BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0108.16
(709 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g32110 non-LTR reverse transcriptase, putative 271 7e-73
At2g31080 putative non-LTR retroelement reverse transcriptase 267 1e-71
At4g08830 putative protein 237 1e-62
At2g45230 putative non-LTR retroelement reverse transcriptase 232 5e-61
At2g31520 putative non-LTR retroelement reverse transcriptase 214 1e-55
At2g25550 putative non-LTR retroelement reverse transcriptase 213 2e-55
At2g17610 putative non-LTR retroelement reverse transcriptase 207 2e-53
At2g07650 putative non-LTR retrolelement reverse transcriptase 202 4e-52
At2g17910 putative non-LTR retroelement reverse transcriptase 194 1e-49
At3g45550 putative protein 193 2e-49
At1g47910 reverse transcriptase, putative 187 1e-47
At4g10830 putative protein 173 3e-43
At4g09710 RNA-directed DNA polymerase -like protein 173 3e-43
At2g11240 pseudogene 168 1e-41
At1g31030 F17F8.5 166 5e-41
At2g16680 putative non-LTR retroelement reverse transcriptase 162 6e-40
At2g05200 putative non-LTR retroelement reverse transcriptase 161 1e-39
At4g15590 reverse transcriptase like protein 157 3e-38
At2g05980 putative non-LTR retroelement reverse transcriptase 149 7e-36
At4g04000 putative reverse transcriptase 141 1e-33
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 271 bits (694), Expect = 7e-73
Identities = 194/706 (27%), Positives = 327/706 (45%), Gaps = 72/706 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SH+ FADD++LF +AS Q++++ L F +SG KV+++KSK SK V +
Sbjct: 1213 PRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSLEKSKIYFSKNVLRDLGK 1272
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I + + DLGKYLG P+ R+++ F +++ + ++A WK +L+ AGR L
Sbjct: 1273 RISEESGMKATKDLGKYLGVPILQKRINKETFGEVIKRFSSRLAGWKGRMLSFAGRLTLT 1332
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V+ ++ +TM LP+S + +D+ R+F+W ++ +LV W+ V + GGL
Sbjct: 1333 KAVLTSILVHTMSTIKLPQSTLDGLDKVSRAFLWGSTLEKKKQHLVAWTRVCLPRREGGL 1392
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYL------RDHTILNAPHRASSSAV 285
G++ + N AL+ K W +L + + LW QV++ KY R+ T+ +++ S+
Sbjct: 1393 GIRSATAMNKALIAKVGWRVLNDGSSLWAQVVRSKYKVGDVHDRNWTVA----KSNWSST 1448
Query: 286 WKGI-LRARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQL--HLRDL 341
W+ + + RD + + +G G W + W + + V ++ Q+ RDL
Sbjct: 1449 WRSVGVGLRDVIWREQHWVIGDGRQIRFWTDRWLSETPIADD-SIVPLSLAQMLCTARDL 1507
Query: 342 VVNNA-WDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWG------------------ 382
+ WD S++ + + + L V +HD WG
Sbjct: 1508 WRDGTGWDMSQIAPFVTDNKRLDLLAVIVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTN 1567
Query: 383 --------ESELGLDLEAQSSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIR 434
S G + Q+ F+WL ++ A+ NS+R HL +S+ C C
Sbjct: 1568 DDSPRQDMSSLYGRVWKVQAPERVRVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGI 1627
Query: 435 EDGIHSLRDCTHSRELWSRMGAGRWN-NFWTLNLSDWITLHAR-------SDHAVKFLAG 486
E +H LRDC +W R+ R +F+T++L +W+ + R SD + F
Sbjct: 1628 ESILHVLRDCPAMSGIWDRIVPRRLQQSFFTMSLLEWLYSNLRQGLMTEGSDWSTMFAMA 1687
Query: 487 LWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLS----HDDSFWLS----- 537
+W WKWRC+ + K D F+K + ++S + LS
Sbjct: 1688 VWWGWKWRCSNIFGE---------NKTCRDRVRFIKDLAVEVSIAYSREVELRLSGLRVN 1738
Query: 538 --VVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAHYDNGNAFIAEML 595
+ W PP K+N DG+ R + GL GG LR+S+G+W GF + +A +AE+
Sbjct: 1739 KPIRWTPPMEGWYKINTDGASRGNPGLASAGGVLRNSAGAWCGGFAVNIGRCSAPLAELW 1798
Query: 596 ALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDI 655
