BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0111a.1
(863 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45230 putative non-LTR retroelement reverse transcriptase 529 e-150
At2g17910 putative non-LTR retroelement reverse transcriptase 523 e-148
At4g09710 RNA-directed DNA polymerase -like protein 507 e-144
At2g31520 putative non-LTR retroelement reverse transcriptase 505 e-143
At1g47910 reverse transcriptase, putative 503 e-142
At2g25550 putative non-LTR retroelement reverse transcriptase 502 e-142
At2g16680 putative non-LTR retroelement reverse transcriptase 482 e-136
At3g45550 putative protein 481 e-135
At2g01840 putative non-LTR retroelement reverse transcriptase 472 e-133
At2g05200 putative non-LTR retroelement reverse transcriptase 471 e-133
At3g31420 hypothetical protein 470 e-132
At2g41580 putative non-LTR retroelement reverse transcriptase 466 e-131
At1g24640 hypothetical protein 459 e-129
At2g17610 putative non-LTR retroelement reverse transcriptase 408 e-114
At2g11240 pseudogene 395 e-110
At4g10830 putative protein 390 e-108
At3g32110 non-LTR reverse transcriptase, putative 390 e-108
At2g31080 putative non-LTR retroelement reverse transcriptase 376 e-104
At4g15590 reverse transcriptase like protein 324 1e-88
At2g05980 putative non-LTR retroelement reverse transcriptase 248 1e-65
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 529 bits (1363), Expect = e-150
Identities = 295/862 (34%), Positives = 457/862 (52%), Gaps = 33/862 (3%)
Query: 1 SFFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRL 60
+FF+ G + +N+T + L+PK+ K E + RPIS CN +YKVI K++ N+LK + L
Sbjct: 473 AFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSL 532
Query: 61 ATQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKAC 120
++ Q+AF+ GR I DNILIAHE H L + K EF+AIK +++KAYDR+EW FL+
Sbjct: 533 ISETQAAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKA 592
Query: 121 LTSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMS 180
+ GF++ W+ IM+CV ++ +NG ++P RG+RQG PLSPYLFV+ E +
Sbjct: 593 MRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLV 652
Query: 181 HLLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQ 240
+L A+++ +I GL++A PPI+HLLFADDS+F+ K N E Q+I I+ +Y+LASGQ
Sbjct: 653 KMLQSAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQ 712
Query: 241 MISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRV 300
++ KS I F ++ + + L + G YLGLP + S+ TL+++K R+
Sbjct: 713 RVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRL 772
Query: 301 LDKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGK 360
K+ GW+ L+ GKE+L+KAV A+ YTMS + P+ CQ I + +A FWW++ +
Sbjct: 773 GKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKE 832
Query: 361 ERGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPN 420
RG+HWK W +S+ K GGLGFK+ N+ALL KQ WR+ T+ D+L + K YF
Sbjct: 833 GRGLHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSK 892
Query: 421 SSFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPE--- 477
S L + +R S+ W+SI + + +K+ +IG+G + VW D W+ + +A +
Sbjct: 893 SDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVK 952
Query: 478 --------AGDAELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCW 529
A ++ V L+LPD + WN + FP + + + D+ W
Sbjct: 953 RSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTW 1012
Query: 530 PHTKDGEYTVKTGYQVAYSLKEQARGPQPHILN---DPIWNQIWGIQVP*KIKMFLWKAC 586
+++ G Y+VK+GY V + Q PQ +L DPI+ QIW + VP KI FLW+
Sbjct: 1013 EYSRSGHYSVKSGYWVMTEIINQRNNPQ-EVLQPSLDPIFQQIWKLDVPPKIHHFLWRCV 1071
Query: 587 NEALPVKASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSL 646
N L V ++L RH+A + C C E+V HLL CP+ R W S L
Sbjct: 1072 NNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAP------- 1124
Query: 647 TVKDWLTQL------VIRLQENSEDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTT 700
+W L V+ + ++ + S ++ + LW +WK RN+ F+ R
Sbjct: 1125 PGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVI 1184
Query: 701 IRIRASMLNGMEDNTPSPIPTQGRKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVV 760
++ M P P T + +W P +K N D + K+ + V
Sbjct: 1185 LKATEDMDAWNNRKEPQPQVTSSTRDRC-VKWQPPSHGWVKCNTDGAWSKDLGNCGVGWV 1243
Query: 761 VFDEKGTNVLSHSKTIWA-ASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRE 819
+ + G + + + + S L E A+R A+L ++ SD LVSLI
Sbjct: 1244 LRNHTGRLLWLGLRALPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLI-- 1301
Query: 820 RRTDWKVEAVLRDIQD*RNLFR 841
+ + + ++ IQD RNL R
Sbjct: 1302 -QNEMDIPSLAPRIQDIRNLLR 1322
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 523 bits (1346), Expect = e-148
Identities = 305/848 (35%), Positives = 468/848 (54%), Gaps = 30/848 (3%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ G LP N T + L+PK+ P+ + LRPIS C+ LYK+I+KIL +LK H+ +
Sbjct: 452 FFETGVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIV 511
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ QSAF+ R I DNIL+AHE H L+ + E MA K +M+KAYDR+EW FL+ +
Sbjct: 512 STTQSAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMM 571
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
T+ GF+ KW+ IM CVT S+ +NG+ ++P RGIRQG PLSP LFVL E + H
Sbjct: 572 TALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIH 631
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
+L KA++ G+I G++ + + HLLFADD+L KA ++E +L+ L+ Y SGQM
Sbjct: 632 ILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQM 691
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I++ KS I F +N K I S +S GKYLGLP S+ + +IK ++
Sbjct: 692 INLNKSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQ 751
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
++ GW K L+Q GKEVL+K++ A+ Y MS + P+N CQ + + FWW S ++
Sbjct: 752 SRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQK 811
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
R IHW W ++ K +GG GFKD N ALLAKQAWR+ + +L+ R + YF NS
Sbjct: 812 RKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNS 871
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSD----QVLQAPE 477
FL + R +R S+ W+SIL G+E L + +IG+G + VW DKW+ D + L
Sbjct: 872 DFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRR 931
Query: 478 AGDAELTVNSLILPDVKQWNLPKLLSTFP-RQIAFKVFQIPLSLTQVPDKLCWPHTKDGE 536
+ +L V+ LI P + WNL L FP + + + Q PL + D CW H+ +G
Sbjct: 932 FINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFKE--DSFCWLHSHNGL 989
Query: 537 YTVKTGY-----QVAYSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALP 591
Y+VKTGY QV + L ++A+ +P + + ++++IW + KI++FLWKA + A+P
Sbjct: 990 YSVKTGYEFLSKQVHHRLYQEAK-VKPSV--NSLFDKIWNLHTAPKIRIFLWKALHGAIP 1046
Query: 592 VKASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDW 651
V+ L R I D C +C+ + E++ H+L CP R VW + L + S +V
Sbjct: 1047 VEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAG-SEFSNSVYTN 1105
Query: 652 LTQLVIRLQENSEDLSRGLTIVA-YYLWGIWKERNECHFQQRPPDPLGTTIRIRASMLNG 710
+++L+ Q+N DL L V+ + LW +WK RN F+ + + TT+ +A
Sbjct: 1106 MSRLIDLTQQN--DLPHHLRFVSPWILWFLWKNRNALLFEGK--GSITTTLVDKA--YEA 1159
Query: 711 MEDNTPSPIPTQGRKPNYQ-ARWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKGTNV 769
+ + Q + + + +W P P LK N+ + K+ + VV D +G V
Sbjct: 1160 YHEWFSAQTHMQNDEKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQG-KV 1218
