query: 109 LKGIYFPNENFLHAKKKRQASWAWNSIIHGRELILNQGRWSIEDGKSVNLLGHRWLACNE 168
+K YF + + L AK ++Q S+ W S++ G L+ R I DG+++ + G + +
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRI-GLDNIVDSH 59
Query: 169 RLREGPLDT-------TVSSLMENQTRT--WSISKITSVLSLPDLGRVLQTPIRLTEGED 219
R PL+T T+++L E + W SKI+ + D G + + + ++ D
Sbjct: 60 PPR--PLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPD 117
Query: 220 EIFWPYRDYGQYTIKSGYIQARSHKELEESRGATSSEPSKECWRSI*SARIPHKIKVFLW 279
+I W Y G+YT++SGY +H S + I + I K+K FLW
Sbjct: 118 KIIWNYNTTGEYTVRSGY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 176
Query: 280 KIMHEALPTKVNLRRRHCVSETSCPICEAPREDAAHVFLHCPWLRPVWFGSFFQLAPDPS 339
+ + +AL T L R + SCP C E H CP+ W S D S
Sbjct: 177 RALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLS------DSS 230
Query: 340 ILSLPIW---LEAKLSQLSNL-----ESGSEQLISYLGFLLWGVWKMRNNGTFRGERPNP 391
++ + E +S + N S +L+ +L+W +WK RNN F R +P
Sbjct: 231 LIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESP 288
Query: 392 VLCLNLAVEASKEFLLETTT-EFLPIYGGHVNRGIRHWTRPPLGFLKCNTDAGFLRVGNK 450
+ A + ++L T + + P + W PP ++KCN DAGF +
Sbjct: 289 SKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLE 348
Query: 451 AAGGYIFKDDKGCFV-*GNHRQLHAASALAAEALILREAVFAAMNLNMDRVVFEADNLGL 509
A GG+I ++ G + G+ + H ++ L AE L A+ +V E D L
Sbjct: 349 ATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTL 408
Query: 510 IEACREQREKGEILAIVKDIRKCKLDFPNWIFSWTRREGNECAHVLAR 557
I + ++DI F + F + RR+GN+ AHVLA+
Sbjct: 409 INLINGISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLAHVLAK 456
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 136 bits (343), Expect = 3e-32
Identities = 135/577 (23%), Positives = 239/577 (41%), Gaps = 40/577 (6%)
Query: 28 YAMAILKFPKQFCHQIASQIARFWWRGNNDRGI-HWKNWASLMFSKAEGGMGFKDFAVLN 86
+ M+ +K P+ + F W ++ H W + + EGG+G + +N
Sbjct: 1342 HTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGLGIRSATAMN 1401
Query: 87 QACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKKRQASWA--WNSIIHG-RELIL 143
+A +AK WR+L + ++ WA V++ Y + +++W+ W S+ G R++I
Sbjct: 1402 KALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTVAKSNWSSTWRSVGVGLRDVIW 1461
Query: 144 NQGRWSIEDGKSVNLLGHRWLACNERLREGPLDTTVSSLM------ENQTRTWSISKITS 197
+ W I DG+ + RWL+ + + +++ ++ W +S+I
Sbjct: 1462 REQHWVIGDGRQIRFWTDRWLSETPIADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAP 1521
Query: 198 VLS---LPDLGRVLQTPIRLTEGEDEIFWPYRDYGQYTIKSGYIQARSHKELEESRGATS 254
++ DL V+ + T D + W G++T+KS + + ++S
Sbjct: 1522 FVTDNKRLDLLAVIVDSV--TGAHDRLAWGMTSDGRFTVKSAFAMLTN----DDSPRQDM 1575
Query: 255 SEPSKECWRSI*SARIPHKIKVFLWKIMHEALPTKVNLRRRHCVSETSCPICEAPREDAA 314
S W+ + P +++VFLW ++++A+ T +RRH C +C E
Sbjct: 1576 SSLYGRVWK----VQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESIL 1631
Query: 315 HVFLHCPWLRPVWFGSF-FQLAPDPSILSLPIWLEAKLSQLSNLESGSEQLISYLGFLLW 373
HV CP + +W +L +SL WL + L Q + GS+ + + W
Sbjct: 1632 HVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQ-GLMTEGSDWSTMFAMAVWW 1690
Query: 374 GVWKMRNNGTFRGE----RPNPVLCLNLAVEASKEFLLETTTEFLPIYGGHVNRGIRHWT 429
G WK R + F GE R +LAVE S + E L + G VN+ IR WT
Sbjct: 1691 G-WKWRCSNIF-GENKTCRDRVRFIKDLAVEVSIAYSREVE---LRLSGLRVNKPIR-WT 1744
Query: 430 RPPLGFLKCNTDAGFLRVGNKAAGGYIFKDDKGCFV*GNHRQLHAASALAAEALILREAV 489
P G+ K NTD A+ G + ++ G + G + SA AE + +
Sbjct: 1745 PPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELWGVYYGL 1804
Query: 490 FAAMNLNMDRVVFEADNLGLIEACREQREKGEILAIVKDIRKC-KLDFPNWI--FSWTRR 546
+ A + + E D+ ++ + + L+ + +R C +W S R
Sbjct: 1805 YMAWAKQLTHLELEVDSEVVVGFLKTGIGETHPLSFL--VRLCHNFLSKDWTVRISHVYR 1862
Query: 547 EGNECAHVLARLALCRSIPPHWCAHLPQELSTTINRD 583
E N A LA A S+ H +P L ++ D
Sbjct: 1863 EANSLADGLANHAFSLSLGLHVFDEIPISLVMLLSED 1899
>At4g10830 putative protein
Length = 1294
Score = 119 bits (299), Expect = 4e-27
Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 7 KIVKPSWKRNFDQGSGSGLPTYAMAILKFPKQFCHQIASQIARFWWRGN-NDRGIHWKNW 65
K + P+ K + +P YAM+ K P +I + + FWW N R I W W
Sbjct: 1144 KYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAW 1203
Query: 66 ASLMFSKAEGGMGFKDFAVLNQACLAKQAWRILQEPNAFWASVLKGIYFPNENFLHAKKK 125
L +SK EGG+GF+D A N A LAKQ WR++ PN+ +A ++K YF ++ L AK++
Sbjct: 1204 KRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQ 1263
Query: 126 RQASWAWNSIIHGRELILNQGRWSIEDGKSV 156
R S+ W S++ G ++I R+ + DGK+V
Sbjct: 1264 RYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.138 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,133,244
Number of Sequences: 26719
Number of extensions: 618078
Number of successful extensions: 1916
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1598
Number of HSP's gapped (non-prelim): 152
length of query: 584
length of database: 11,318,596
effective HSP length: 105
effective length of query: 479
effective length of database: 8,513,101
effective search space: 4077775379
effective search space used: 4077775379
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0113.14