+ GL +AW + L E D E+V H ++ L W + I
Sbjct: 1799 GVYYGLYMAWAKQLTHLELEVDS-EVVVGFLKTGIGETHPLSFLVRLCHNFLSKDWTVRI 1857
Query: 656 AWIDREGNRVADWLAKRGASIALSEVQELVEPPSELQILLLKDSLG 701
+ + RE N +AD LA S++L + E P L +LL +D+ G
Sbjct: 1858 SHVYREANSLADGLANHAFSLSLG-LHVFDEIPISLVMLLSEDNDG 1902
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 267 bits (683), Expect = 1e-71
Identities = 195/718 (27%), Positives = 334/718 (46%), Gaps = 71/718 (9%)
Query: 42 LEAY*GFSPWPPV---------SHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKV 92
+EA G W P+ SH+ FADD++LF +AS Q++++ L F +SG KV
Sbjct: 518 IEASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKV 577
Query: 93 NIDKSKAISSKGVHPSIRDDIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINR 152
+++KSK S V + I + I +LGKYLG P+ R+++ F +LE ++
Sbjct: 578 SLEKSKIFFSHNVSREMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSA 637
Query: 153 KMAAWKTNLLNLAGRACLAKSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQR 212
++A WK L+LAGR L K+V++++P + M LP S + +DR R+F+W ++
Sbjct: 638 RLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKK 697
Query: 213 GWNLVNWSTVVRDKSHGGLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKY----L 268
+L++W + + K+ GG+G++ D N AL+ K W LL++ LW +V++ KY +
Sbjct: 698 KQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVGGV 757
Query: 269 RDHTILNAPHRASSSAVWKGI-LRARDRLRGGFKFRLGTG-NSSIWYNDWSGHGNLCEHL 326
+D + L R SS+ W+ + + R+ + G + G G W + W L E
Sbjct: 758 QDTSWLKPQPRWSST--WRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELG 815
Query: 327 PFVHITDTQLHLRD--LVVNNAWDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGES 384
+ ++ + + + W+ L +PE +K+ L V V + D +W +
Sbjct: 816 TDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGT 875
Query: 385 ELGL------------DLEAQSSRESEF--------------FVWLCLHDALPVNSKRFH 418
+ G D+ + + S F F+WL + + N +R
Sbjct: 876 QDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMTNVERVR 935
Query: 419 CHLANSEACSRCSYIREDGIHSLRDCTHSRELWSR-MGAGRWNNFWTLNLSDWITLH--- 474
HL+ + CS C+ E +H LRDC +W R + R + F++ +L +W+ +
Sbjct: 936 RHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWLFTNMDP 995
Query: 475 ARSDHAVKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQL------ 528
+ F G+W WKWRC V RKI D F+K M ++
Sbjct: 996 VKGIWPTLFGMGIWWAWKWRCCDVFGE---------RKICRDRLKFIKDMAEEVRRVHVG 1046
Query: 529 -----SHDDSFWLSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAH 583
+ + W+ P + +K+ DG+ R + GL GGA+R+ G W+ GF +
Sbjct: 1047 AVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALN 1106
Query: 584 YDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEI 643
+ A +AE+ GL IAW++G RR+ + DC +LV S + H ++
Sbjct: 1107 IGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDC-KLVVGFLSTGVSNAHPLSFLVRLC 1165
Query: 644 RTMLRWSWRIDIAWIDREGNRVADWLAKRGASIALSEVQELVEPPSELQILLLKDSLG 701
+ W + ++ + RE NR+AD LA ++ L + P +++LLL D G
Sbjct: 1166 QGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLG-LHCFDACPEGVRLLLLADVNG 1222
>At4g08830 putative protein
Length = 947
Score = 237 bits (605), Expect = 1e-62
Identities = 172/617 (27%), Positives = 275/617 (43%), Gaps = 65/617 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SH+ FADD++LF +AS +Q++++ L F +SG KV++DKSK SK V +
Sbjct: 351 PKISHICFADDLILFAEASVSQIRVIRRILETFCIASGQKVSLDKSKIFFSKNVSRDLEK 410
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I + I +LGKYLG P+ R+++ F +LE ++ ++A WK L+ AGR L
Sbjct: 411 LISKESGIKSTRELGKYLGMPILQRRINKDTFGEVLERVSSRLAGWKGRSLSFAGRLTLT 470
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV++ +P +TM LP+S + +D+ R F+ + ++ +LV W V KS GGL