Query: 770 LSHSKTIW--AASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRERRTDWKVE 827
L HS+ + SP +A+ + AL + ++ S ++ + + +W +
Sbjct: 1219 LLHSRRSFNEVHSPYSAKIRSWEWALESMTHHHFDRVIFASSTHEIIQALHKPH-EWPL- 1276
Query: 828 AVLRDIQD 835
+L DI +
Sbjct: 1277 -LLGDISE 1283
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 507 bits (1306), Expect = e-144
Identities = 319/881 (36%), Positives = 460/881 (52%), Gaps = 54/881 (6%)
Query: 1 SFFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRL 60
SFF + L P +NET V L+PK+ P + RPI+ CN YK++ KIL +L+P ++ L
Sbjct: 414 SFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSEL 473
Query: 61 ATQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKAC 120
+ QSAF+ GR I DN+LI HE HFL+ + K MAIK +M+KAYDR++W+FL+
Sbjct: 474 ISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEV 533
Query: 121 LTSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMS 180
L GF +KW+ +MQCV S+ F +NG VVP RG+RQG PLSPYLF+L E +S
Sbjct: 534 LMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLS 593
Query: 181 HLLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQ 240
L KAQE+G + G+R+A P + HLLFADD++FF K N L +IL Y LASGQ
Sbjct: 594 GLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQ 653
Query: 241 MISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRV 300
I++ KS I FS T K ++ LR+ GKYLGLP +G+ + + + I R+
Sbjct: 654 SINLAKSAITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRI 713
Query: 301 LDKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGK 360
+ W + L+ AGK++L+KAVL +M +Y M + P + C+ I + + RFWW S
Sbjct: 714 RQRSHSWSIRFLSSAGKQILLKAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPD 773
Query: 361 ERGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPN 420
+R + W W ++ +GGLGF++ AK +WRI +P +L R L G Y
Sbjct: 774 KRKMAWVSWDKLTLPINEGGLGFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNT 826
Query: 421 SSFLQ-SGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAG 479
SSF+ S + S GW+ IL G++ L++ W IG G + VW + W+S Q P
Sbjct: 827 SSFMDCSASPSFASHGWRGILAGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGP 886
Query: 480 DAE----LTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDG 535
E L+V+ LI DVK WN+ + P Q ++ +I ++ + D L W K G
Sbjct: 887 PTETNKDLSVHDLICHDVKSWNVEAIRKHLP-QYEDQIRKITINALPLQDSLVWLPVKSG 945
Query: 536 EYTVKTGYQVAYSLKEQARGPQPHILNDPIWNQ-IWGIQVP*KIKMFLWKACNEALPVKA 594
EYT KTGY +A P D W + IW I K+K FLWKA ALPV
Sbjct: 946 EYTTKTGYALA------KLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGE 999
Query: 595 SLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLTQ 654
+L RR+I + C C Q E S+ HL+L CP+ + VW + + L S +
Sbjct: 1000 ALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVWELAPV----LFNPSEATHSSVAL 1054
Query: 655 LVIRLQENSEDLSRGLTIVAYY---LWGIWKERNECHFQQRPPDPLGTTIR----IRASM 707
L++ + GL Y LW +WK RN F G ++ RA M
Sbjct: 1055 LLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWM 1114
Query: 708 LNGMEDNTPSPIPTQGRKPNYQARWDVPPPW-TLKLN---VDATYFKETCKGSIAVVVFD 763
+ + PSPI D P P LK+ VDA + T G + F
Sbjct: 1115 EAQLLIHHPSPIS------------DYPSPTPNLKVTSCFVDAAW---TTSGYCGMGWFL 1159
Query: 764 EKGTNVL---SHSKTIWAASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRER 820
+ V + S + + S L AE LAV AL+ A++ + ++ + SDC L+SL+
Sbjct: 1160 QDPYKVKIKENQSSSSFVGSALMAETLAVHLALVDALSTGVRQLNVFSDCKELISLLNSG 1219
Query: 821 RTDWKVEAVLRDIQD*RNLFRVCGFFWVPRTRNLCAHYVAK 861
++ ++ +L DI++ F FF++PR N+ A +AK
Sbjct: 1220 KSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNVVADSLAK 1260
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 505 bits (1301), Expect = e-143
Identities = 294/872 (33%), Positives = 456/872 (51%), Gaps = 17/872 (1%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ ++ P IN T + ++PK+ P + RPI+ CN LYKVI+K LVN+LK H+N +
Sbjct: 630 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 689
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ +Q+AFI GR I DN++IAHE H LK + +MA+K +++KAYDR+EWDFL+ +
Sbjct: 690 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 749
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
FGF KW+ IM V + +NG + P RGIRQG PLSPYLF+L + +SH
Sbjct: 750 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 809
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
L+ G ++G+R+ P ITHL FADDSLFF +AN L + + Y SGQ
Sbjct: 810 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 869
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I+++KS I F ST+ ++ IL + GKYLGLP ++G+ + +I RV
Sbjct: 870 INVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 929
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
+ W + L+ AGKE+++K+V AM Y MS + P+ I + + FWW +
Sbjct: 930 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 989
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
RGI W W + +K +GGLGF+D + N ALLAKQAWR+ P++L+ R +K YF +
Sbjct: 990 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDV 1049
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQA--PEAG 479
S L + + S+GW S+L G LK+ +IGDG +++ D V + E
Sbjct: 1050 SILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEET 1109
Query: 480 DAELTVNSLI--LPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDGEY 537
E+T+N+L W+ K+ + + +I L+ ++ PDK+ W + GEY
Sbjct: 1110 YKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEY 1169
Query: 538 TVKTGYQVAY---SLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVKA 594
TV++GY + S A P PH D + +IW + + K+K FLW+A ++AL
Sbjct: 1170 TVRSGYWLLTHDPSTNIPAINP-PHGSID-LKTRIWNLPIMPKLKHFLWRALSQALATTE 1227
Query: 595 SLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLTQ 654
L R + DP+C C+++ ES+ H L CP+ W S + S ++ ++
Sbjct: 1228 RLTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISN 1287
Query: 655 LVIRLQENS-EDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRA---SMLNG 710
++ +Q+ + D + L + + +W IWK RN F + P T + +A LN
Sbjct: 1288 ILNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNA 1345
Query: 711 MEDNTPSPIPTQGRKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKGTNVL 770
+ + +P PT+ N + W PP +K N DA + + + + ++ + GT +
Sbjct: 1346 TQSHKKTPSPTRQIAEN-KIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPIS 1404
Query: 771 SHS-KTIWAASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRERRTDWKVEAV 829
S K ++PL AE A+ AL ++++ DC L++LI +
Sbjct: 1405 WGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANH 1464
Query: 830 LRDIQD*RNLFRVCGFFWVPRTRNLCAHYVAK 861
L DI N F F ++ R N AH +AK
Sbjct: 1465 LEDISFWANKFASIQFGFIRRKGNKLAHVLAK 1496
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 503 bits (1294), Expect = e-142
Identities = 302/880 (34%), Positives = 453/880 (51%), Gaps = 32/880 (3%)
Query: 1 SFFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRL 60
SF QEG +N T + L+PK ++P + +LRPIS CN YKVI+KIL +LK + L
Sbjct: 257 SFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNL 316
Query: 61 ATQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKAC 120
++ QSAF+ GR I DNILIA E FH L+ K +FMAIK +M+KAYD++EW+F++A
Sbjct: 317 ISETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEAL 376
Query: 121 LTSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMS 180
L GF EKW+ IM C+T ++ +NG+ ++P+RG+RQG PLSPYLF+L E +
Sbjct: 377 LRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLI 436