Sbjct: 471 KSVLSLIPIHTMSTISLPQSTLEGLDKLARVFLLGSSAEKKKLHLVAWDRVCLPKSEGGL 530
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G++ N AL+ K W L+ + LW ++++ KY +
Sbjct: 531 GIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKYR---------------------VG 569
Query: 292 ARDRLRGGFKFRLGTGNSSI-WYNDWSGHGNLCEHLPF-VHITDTQLHLRDLVVNN-AWD 348
R+ + G ++ +G G + W ++W H L + ++ +L ++DL N W
Sbjct: 570 LREVVSRGSRWVVGNGRDILFWSDNWLSHEALINRAVIEIPNSEKELRVKDLWANGLGWK 629
Query: 349 FSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGLDLEAQSSR-----------E 397
K+ I + V + D +WG S G+ + R
Sbjct: 630 LDKIEPYISYHTRLELAAVVVDSVTGARDRLSWGYSADGVFTVKSAYRLLTEDHDPRPNM 689
Query: 398 SEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDGIHSLRDCTHSRELWSRM-GA 456
+ FF L AL K F H+ ++ C C E +H L+DC +W R+
Sbjct: 690 AAFFDRLWRVVALE-RVKTFLWHIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQV 748
Query: 457 GRWNNFWTLNLSDWITLHARSDH-------AVKFLAGLWGIWKWRCNMVMDTAPWTIDTA 509
R +F+ +L W+ ++ + A F +W WKWRC V
Sbjct: 749 QRSYDFFNGSLFGWLYVNLGMKNAETGYAWATLFAIVVWWSWKWRCGYVFGEV------- 801
Query: 510 WRKIAHDHDDFLKFMQPQLSHDDSFWLS-----------VVWKPPPNQCMKMNVDGSFRS 558
D F + + ++SH + V WKPP + +K+N DG+ R
Sbjct: 802 --GKCRDRVKFFRDLAAEVSHAHAIHSQNGGLRTRVERLVAWKPPDGEWVKLNTDGASRG 859
Query: 559 DEGLMGTGGALRDSSGSWVTGFMAHYDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDC 618
+ GL TGG LRD G W GF +A +AE+ + GL +AWE+ R+ E D
Sbjct: 860 NLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDS 919
Query: 619 LELVRNLASVDWVSLHS 635
ELV + HS
Sbjct: 920 -ELVVGFLTTGISDTHS 935
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 232 bits (592), Expect = 5e-61
Identities = 181/681 (26%), Positives = 297/681 (43%), Gaps = 60/681 (8%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
PP+SHLLFADD + +C+ + + + + ++ +SG +VN KS K + R
Sbjct: 674 PPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRC 733
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I G YLG P S ++L + + +K+ W++N L+ G+ L
Sbjct: 734 LVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILL 793
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V A+PTYTM F +P++I I+ M F W RG + W + R K+ GGL
Sbjct: 794 KAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGL 853
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G K++ N ALLGK +W ++ + L +V + +Y LNAP + S WK I
Sbjct: 854 GFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYE 913
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSG-------HGNLCEHLPFVHITDTQLHLRDLVV 343
A+ ++ G + +G G + ++W + W G HL + ++ ++DL++
Sbjct: 914 AQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLL 973
Query: 344 NNA--WDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELG-----------LDL 390
+ W+++ + P+ ++ L + P + T D +TW S G ++
Sbjct: 974 PDGRDWNWNLVSLLFPDNTQENILALRPGGKET-RDRFTWEYSRSGHYSVKSGYWVMTEI 1032
Query: 391 EAQSSRESE-----------------------FFVWLCLHDALPVNSKRFHCHLANSEAC 427
Q + E F+W C+++ L V S + HLA ++C
Sbjct: 1033 INQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSC 1092
Query: 428 SRCSYIREDGIHSLRDCTHSRELWS-----RMGAGRWNNFWTLNLSDWITLH----ARSD 478
RC E H L C +R W+ G W N+ +++H SD
Sbjct: 1093 VRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESD 1152
Query: 479 HAVKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFW-LS 537
H LW +WK R ++V +T K D D + +PQ S
Sbjct: 1153 HHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRC 1212
Query: 538 VVWKPPPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGS--WVTGFMAHYDNGNAFIAEML 595
V W+PP + +K N DG++ D G G G LR+ +G W+ G A + E+