Query: 181 HLLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQ 240
+ KA+ + I G+++A P ++HLLFADDSLFF KAN+E+ ++ IL Y SGQ
Sbjct: 437 ANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQ 496
Query: 241 MISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRV 300
I+ KS I F S K I IL + G YLGLP G S+ ++++ R+
Sbjct: 497 QINFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRL 556
Query: 301 LDKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGK 360
+I+GW K L++ GKEV+IK+V + Y MS R P+ + +++A+FWW S G
Sbjct: 557 QSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGD 616
Query: 361 ERGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPN 420
RG+HW W + +K GGLGF++ N ALLAKQ WR+ T PD+L+ + KG YF
Sbjct: 617 SRGMHWMAWDKLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRK 676
Query: 421 SSFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAG- 479
S+ L S ++ S+GW+S++ + + + + +G G+ + VW D W+ Q + + G
Sbjct: 677 SNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGG 736
Query: 480 ---DAELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDGE 536
D L V SLI WN+ L F + + +P+ + D L W TK G
Sbjct: 737 SIVDPSLKVKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGN 796
Query: 537 YTVKTGYQVA-YSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVKAS 595
YTVK+GY A L E P + + IW +Q P K++ FLW+ + +PV +
Sbjct: 797 YTVKSGYHTARLDLNEGTTLIGPDLTT--LKAYIWKVQCPPKLRHFLWQILSGCVPVSEN 854
Query: 596 LFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLTQL 655
L +R I D C C EES+ H L C R +W SQ+ S ++ L L
Sbjct: 855 LRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHL 914
Query: 656 VIRLQENSEDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRASMLNGMEDNT 715
R+ + + +W IWK RNE F+ DP+ + + E
Sbjct: 915 FWRIPSGVDSAP-----YPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQV 969
Query: 716 PSPIPTQGRKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDE-KGT-----NV 769
G + +R V ++ D T+ C + D+ GT +
Sbjct: 970 ELHSERHG-SLSIDSRIRV-----RDVSQDTTFSGFRCFIDGSWKASDQFSGTGWFCLSS 1023
Query: 770 LSHSKTIWAA------SPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRERRTD 823
L S T+ AA SPL E A+ A+ + + + +DC +LV ++ T+
Sbjct: 1024 LGESPTMGAANVRRSLSPLHTEMEALLWAMKCMIGADNQNVAFFTDCSDLVKMV-SSPTE 1082
Query: 824 WKVEAV-LRDIQD*RNLFRVCGFFWVPRTRNLCAHYVAKQ 862
W +V L ++Q R F + R+ N+ A +A++
Sbjct: 1083 WPAFSVYLEELQSDREEFTNFSLSLISRSANVKADKLARK 1122
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 502 bits (1293), Expect = e-142
Identities = 293/872 (33%), Positives = 455/872 (51%), Gaps = 17/872 (1%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ ++ P IN T + ++PK+ P + RPI+ CN LYKVI+K LVN+LK H+N +
Sbjct: 856 FFETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIV 915
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ +Q+AFI GR I DN++IAHE H LK + +MA+K +++KAYDR+EWDFL+ +
Sbjct: 916 SDSQAAFIPGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 975
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
FGF KW+ IM V + +NG + P RGIRQG PLSPYLF+L + +SH
Sbjct: 976 RLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSH 1035
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
L+ G ++G+R+ P ITHL FADDSLFF +AN L + + Y SGQ
Sbjct: 1036 LINGRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 1095
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I+++KS I F ST+ ++ IL + GKYLGLP ++G+ + +I RV
Sbjct: 1096 INVQKSMITFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVK 1155
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
+ W + L+ AGKE+++K+V AM Y MS + P+ I + + FWW +
Sbjct: 1156 KRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ 1215
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
RGI W W + +K +GGLGF+D + N ALLAKQAWR+ P++L+ R +K YF +
Sbjct: 1216 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDV 1275
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQA--PEAG 479
S L + + S+GW S+L G LK+ +IGDG +++ D V + E
Sbjct: 1276 SILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTEET 1335
Query: 480 DAELTVNSLI--LPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDGEY 537
E+T+N+L W+ K+ + + +I L+ ++ PDK+ W + GEY
Sbjct: 1336 YKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEY 1395
Query: 538 TVKTGYQVAY---SLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVKA 594
TV++GY + S A P PH D + +IW + + K+K FLW+A ++AL
Sbjct: 1396 TVRSGYWLLTHDPSTNIPAINP-PHGSID-LKTRIWNLPIMPKLKHFLWRALSQALATTE 1453
Query: 595 SLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLTQ 654
L R + DP C C+++ ES+ H L CP+ W S + S ++ ++
Sbjct: 1454 RLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISN 1513
Query: 655 LVIRLQENS-EDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRA---SMLNG 710
++ +Q+ + D + L + + +W IWK RN F + P T + +A LN
Sbjct: 1514 ILNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNA 1571
Query: 711 MEDNTPSPIPTQGRKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKGTNVL 770
+ + +P PT+ N + W PP +K N DA + + + + ++ + GT +
Sbjct: 1572 TQSHKKTPSPTRQIAEN-KIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPIS 1630
Query: 771 SHS-KTIWAASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRERRTDWKVEAV 829
S K ++PL AE A+ AL ++++ DC L++LI +
Sbjct: 1631 WGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANH 1690
Query: 830 LRDIQD*RNLFRVCGFFWVPRTRNLCAHYVAK 861
L DI N F F ++ + N AH +AK
Sbjct: 1691 LEDISFWANKFASIQFGFIRKKGNKLAHVLAK 1722
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 482 bits (1240), Expect = e-136
Identities = 270/783 (34%), Positives = 415/783 (52%), Gaps = 22/783 (2%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ G LP N T + L+PK P+ + +RPIS C+ LYK+I+KIL KLK H+ +
Sbjct: 426 FFETGVLPQEWNHTHLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIV 485
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ +QSAF + R I DNILIAHE H L+ K EFM K +M+KAYDR+EW FL+ L
Sbjct: 486 SPSQSAFFAERLISDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEIL 545
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
+ GF++KW+ IM CVT ++ +NG+ + P+RGIRQG P+SP+LFVL E + H
Sbjct: 546 VALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIH 605
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
+L +A+ ++ G++ P + HLLF DD+ +A + + Q++ L+ Y SGQ+
Sbjct: 606 ILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQL 665
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I++EKS I F TK I + + GKYLGLP S+ + +IK ++
Sbjct: 666 INVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQ 725
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
+ GW +K L+Q GKE+L+K++ A+ Y M+ R P+ C + + + FWW S
Sbjct: 726 SHLSGWYDKTLSQGGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFS 785
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
IHW ++ K GG GFKD N ALLAKQAWR+++ ++ + K YF N+
Sbjct: 786 NKIHWIGGKKLTLPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNT 845
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAP----E 477
FL + + R S+ W+SIL G+E L +IG+G + VW DKW+ D + P
Sbjct: 846 DFLNARQGTRPSYTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHS 905
Query: 478 AGDAELTVNSLILPDVKQWNLPKLLSTF-PRQIAFKVFQIPLSLTQVPDKLCWPHTKDGE 536
+ + V+ LI P + WNL KL F + + + Q PL ++ D CW T +G