Sbjct: 1213 VKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWL-GLRALPSQQSVLETEVE 1271
Query: 596 ALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDI 655
ALR + RR+I ESD LV + + + + S + +IR +LR +
Sbjct: 1272 ALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNE--MDIPSLAPRIQDIRNLLRHFEEVKF 1329
Query: 656 AWIDREGNRVADWLAKRGASI 676
+ REGN VAD A+ S+
Sbjct: 1330 QFTRREGNNVADRTARESLSL 1350
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 214 bits (545), Expect = 1e-55
Identities = 184/689 (26%), Positives = 296/689 (42%), Gaps = 83/689 (12%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P ++HL FADD L FCQA+ Q + D + SG K+N+ KS V+ S +
Sbjct: 830 PAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQS 889
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I IP GKYLG P GR + F ++++ + ++ + W L+ AG+ +
Sbjct: 890 KLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIML 949
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV AMP Y M F LP+ I+ I+ + +F W K S QRG V W + K GGL
Sbjct: 950 KSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGL 1009
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K W L++ N L+ +VM+ +Y +D +IL+A R S W +L
Sbjct: 1010 GFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLD 1069
Query: 292 ARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNNA----- 346
L+ G + +G G N G N+ + P +T+ +++ +NN
Sbjct: 1070 GIALLKKGTRHLIGDGQ-----NIRIGLDNIVDSHP-PRPLNTEETYKEMTINNLFERKG 1123
Query: 347 ----WDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELG--------------- 387
WD SK+ + ++ F+ ++ D W + G
Sbjct: 1124 SYYFWDDSKI-SQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDP 1182
Query: 388 -------------LDLEAQ-----SSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSR 429
+DL+ + + + F+W L AL + + C R
Sbjct: 1183 STNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICPR 1242
Query: 430 CSYIREDGIHSLRDCTHSRELW-----SRMGAGRWNNFWTLNLS---DWITLHARSD-HA 480
C E H+L C + W S + +N + N+S +++ SD H
Sbjct: 1243 CHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK 1302
Query: 481 VKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQP---------QLSHD 531
+ + +W IWK R N+V + + + D+L Q Q++ +
Sbjct: 1303 LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAEN 1362
Query: 532 DSFWLSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGG-ALRDSSG---SWVTGFMAHYDNG 587
+ W+ PP +K N D F + L TGG +R+ G SW + +AH
Sbjct: 1363 -----KIEWRNPPATYVKCNFDAGF-DVQKLEATGGWIIRNHYGTPISWGSMKLAH--TS 1414
Query: 588 NAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSH-GHILSEIRTM 646
N AE AL L+ W +G ++ E DC L+ NL ++ +S HS + L +I
Sbjct: 1415 NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI-NL--INGISFHSSLANHLEDISFW 1471
Query: 647 LRWSWRIDIAWIDREGNRVADWLAKRGAS 675
I +I R+GN++A LAK G +
Sbjct: 1472 ANKFASIQFGFIRRKGNKLAHVLAKYGCT 1500
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 213 bits (543), Expect = 2e-55
Identities = 183/689 (26%), Positives = 297/689 (42%), Gaps = 83/689 (12%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P ++HL FADD L FCQA+ Q + D + SG K+N+ KS V+ S +
Sbjct: 1056 PAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSRVYGSTQS 1115
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I IP GKYLG P GR + F ++++ + ++ + W L+ AG+ +
Sbjct: 1116 RLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIML 1175
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV AMP Y M F LP+ I+ I+ + +F W K S QRG V W + K GGL
Sbjct: 1176 KSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGL 1235
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K W L++ N L+ +VM+ +Y +D +IL+A R S W +L
Sbjct: 1236 GFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLLD 1295
Query: 292 ARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNNA----- 346
L+ G + +G G N G N+ + P +T+ +++ +NN
Sbjct: 1296 GIALLKKGTRHLIGDGQ-----NIRIGLDNIVDSHP-PRPLNTEETYKEMTINNLFERKG 1349
Query: 347 ----WDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELG--------------- 387
WD SK+ + ++ F+ ++ D W + G
Sbjct: 1350 SYYFWDDSKI-SQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDP 1408
Query: 388 -------------LDLEAQ-----SSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSR 429
+DL+ + + + F+W L AL + + +C R
Sbjct: 1409 STNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPR 1468
Query: 430 CSYIREDGIHSLRDCTHSRELW-----SRMGAGRWNNFWTLNLS---DWITLHARSD-HA 480
C E H+L C + W S + +N + N+S +++ SD H
Sbjct: 1469 CHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHK 1528
Query: 481 VKFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQP---------QLSHD 531
+ + +W IWK R N+V + + + D+L Q Q++ +
Sbjct: 1529 LLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAEN 1588
Query: 532 DSFWLSVVWKPPPNQCMKMNVDGSFRSDEGLMGTGG-ALRDSSG---SWVTGFMAHYDNG 587
+ W+ PP +K N D F + L TGG +R+ G SW + +AH
Sbjct: 1589 -----KIEWRNPPATYVKCNFDAGF-DVQKLEATGGWIIRNHYGTPISWGSMKLAH--TS 1640
Query: 588 NAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLHSH-GHILSEIRTM 646
N AE AL L+ W +G ++ E DC L+ NL ++ +S HS + L +I
Sbjct: 1641 NPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLI-NL--INGISFHSSLANHLEDISFW 1697
Query: 647 LRWSWRIDIAWIDREGNRVADWLAKRGAS 675
I +I ++GN++A LAK G +
Sbjct: 1698 ANKFASIQFGFIRKKGNKLAHVLAKYGCT 1726
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 207 bits (527), Expect = 2e-53
Identities = 148/516 (28%), Positives = 227/516 (43%), Gaps = 52/516 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SHLLFA D L+FC+A+ + + + L+ + +SG VN KS + KG+ +
Sbjct: 129 PAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKASGQAVNFQKSAILFGKGLDFRTSE 188
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
+ + I G+YLG P GR F+F+ + +++KM W LL+ AG+ L
Sbjct: 189 QLSQLLGIYKTEGFGRYLGLPEFVGRNKTNAFSFIAQTMDQKMDNWYNKLLSPAGKEVLI 248
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KS++ A+PTY+M F LP +IH I AMR F WS + V WS + K GGL
Sbjct: 249 KSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGGL 308
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
++D+ D N ALL K W +L+ L +V + KY +L+A + SS WK IL
Sbjct: 309 AIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSILH 368
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITD---TQLHLRDLVVNNAW 347
+ G K+ G GN+ +W ++W L P V D +QL + DL++ W
Sbjct: 369 GTKLISRGLKYIAGNGNNIQLWKDNWL---PLNPPRPPVGTCDSIYSQLKVSDLLIEGRW 425
Query: 348 DFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTW---------------------GESEL 386
+ L I + + PS+ ++D TW +
Sbjct: 426 NEDLLCKLIHQNDIPHIRAIRPSITG-ANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHA 484
Query: 387 GLDLEAQSSRESEF--------------FVWLCLHDALPVNSKRFHCHLANSEACSRCSY 432
L + S ++ F F W H+ALP L + C RC
Sbjct: 485 SLPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGE 544
Query: 433 IREDGIHSLRDCTHSRELWSRM------GAGRWNNFWTLNLSDWITLH--ARSDHAVKFL 484
ED H L C S+E+W + G +N + NL L+ AR D ++
Sbjct: 545 ASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPF 604
Query: 485 AGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDF 520
G W IWK R +++ + W+I + +K D +
Sbjct: 605 IG-WRIWKMRNDLIFNNKRWSIPDSIQKALIDQQQW 639
>At2g07650 putative non-LTR retrolelement reverse transcriptase
Length = 732
Score = 202 bits (515), Expect = 4e-52