Sbjct: 906 LMNIHMKVSHLIDPLTRNWNLKKLTELFHEKDVQLIMHQRPLISSE--DSYCWAGTNNGL 963
Query: 537 YTVKTGYQVA--YSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVKA 594
YTVK+GY+ + + K + + +P+++++W ++ KIK+F+WKA AL V+
Sbjct: 964 YTVKSGYERSSRETFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVED 1023
Query: 595 SLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLTQ 654
L R I C C ++ E++ HLL CP+ R VW S + G+ +
Sbjct: 1024 RLRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSN--IN 1081
Query: 655 LVIRLQENSEDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRASMLNGMEDN 714
VI+ +N T+ + LW IWK RN+ FQ GT + + E+
Sbjct: 1082 HVIQNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQ-------GTGLTSSEIVAKAYEEC 1134
Query: 715 T---PSPIPTQGRKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKGTNVLS 771
+ + G + +W+ PP LK N+ + ++ ++ V+ D G VL
Sbjct: 1135 NLWINAQEKSSGGVSPSEHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMG-QVLL 1193
Query: 772 HSK 774
HS+
Sbjct: 1194 HSR 1196
>At3g45550 putative protein
Length = 851
Score = 481 bits (1237), Expect = e-135
Identities = 267/759 (35%), Positives = 408/759 (53%), Gaps = 18/759 (2%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ ++ +N T + ++PK+ P+ + RPI+ CN LYKVI+K +VN+LK H+N +
Sbjct: 95 FFESSHMKTSVNHTNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIV 154
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ +Q+AFI GR I DN++IAHE H LK + +MA+K +++KAYDR+EWDFL+ +
Sbjct: 155 SDSQAAFIPGRIINDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTM 214
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
FGF +KW+ IM V + +NG + P RGIRQG PLSPYLF+L + +SH
Sbjct: 215 RLFGFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSH 274
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
L+ G I+G+R+ P ITHL FADDSLFF +AN L + + Y SGQ
Sbjct: 275 LIKVKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQK 334
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I+++KS I F ST+ ++ ++L + GKYLGLP ++G+ + N+I RV
Sbjct: 335 INVQKSLITFGSRVYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVK 394
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
++ W K L+ AGKE+L+K+V AM Y MS + PQ I + + FWW +
Sbjct: 395 ERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNK 454
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
RGI W W + +K +GGLGF+D + N ALLAKQAWRI P++L+ R +K YF ++
Sbjct: 455 RGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDN 514
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAGDA 481
S + + ++ S+GW S+L G L++ ++IGDG +++ D V D P D
Sbjct: 515 SIIDAKTRSQQSYGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDN-VVDSHPPRPLLTDE 573
Query: 482 ELTVNSLILPDVKQ-------WNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKD 534
+ N L L ++ Q W+ KL + + + +I LS D+L W +
Sbjct: 574 Q--HNGLSLDNLFQHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNST 631
Query: 535 GEYTVKTGYQVAYSLKEQA--RGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPV 592
G+YTV++GY ++ +PH D + +IW + + K+K FLW+ ++ALP
Sbjct: 632 GDYTVRSGYWLSTHDPSNTIPTMAKPHGSVD-LKTKIWNLPIMPKLKHFLWRILSKALPT 690
Query: 593 KASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWL 652
L R + DP C C ++ ES+ H L CP+ W S + S ++D +
Sbjct: 691 TDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNI 750
Query: 653 TQLVIRLQENSEDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRA---SMLN 709
+ +++ LQ + S+ L I + LW IWK RN F P T +R +A LN
Sbjct: 751 SNILLLLQNTTITDSQKL-IPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLN 809
Query: 710 GMEDNTPSPIPTQGRKPNYQARWDVPPPWTLKLNVDATY 748
+ P +P + W P +K N DA++
Sbjct: 810 ATQTQGPRRLPKRTTAAG-NTTWVKPQMPYIKCNFDASF 847
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 472 bits (1214), Expect = e-133
Identities = 286/876 (32%), Positives = 459/876 (51%), Gaps = 41/876 (4%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ + IN+T + L+PK+ P+++ RPIS C YK+I+KIL+ +LK + +
Sbjct: 836 FFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVI 895
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ +Q+AF+ G+ I DN+L+AHE H LK+ + ++ ++A+K +++KAYDR+EW+FL+ +
Sbjct: 896 SDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVM 955
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
GF+ +WV IM CVT S+ +NG ++ P RGIRQG PLSPYLF+ AE +S+
Sbjct: 956 IQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSN 1015
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
+L KA+ +I G+++ +C I+HLLFADDSLFF +A+ + QL I Y ASGQ
Sbjct: 1016 MLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQK 1075
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I+ KS IIF + + + ++ +L + GKYLGLP + G+ + +I +V
Sbjct: 1076 INYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVK 1135
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
++ +GW L+ AGKE++IKA+ A+ Y+M+ P C I + I FWW GKE
Sbjct: 1136 ERTEGWAYNYLSPAGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWW---GKE 1192
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
+G LGFKD N ALLAKQAWRI T P +L R KGLY+PN+
Sbjct: 1193 N---------------EGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNT 1237
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAG-- 479
++L++ + S+GW SI +GK L++ +GDG K+W+D W+ + P G
Sbjct: 1238 TYLRANKGGHASYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWL-PTLPPRPARGPI 1296
Query: 480 -DAELTVNSLILPDVKQWN---LPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDG 535
D ++ V L + ++W+ +L+ +Q+A ++ LS D W +T++
Sbjct: 1297 LDEDMKVADLWRENKREWDPVIFEGVLNPEDQQLAKSLY---LSNYAARDSYKWAYTRNT 1353
Query: 536 EYTVKTGYQVAYSL---KEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPV 592
+YTV++GY VA + +E+ P + P+ +IW +++ KIK F+W+ + AL
Sbjct: 1354 QYTVRSGYWVATHVNLTEEEIINPLEG--DVPLKQEIWRLKITPKIKHFIWRCLSGALST 1411
Query: 593 KASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWL 652
L R+I DP C C +E++ H++ C + + VW S+ + + +++ +
Sbjct: 1412 TTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENI 1471
Query: 653 TQLVIRLQENSEDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRASMLNGME 712
++ + + + GL + + +W +WK RNE FQQ P + +E
Sbjct: 1472 RLILQGKKNQNLPILNGL-MPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVE 1530
Query: 713 ----DNTPSPIPTQG--RKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKG 766
D S Q R + +W PP LK N D+ Y + S ++ D G
Sbjct: 1531 TMVNDTAISHNTAQSNDRPLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNG 1590
Query: 767 TNVLSH-SKTIWAASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRERRTDWK 825
+ S +K + S L AEAL AL + ++ D L L +LI +
Sbjct: 1591 RVLHSGCAKLQQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLINKTEDHHL 1650
Query: 826 VEAVLRDIQD*RNLFRVCGFFWVPRTRNLCAHYVAK 861
+E +L DI+ +V R RNL A + K
Sbjct: 1651 LETLLYDIRFWMTKLPFSSIGYVNRERNLAADKLTK 1686
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 471 bits (1212), Expect = e-133
Identities = 303/883 (34%), Positives = 451/883 (50%), Gaps = 65/883 (7%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF P +NET + L+PK P + RPI+ CN YK++ KI+ +++ + +L
Sbjct: 369 FFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLI 428
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
++ QSAF+ GR I DN+LI HE HFL+ + K MA+K +M+KAYDR+EWDFLK L
Sbjct: 429 SENQSAFVPGRVISDNVLITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVL 488
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
FGF W+D +++CVT S+ F +NG +VVP RG+RQG PLSP LF+L E +S
Sbjct: 489 QRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSG 548
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
L +AQ ++ G+R++ P + HLLFADD++FF+K++ E +L IL+ Y ASGQ
Sbjct: 549 LCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQS 608
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I+ KS + FS T S K Q+ IL++ GKYLGLP +G+ + + I ++
Sbjct: 609 INFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIR 668
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
K W + L+QAGK+V++KAVL +M Y+MS + P C+ I + + RFWW +
Sbjct: 669 QKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDV 728
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
R W W ++ K GGLGF+D N +LLAK WR+ P++L R L G Y +S
Sbjct: 729 RKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSS 788
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAGDA 481
SF++ ++ S GW+SI+ G+E LKE W+I +G +V +W D W+S P G A
Sbjct: 789 SFMECKLPSQPSHGWRSIIAGREILKEGLGWLITNGEKVSIWNDPWLSISKPLVP-IGPA 847
Query: 482 -----ELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDGE 536
+L V++LI + QW+ K+ P + Q+P ++ DKL W K G+
Sbjct: 848 LREHQDLRVSALINQNTLQWDWNKIAVILPNYENL-IKQLPAPSSRGVDKLAWLPVKSGQ 906
Query: 537 YTVKTGYQVAYSLKEQARGPQPHILNDPIW-NQIWGIQVP*KIKMFLWKACNEALPVKAS 595
YT ++GY +A A P P + W + +W +Q KIK +WKA EALPV
Sbjct: 907 YTSRSGYGIA----SVASIPIPQTQFN--WQSNLWKLQTLPKIKHLMWKAAMEALPVGIQ 960
Query: 596 LFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGS--LTVKDWLT 653
L RRHI+P C C ES HL C + VW + L + GS L L
Sbjct: 961 LVRRHISPSAACHRCGA-PESTTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLK 1019
Query: 654 QLVIRLQENSEDLSRGLTIVAYYLW--GIWKERNECHFQQRPPDPLGTTIRIRASMLNGM 711
+ +I G+T A + W GI+ + LGT R L
Sbjct: 1020 KAIIL-------PPTGVTSAALFPWICGIYGK-------------LGTMTRAILDALAWQ 1059
Query: 712 EDNTPSPIPTQGRKPNYQARWDVPPPWTLKL-------NVDATYFKETCKGSIAVVVFDE 764
P + R V P L + VDA + ++ S+A +
Sbjct: 1060 SAQRCLP----------KTRNVVHPISQLPVLRSGYFCFVDAAWIAQS---SLAGSGWVF 1106
Query: 765 KGTNVLSHSKTIWAA------SPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIR 818
+ L ++A S L+AEA A++ ALL A+ L + ++SD ++V +
Sbjct: 1107 QSATALEKETATYSAGCRRLPSALSAEAWAIKSALLHALQLGRTDLMVLSDSKSVVDALT 1166
Query: 819 ERRTDWKVEAVLRDIQD*RNLFRVCGFFWVPRTRNLCAHYVAK 861
+ ++ +L +I+ R F F ++ R+ N A AK
Sbjct: 1167 SNISINEIYGLLMEIRALRVSFHSLCFNFISRSANAIADATAK 1209
>At3g31420 hypothetical protein
Length = 1491
Score = 470 bits (1210), Expect = e-132
Identities = 291/870 (33%), Positives = 435/870 (49%), Gaps = 73/870 (8%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ L N T + L+PKV+ P I + RPI+ CN YK+I+KILVN+LK H+
Sbjct: 659 FFERSELDERHNHTNLCLIPKVETPTTIAKFRPIALCNVSYKIISKILVNRLKKHLGGAI 718
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
T+ Q+AF+ GR I +N +IAHE ++ LK + +MA+K ++ KAYDRLEWDFL+ +
Sbjct: 719 TENQAAFVPGRLITNNAIIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETM 778
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
GF+ KW++RIM CVT F +NG + P+RGIR G PLSPYLF+L AE +SH
Sbjct: 779 RQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVLSH 838
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
++ +A+ +++G+R++ + P I+HLLFADDS+FF AN+ +
Sbjct: 839 MIKQAEINKKLKGIRLSTQGPFISHLLFADDSIFFTLANQRSCTAIKE------------ 886
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
TK ++ +L + GKYLGLP ++ K + N+I +V
Sbjct: 887 ---------------PDTKRRMRHLLGIHNEGGEGKYLGLPEQFNKKKKELFNYIIEKVK 931
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
DK GW +K L+Q GKEVL+KAV AM Y+M+I + + C+ I + +ARFWW S +
Sbjct: 932 DKTQGWSKKFLSQGGKEVLLKAVALAMPVYSMNIFKLTKEVCEEIDSLLARFWWSSGNET 991
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
+G+HW W +S K +GGLGFK+ NLALL KQ W + P+ L R L+G YFP +
Sbjct: 992 KGMHWFTWKRMSIPKKEGGLGFKELENFNLALLGKQTWHLLQHPNCLMARVLRGRYFPET 1051
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAGDA 481
+ + + + R S+ W+SIL G+ LK+ +GDGS + W D W+ L +P A
Sbjct: 1052 NVMNAVQGRRASFVWKSILHGRNLLKKGLRCCVGDGSLINAWLDPWLP---LHSPRA--- 1105
Query: 482 ELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDGEYTVKT 541
KQ + P+ Q+ + T D + W +TKDG YTVK+
Sbjct: 1106 ----------PYKQEDAPE--------------QLLVCSTARDDLIGWHYTKDGMYTVKS 1141
Query: 542 GYQVAYSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVKASLFRRHI 601
Y +A L G P + + +W + KIK F WK + A+ L RHI
Sbjct: 1142 AYWLATHLPGTT-GTHPPPGDIKLKQLLWKTKTAPKIKHFCWKILSGAIATGEMLRYRHI 1200
Query: 602 APDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLTQLVIRLQE 661
+C C +DEE+ HL C + +A W + L + Q S+ + + +
Sbjct: 1201 NKQSICKRCCRDEETSQHLFFECDYAKATWRGAGL-PNLIFQDSIVTLEEKFRAMFTFNP 1259
Query: 662 NSEDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIR---ASMLNGMEDNTPSP 718
++ + R L + LW +W+ RN FQQ+ P T+++ A +ED
Sbjct: 1260 STTNYWRQLPF--WILWRLWRSRNILTFQQK-HIPWEVTVQLAKQDALEWQDIEDRVQVI 1316
Query: 719 IPTQGRKPNYQA--RWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKGTNV---LSHS 773
P R N A RW P K N D +Y V+ DE G + +
Sbjct: 1317 NPLSRRHSNRYAANRWTRPVCGWKKCNYDGSY-STIINSKAGWVIRDEHGQFIGGGQAKG 1375
Query: 774 KTIWAASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIRERRTDWKVEAVLRDI 833
K A A +AL + A+ + K+ D + + ++ E + + V +RDI
Sbjct: 1376 KHTNNALESALQALII--AMQSCWSHGHTKVCFEGDNIEVYQILNEGKARFDVYNWIRDI 1433
Query: 834 QD*RNLFRVCGFFWVPRTRNLCAHYVAKQH 863
Q + F+ C F W+ R N A +AK H
Sbjct: 1434 QAWKRRFQECRFLWINRRNNKPADTLAKGH 1463
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 466 bits (1199), Expect = e-131
Identities = 278/785 (35%), Positives = 421/785 (53%), Gaps = 26/785 (3%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FFQ G LP N T + L+PK+ KP + +RPIS C+ +YK+I+KIL +LK ++ +
Sbjct: 203 FFQTGILPEDWNHTHLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIV 262
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ QSAF++ R + DNI++AHE H L+ K +FM K +M+KAYDR+EW FLK L
Sbjct: 263 SPTQSAFVAERLVSDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGIL 322
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
+ GF+ W++ +M CV+ S+ +NG+ + P RG+RQG PLSP+LFVL E + H
Sbjct: 323 LALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIH 382
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
+L +A++ G+I G++ P + HLLFADD+L KA++ E +++ L+ Y SGQM
Sbjct: 383 ILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQM 442
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I+ EKS I F TK I + + GKYLGLP + S+ +IK ++
Sbjct: 443 INSEKSAITFGAKVNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQ 502
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
++ GW K L+Q GK++L+K++ A Y M+ R + C + + + FWW S +
Sbjct: 503 SRLSGWYAKTLSQGGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDK 562
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
+ IHW + K GG GFKD N ALLAKQA R++T D+L + LK Y+ NS
Sbjct: 563 KKIHWIGAQKLMLPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNS 622
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEA--- 478
FL + + R S+ WQSIL G+E L IIG+G VW D W+ D + PE+
Sbjct: 623 DFLSATKGTRPSYAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQI 682
Query: 479 -GDAELTVNSLILPDVKQWNLPKLLSTFP-RQIAFKVFQIPLSLTQVPDKLCWPHTKDGE 536
D +L V+ LI P + WNL L FP ++I Q P++ Q D CW T G
Sbjct: 683 MVDIQLKVSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMASRQ--DSFCWFGTNHGL 740
Query: 537 YTVKTGY-----QVAYSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALP 591
YTVK+ Y QV + ++A QP + +P++ +IW + KIK+FLWK A+
Sbjct: 741 YTVKSEYDLCSRQVHKQMFKEAE-EQPSL--NPLFGKIWNLNSAPKIKVFLWKVLKGAVA 797
Query: 592 VKASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDW 651
V+ L R + + C +C + E++ H+L CP R VW + + + G +
Sbjct: 798 VEDRLRTRGVLIEDGCSMCPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTN- 856
Query: 652 LTQLVIRLQENSEDLSRGLTIVA-YYLWGIWKERNECHFQQRPPDPLGT-TIRIRASMLN 709
VI N+E LS L V+ + +W +WK RN+ F + +G+ ++ I L
Sbjct: 857 -VNHVIGNCHNTE-LSPHLRYVSPWIIWILWKNRNKRLF-----EGIGSVSLSIVGKALE 909
Query: 710 GMEDNTPSPIPTQGRKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKGTNV 769
++ + ++P W P LK N+ + K+ ++ VV + KG V
Sbjct: 910 DCKEWLKAHELICSKEPTKDLTWIPPLMNELKCNIGIAWSKKHQMAGVSWVVRNWKG-RV 968
Query: 770 LSHSK 774
L HS+
Sbjct: 969 LLHSR 973
>At1g24640 hypothetical protein
Length = 1270
Score = 459 bits (1180), Expect = e-129
Identities = 268/719 (37%), Positives = 386/719 (53%), Gaps = 36/719 (5%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF +G +P N T + L+PK P + LRPIS C+ LYK+I+KI+ +L+P + +
Sbjct: 437 FFADGIMPAEWNYTHLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIV 496
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ QSAF+S R I DNIL+AHE H LK + +EFMA+K +M+KAYDR+EW +L++ L
Sbjct: 497 SDTQSAFVSERLITDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLL 556
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
S GF KWV+ IM CV+ ++ +N ++ QRG+RQG PLSP+LFVL E ++H
Sbjct: 557 LSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTH 616
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
LL KAQ EG ++G++ + P + HLLFADDSLF KA+RE++ L IL Y A+GQ
Sbjct: 617 LLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQT 676
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I++ KS I F K I + L + G YLGLP + S+ + L+++K R+
Sbjct: 677 INLNKSSITFGEKVDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLK 736
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
+K+D W + L+Q GKEVL+K+V AM + MS + P C+ + +++A FWW S
Sbjct: 737 EKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHS 796
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
R IHW+ W + K GGLGF+D + N ALLAKQAWR+ PD L R LK YF +
Sbjct: 797 RKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDAT 856
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAG-- 479
FL + + R S+GW+SIL G+E L + +GDG+ + VW D W+ D +AP
Sbjct: 857 DFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNL 916
Query: 480 --DAELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDGEY 537
D L V +L+ P W+ L F + ++ I ++Q D W K G++
Sbjct: 917 IYDVTLKVKALLNPRTGFWDEEVLHDLFLPEDILRIKAIKPVISQA-DFFVWKLNKSGDF 975
Query: 538 TVKTGYQVAYSLKEQ----ARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVK 593
+VK+ Y +AY K Q QP L + Q+W +Q KIK+FLWK C E
Sbjct: 976 SVKSAYWLAYQTKSQNLRSEVSMQPSTLG--LKTQVWNLQTDPKIKIFLWKVCGEL---- 1029
Query: 594 ASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLT 653
ES H L CP +R +W S + ++ +
Sbjct: 1030 --------------------GESTNHTLFLCPLSRQIWALSDYPFPPDGFSNGSIYSNIN 1069
Query: 654 QLVIRLQENSEDLSRGLTIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRASMLNGME 712
L + ++N E I + LW IWK RN F+ T I+IR ++ E
Sbjct: 1070 HL-LENKDNKEWPINLRKIFPWILWRIWKNRNSFIFEGISYPATDTVIKIRDDVVEWFE 1127
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 408 bits (1048), Expect = e-114
Identities = 217/626 (34%), Positives = 347/626 (54%), Gaps = 13/626 (2%)
Query: 74 IQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACLTSFGFSEKWVDR 133
I DNILIAHE H L +T K F+A KL++ KA+D++EW F++A + GFSEKW +
Sbjct: 2 ITDNILIAHELIHSL-HTKKLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNW 60
Query: 134 IMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSHLLLKAQEEGRIQ 193
IM C+T ++ +NG+ +R++P+RGIRQG P+SPYL++L E +S L+ + + ++
Sbjct: 61 IMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLH 120
Query: 194 GLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQMISIEKSGIIFSR 253
G + + P I+HLLFA DSL F KA EE L+++L Y ASGQ ++ +KS I+F +
Sbjct: 121 GFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGK 180
Query: 254 NTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVLDKIDGWKEKLLN 313
T Q+S +L + + G+YLGLP G+++ N ++I + K+D W KLL+
Sbjct: 181 GLDFRTSEQLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLS 240
Query: 314 QAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKERGIHWKDWHFIS 373
AGKEVLIK+++ A+ Y+MS P I +++ FWW + + I W W ++
Sbjct: 241 PAGKEVLIKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLN 300
Query: 374 KAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNSSFLQSGRTARNS 433
K GGL +D N+ALLAKQ+WRI QP +L R K YFP L + T+++S
Sbjct: 301 DPKKMGGLAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSS 360
Query: 434 WGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAP----EAGDAELTVNSLI 489
+ W+SIL G + + +I G+G+ +++WKD W+ + P ++ ++L V+ L+
Sbjct: 361 YAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLL 420
Query: 490 LPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCWPHTKDGEYTVKTGYQVAYSL 549
+ +WN L + + I S+T D + W +T DG Y+VK+GY + L
Sbjct: 421 IEG--RWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKL 478
Query: 550 KEQARGPQP---HILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVKASLFRRHIAPDPV 606
+Q P + ++ IW P KIK F W++ + ALP +L RR + D
Sbjct: 479 SQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDT 538
Query: 607 CFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVKDWLTQLVIRLQENSEDL 666
C C + E V HLL C ++ +W Q H++ L G + + Q + +Q+ ++
Sbjct: 539 CQRCGEASEDVNHLLFQCRVSKEIW--EQAHIK-LCPGDSLMSNSFNQNLESIQKLNQSA 595
Query: 667 SRGLTIVAYYLWGIWKERNECHFQQR 692
+ +++ + W IWK RN+ F +
Sbjct: 596 RKDVSLFPFIGWRIWKMRNDLIFNNK 621
>At2g11240 pseudogene
Length = 1044
Score = 395 bits (1015), Expect = e-110
Identities = 203/520 (39%), Positives = 297/520 (57%), Gaps = 4/520 (0%)
Query: 1 SFFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRL 60
SFF L P IN+T + L+PK+ + + RPI+ C YK+I+K+L +L+P + +
Sbjct: 299 SFFSSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEI 358
Query: 61 ATQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKAC 120
++ QSAF+ R DN+LI HEA H+LK+ K FMA+K M+KAYDR+EWDF+K
Sbjct: 359 ISENQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLV 418
Query: 121 LTSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMS 180
+ GF + W+ I+QC+T S+ F +NG V P+RG+RQG PLSP+LF++ +E +S
Sbjct: 419 MQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLS 478
Query: 181 HLLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQ 240
L KAQ +G + GLR++ P + HLLFADD++FF +++ + + IL Y ASGQ
Sbjct: 479 GLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQ 538
Query: 241 MISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRV 300
MI+ KS I FSR T K + IL + GKYLGLP +G+ + + N I R+
Sbjct: 539 MINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRI 598
Query: 301 LDKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGK 360
+ W + L+ AGK ++K+VL +M YTMS + + C+ I +++ FWW S
Sbjct: 599 RQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSAD 658
Query: 361 ERGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPN 420
++ + W W ++K K +GGLGFKD + N ALLAK +WRI P + VR L G Y
Sbjct: 659 KKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRT 718
Query: 421 SSFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEAGD 480
SSFL TA +S GW+ I GK+ +K +IG G + VW + W+S P
Sbjct: 719 SSFLDCSVTAASSHGWRGICTGKDLIKSQLGKVIGSGLDTLVWNEPWLSLSTSSTPMGPA 778
Query: 481 AE----LTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQI 516
E +TV LI K W+ K+ P + + +I
Sbjct: 779 LEQFKSMTVAQLICQTTKSWDREKVWDLSPFKTTLQASRI 818
Score = 47.0 bits (110), Expect = 5e-05
Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 12/192 (6%)
Query: 675 YYLWGIWKERNECHFQQR---PPDPLGTTIRIRASMLNGMEDNTPSPIPTQGRKPNYQAR 731
+ LW +W RN+ F+Q+ D + +I L + S I G P+ +
Sbjct: 847 WILWNLWNCRNKLIFEQKHISSMDLISQSISQSTEWLGAQIQASKSKIVIPGISPS-EID 905
Query: 732 WDVPPPWTLKLNVDATYFKETCKGSIAVVVFDEKGTNVLSHSK--TIWAASPLAAEALAV 789
D T++ + DA++ +ET + VF + ++ SH K + SPL A+A A+
Sbjct: 906 LD-----TIQCSTDASWREETLQAGFG-WVFVDHSNHLESHHKAAAMNIRSPLLAKASAL 959
Query: 790 REALLLAMNLELPKIYLVSDCLNLVSLIRERRTDWKVEAVLRDIQD*RNLFRVCGFFWVP 849
A+ A +L K+ + SD LV ++ ++ ++ DI F F +V
Sbjct: 960 SLAIQHAADLGFKKLVVASDSQQLVKVLNGEPHPMELHGIVFDISVLSLNFEENSFSFVK 1019
Query: 850 RTRNLCAHYVAK 861
R N A +AK
Sbjct: 1020 RENNSKADALAK 1031
>At4g10830 putative protein
Length = 1294
Score = 390 bits (1003), Expect = e-108
Identities = 188/459 (40%), Positives = 279/459 (59%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ Y+ IN T + ++PK+ PE + RPI+ CN LYK+I+K LV +LK H++ +
Sbjct: 836 FFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIV 895
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
+ +Q+AFI GR + DN++IAHE H LK + +MA+K +++KAYDR+EW+FL+ +
Sbjct: 896 SDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTM 955
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
FGFSE W+ IM V ++ VNG + PQRGIRQG PLSPYLF+L A+ ++H
Sbjct: 956 RLFGFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNH 1015
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
L+ EG I+G+R+ P +THL FADDSLFF ++N L + + Y SGQ
Sbjct: 1016 LIKNRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQK 1075
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
I++ KS I F +T++++ +IL + + GKYLGLP ++G+ + + N+I RV
Sbjct: 1076 INMSKSMITFGSRVHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVK 1135
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
+ W K L+ AGKE+++K+V +M Y MS + P N I A + FWW K+
Sbjct: 1136 KRTSSWSAKYLSPAGKEIMLKSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKK 1195
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
R I W W + +K +GGLGF+D + N ALLAKQ WR+ P++L+ R +K YF
Sbjct: 1196 REIPWIAWKRLQYSKKEGGLGFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFRED 1255
Query: 422 SFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEV 460
S L + R S+GW S+L G + +K+ +I+GDG V
Sbjct: 1256 SILDAKRQRYQSYGWTSMLAGLDVIKKGSRFIVGDGKTV 1294
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 390 bits (1001), Expect = e-108
Identities = 251/837 (29%), Positives = 407/837 (47%), Gaps = 41/837 (4%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF G P N+ +V L+ KV KPE I Q RPIS CN L+K ITK++V +LK +N+L
Sbjct: 1014 FFSSGSFPQETNDVLVVLIAKVLKPEKITQFRPISLCNVLFKTITKVMVGRLKGVINKLI 1073
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
AQ++FI GR DNI++ E H ++ KG +M +KL++ KAYDR+ WD L+ L
Sbjct: 1074 GPAQTSFIPGRLSTDNIVVVQEVVHSMRRK-KGVKGWMLLKLDLEKAYDRIRWDLLEDTL 1132
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
+ G WV IM+CV G S R NGE + P RG+RQG PLSPYLFVL E + H
Sbjct: 1133 KAAGLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCH 1192
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
L+ + + + ++++ P ++H+ FADD + FA+A+ ++ L +L + ASGQ
Sbjct: 1193 LIESSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQK 1252
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
+S+EKS I FS+N L +IS M A GKYLG+P + T + R
Sbjct: 1253 VSLEKSKIYFSKNVLRDLGKRISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFS 1312
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
++ GWK ++L+ AG+ L KAVL ++ +TMS I+ PQ+ + F W S ++
Sbjct: 1313 SRLAGWKGRMLSFAGRLTLTKAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEK 1372
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
+ H W + + +GGLG + + MN AL+AK WR+ +LW + ++ Y
Sbjct: 1373 KKQHLVAWTRVCLPRREGGLGIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGD 1432
Query: 422 SFLQSGRTARNSWG--WQSILQG-KEFLKEAGLWIIGDGSEVKVWKDKWVSDQVLQAPEA 478
++ A+++W W+S+ G ++ + W+IGDG +++ W D+W+S + P A
Sbjct: 1433 VHDRNWTVAKSNWSSTWRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLS----ETPIA 1488
Query: 479 GDAELTVNSL--------ILPDVKQWNLPKLLSTFPRQIAFKVFQIPL-SLTQVPDKLCW 529
D+ + ++ + D W++ ++ + + + S+T D+L W
Sbjct: 1489 DDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAW 1548
Query: 530 PHTKDGEYTVKTGYQVAYSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEA 589
T DG +TVK+ A+++ P+ + ++ ++W +Q P ++++FLW N+A
Sbjct: 1549 GMTSDGRFTVKS----AFAMLTNDDSPRQDM--SSLYGRVWKVQAPERVRVFLWLVVNQA 1602
Query: 590 LPVKASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVK 649
+ + RRH+ VC +C ES+ H+L CP +W ++ + L Q T+
Sbjct: 1603 IMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGIW--DRIVPRRLQQSFFTMS 1660
Query: 650 --DWL-TQLVIRLQENSEDLSRGLTIVAYYLW-----GIWKERNECHFQQRPPDPLGTTI 701
+WL + L L D S + ++ W I+ E C + R L +
Sbjct: 1661 LLEWLYSNLRQGLMTEGSDWSTMFAMAVWWGWKWRCSNIFGENKTCRDRVRFIKDLAVEV 1720
Query: 702 RIRASMLNGMEDNTPSPIPTQGRKPNYQARWDVPPPWTLKLNVDATYFKETCKGSIAVVV 761
I S + G + N RW P K+N D S V+
Sbjct: 1721 SIAYS--------REVELRLSGLRVNKPIRWTPPMEGWYKINTDGASRGNPGLASAGGVL 1772
Query: 762 FDEKGTNVLSHSKTIWAASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLIR 818
+ G + I S AE V L +A +L + L D +V ++
Sbjct: 1773 RNSAGAWCGGFAVNIGRCSAPLAELWGVYYGLYMAWAKQLTHLELEVDSEVVVGFLK 1829
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 376 bits (966), Expect = e-104
Identities = 252/836 (30%), Positives = 409/836 (48%), Gaps = 45/836 (5%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ G LP N+ ++ L+ KV KPE I Q RP+S CN L+K+ITK++V +LK +++L
Sbjct: 338 FFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLI 397
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
AQ++FI GR DNI++ EA H ++ KG+ +M +KL++ KAYDR+ WDFL+ L
Sbjct: 398 GPAQASFIPGRLSIDNIVLVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRVRWDFLQETL 456
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
+ G SE W RIM VT S NGE + VP RG+RQG PLSPYLFVL E + H
Sbjct: 457 EAAGLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCH 516
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
L+ + + + + ++ ++H+ FADD + FA+A+ + + +L + ASGQ
Sbjct: 517 LIEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQK 576
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
+S+EKS I FS N + IS + GKYLG+P + T + RV
Sbjct: 577 VSLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVS 636
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
++ GWK + L+ AG+ L KAVL ++ + MS I P + + F W S ++
Sbjct: 637 ARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEK 696
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLY---- 417
+ H W I K K +GG+G + MN AL+AK WR+ ++LW R ++ Y
Sbjct: 697 KKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGG 756
Query: 418 FPNSSFLQSGRTARNSWGWQSILQG-KEFLKEAGLWIIGDGSEVKVWKDKWVSDQVL--- 473
++S+L+ R S W+S+ G +E + + W+ GDG ++ W D+W+ + L
Sbjct: 757 VQDTSWLKP--QPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVEL 814
Query: 474 ---QAPEAGDAELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSL-TQVPDKLCW 529
PE G+ LP WNL L P + ++ + + + D++ W
Sbjct: 815 GTDMIPE-GERIKVAADYWLPG-SGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISW 872
Query: 530 PHTKDGEYTVKTGYQVAYSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEA 589
T+DG +TV++ AYSL + G +P++ +N+IW + P ++++F+W
Sbjct: 873 KGTQDGAFTVRS----AYSLLQGDVGDRPNM--GSFFNRIWKLITPERVRVFIWLVSQNV 926
Query: 590 LPVKASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVK 649
+ RRH++ + +C +CN EE++ H+L CP +W +H S ++
Sbjct: 927 IMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLL 986
Query: 650 DWLTQLVIRLQENSEDLSRGL--TIVAYYLWGIWKERNECHFQQRPPDPLGTTIRIRASM 707
+WL + D +G+ T+ +W WK R F +R R R
Sbjct: 987 EWLF--------TNMDPVKGIWPTLFGMGIWWAWKWRCCDVFGER------KICRDRLKF 1032
Query: 708 LNGM-EDNTPSPIPTQGRKPN-----YQARWDVPPPWTLKLNVDATYFKETCKGSIAVVV 761
+ M E+ + G +PN RW VP +K+ D + +
Sbjct: 1033 IKDMAEEVRRVHVGAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAI 1092
Query: 762 FDEKGTNVLSHSKTIWAASPLAAEALAVREALLLAMNLELPKIYLVSDCLNLVSLI 817
+ +G + + I + + AE LL+A + ++ L DC +V +
Sbjct: 1093 RNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFL 1148
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 324 bits (830), Expect = 1e-88
Identities = 200/611 (32%), Positives = 312/611 (50%), Gaps = 43/611 (7%)
Query: 2 FFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRLA 61
FF+ G LP N+ ++ L+ KV KPE I Q RP+S CN L+K+ITK++V +LK +++L
Sbjct: 290 FFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLI 349
Query: 62 TQAQSAFISGRQIQDNILIAHEAFHFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKACL 121
AQ++FI GR DNI++ EA H ++ KG+ +M +KL++ KAYDR+ WDFL L
Sbjct: 350 GPAQASFIPGRLSFDNIVVVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRIRWDFLAETL 408
Query: 122 TSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETMSH 181
+ G SE W+ RIM+CV G NGE + P+RG+RQG P+SPYLFVL E + H
Sbjct: 409 EAAGLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCH 468
Query: 182 LLLKAQEEGRIQGLRMAPECPPITHLLFADDSLFFAKANREEAYQLISILNDYTLASGQM 241
+ A G + + ++ P ++H+ FADD + FA+A + Q
Sbjct: 469 QIETAVGRGDWKSISISQGGPKVSHVCFADDLILFAEA-----------------SVAQK 511
Query: 242 ISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIKLRVL 301
+S+EKS I FS N + I++ + + GKYLG+P + +T + RV
Sbjct: 512 VSLEKSKIFFSNNVSRDLEGLITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVS 571
Query: 302 DKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRSPGKE 361
++ GWK + L+ AG+ L KAVL ++ +TMS I P + + + F W S ++
Sbjct: 572 SRLSGWKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEK 631
Query: 362 RGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTLKGLYFPNS 421
R H W + + K GGLG + MN ALLAK WR+ +LW R L+ Y
Sbjct: 632 RKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKVTD 691
Query: 422 SFLQSGRTARNSWG--WQSILQGKEFLKE--AGLWIIGDGSEVKVWKDKWVSDQVLQAPE 477
S + +W W+SI G L+E A WI+ + + L +PE
Sbjct: 692 VHDSSWLVPKATWSSTWRSIGVG---LREGVAKGWILHEPLCTRA--------TCLLSPE 740
Query: 478 AGDAELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPL-SLTQVPDKLCWPHTKDGE 536
+A + + W++ KL PR + ++ + + + + D++ W T DG+
Sbjct: 741 ELNARV---EEFWTEGVGWDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRISWQGTSDGD 797
Query: 537 YTVKTGYQVAYSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEALPVKASL 596
+TV + AY L Q +P + + + +IWG+ P ++++FLW + +
Sbjct: 798 FTVGS----AYVLLTQEEESKPCM--ESFFKRIWGVIAPERVRVFLWLVGQQVIMTNVER 851
Query: 597 FRRHIAPDPVC 607
RRHI VC
Sbjct: 852 VRRHIGDIEVC 862
>At2g05980 putative non-LTR retroelement reverse transcriptase
Length = 1352
Score = 248 bits (632), Expect = 1e-65
Identities = 194/701 (27%), Positives = 320/701 (44%), Gaps = 40/701 (5%)
Query: 1 SFFQEGYLPPFINETVVALVPKVDKPENIGQLRPISCCNFLYKVITKILVNKLKPHMNRL 60
SFF +G+LP IN T++AL+ K + + RPISCCN LYK+++K++ N+LK +
Sbjct: 645 SFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPAS 704
Query: 61 ATQAQSAFISGRQIQDNILIAHEAF-HFLKNTCKGKTEFMAIKLEMNKAYDRLEWDFLKA 119
QSAFI R + +N+L+A E + K + ++ A+K++++KA+D ++W FL
Sbjct: 705 IAPNQSAFIKDRLMMENLLLASELVKDYHKESISSRS---ALKIDISKAFDFVQWPFLIN 761
Query: 120 CLTSFGFSEKWVDRIMQCVTGASFRFKVNGEVSKRVVPQRGIRQGYPLSPYLFVLAAETM 179
L + E ++ I C+ ASF +VNGE+S +RG+RQG LSPYL+V+ +
Sbjct: 762 VLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVL 821
Query: 180 SHLLLKAQEEGRIQGLRMAPEC--PPITHLLFADDSLFFAKANREEAYQLISILNDYTLA 237
S +L KA E +I P C +THL FADD + F+ + ++I +
Sbjct: 822 SCMLDKAAVEKKIS---YHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAM 878
Query: 238 SGQMISIEKSGIIFSRNTLSSTKHQISSILRMSAWDSPGKYLGLPAEWGKSRNNTLNWIK 297
S IS+EKS IF + K I P KYLGLP + + +
Sbjct: 879 SWLKISLEKS-TIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLV 937
Query: 298 LRVLDKIDGWKEKLLNQAGKEVLIKAVLQAMSAYTMSIIRFPQNFCQAICASIARFWWRS 357
++ +I W + L+ AG+ LIK+VL +++ + +S+ R P+ Q I + F W
Sbjct: 938 EKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSG 997
Query: 358 PG---KERGIHWKDWHFISKAKCKGGLGFKDFSTMNLALLAKQAWRIYTQPDALWVRTL- 413
P K+ I W + + K K +GGLG K N L K WRI + D+LWV+ +
Sbjct: 998 PDLNTKKAKIAWSE---VCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVN 1054
Query: 414 KGLYFPNSSFLQSGRTARNSWGWQSILQGKEFLKEAGLWIIGDGSEVKVWKDKWVS---- 469
K L + + T SW W+ IL+ ++ + + G+ W D W
Sbjct: 1055 KHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRL 1114
Query: 470 DQVLQAPEAGDAELTVNSLILPDVKQWNLPKLLSTFPRQIAFKVFQIPLSLTQVPDKLCW 529
Q + + D + N+ + + + + F QI ++ + D+ W
Sbjct: 1115 HQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRADFLNQIKSQIELARQDRSTDGDRSLW 1174
Query: 530 PHTKDGEYTVKTGYQVAYSLKEQARGPQPHILNDPIWNQIWGIQVP*KIKMFLWKACNEA 589
K E T K+ + + + +Q R L + +W K W A +
Sbjct: 1175 ---KQKEDTFKSSFSSSKTW-QQIRSIS---LRCDWYRGVWFSASTPKYSFVTWLAFHNR 1227
Query: 590 LPVKASLFRRHIAPDPVCFICNQDEESVYHLLLGCPWTRAVWLSSQLHVQHLHQGSLTVK 649
L + + + C C ++ E+ HL CP++ VW S L +G L +
Sbjct: 1228 LTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPYSSHVWFS-------LTKGLLNGR 1280
Query: 650 DWLTQLVI--RLQENSEDLSRGLTIVAYY---LWGIWKERN 685
+ L +I L ++S T+ + + +W+ERN
Sbjct: 1281 NILNWNLITPHLLDSSRPYLHVFTLRYAFQASIHSLWRERN 1321
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.323 0.138 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,811,489
Number of Sequences: 26719
Number of extensions: 840371
Number of successful extensions: 2151
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1724
Number of HSP's gapped (non-prelim): 203
length of query: 863
length of database: 11,318,596
effective HSP length: 108
effective length of query: 755
effective length of database: 8,432,944
effective search space: 6366872720
effective search space used: 6366872720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0111a.1