Identities = 150/565 (26%), Positives = 247/565 (43%), Gaps = 91/565 (16%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P +SH+ FADD++LF +AS Q++++ L F +SG KV+++KSK S+ V +
Sbjct: 199 PKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQKVSLEKSKIFFSENVSRDLGK 258
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I + I +LGKYLG P+ R+++ F +LE + ++A WK L+LAGR L
Sbjct: 259 LISDESGISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLT 318
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V++++P +TM LP+S + +D+ RSF+W QR +L++W V + +S GGL
Sbjct: 319 KAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGL 378
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKY----LRDHTILNAPHRASSSAVWK 287
G++ D N ALL K W L+++ + LW ++M+ Y +RD R+ S+ W+
Sbjct: 379 GIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKV--RSVCSSTWR 436
Query: 288 GI-LRARDRLRGGFKFRLGTGNSSI-WYNDWSGHGNLCEHLPFVHITDTQ-LHLRDLVVN 344
+ L R+ + G + +G G + W + W + L E L + + RDL N
Sbjct: 437 SVALGMREVVIPGLSWVIGDGREILFWMDKWLTNIPLAELLVQEPPAGWKGMRARDLRRN 496
Query: 345 N-AWDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGL--------------- 388
WD + + I + + D +WGES+ G
Sbjct: 497 GIGWDMATIAPYISSYNRLQLQSFVLDDITGARDRISWGESQDGRFKVSTTYSFLTRDEA 556
Query: 389 ---DLEAQSSR--------ESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDG 437
D++ R F+WL A+ N +R HL+ + C C +E
Sbjct: 557 PRQDMKRFFDRVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTICQVCKGAKESI 616
Query: 438 IHSLRDCTHSRELWSRMGAGRWNNFWTLNLSDWITLHARSDHAVKFLAGLWGIWKWRCNM 497
IH LRDC + GIW +
Sbjct: 617 IHVLRDCP----------------------------------------AMEGIW---LRL 633
Query: 498 VMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFWLSVVWKPPPNQCMKMNVDGSFR 557
+ D A + A K++ + + ++ + V W+ P +K+N DG+
Sbjct: 634 ISDLAN-EVSAAHLKLSGNTKEIVQVER-----------QVSWRKPNEGWVKLNTDGASH 681
Query: 558 SDEGLMGTGGALRDSSGSWVTGFMA 582
+ G GGALRD GF++
Sbjct: 682 GNPGEATAGGALRDEEVRLCYGFLS 706
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 194 bits (494), Expect = 1e-49
Identities = 150/569 (26%), Positives = 246/569 (42%), Gaps = 54/569 (9%)
Query: 54 VSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRDDI 113
V+HLLFADD LL C+A+ + + + L + SG +N++KS K V I+D I
Sbjct: 654 VNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKNVDIQIKDWI 713
Query: 114 RGIAPIPLVNDLGKYLGFP--LSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
+ + I L GKYLG P LSG + R F F+ E + ++ W L+ G+ L
Sbjct: 714 KSRSGISLEGGTGKYLGLPECLSGSK--RDLFGFIKEKLQSRLTGWYAKTLSQGGKEVLL 771
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KS+ A+P Y M F LP+++ + M F W+ +R + ++W + K GG
Sbjct: 772 KSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGGF 831
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G KD+ N ALL K W +L+ L+ +V Q +Y + L+A + S W+ IL
Sbjct: 832 GFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSILF 891
Query: 292 ARDRLRGGFKFRLGTGNSS-IWYNDWSGHGNLCEHLPFVHITDTQLHLRDLV--VNNAWD 348
R+ L G + +G G + +W + W G+ L + L + L+ + W+
Sbjct: 892 GRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRNWN 951
Query: 349 FSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGL-------------------- 388
+ L P + + L+ P D + W S GL
Sbjct: 952 LNMLRDLFPWKDVEIILKQRPLF--FKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQ 1009
Query: 389 DLEAQSSRESEF--------------FVWLCLHDALPVNSKRFHCHLANSEACSRCSYIR 434
+ + + S S F F+W LH A+PV + + + + C C
Sbjct: 1010 EAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTEN 1069
Query: 435 EDGIHSLRDCTHSRELW-----SRMGAGRWNNFWTLNLSDWITLHARSD--HAVKFLAG- 486
E H L +C +R++W S G+ N+ +T N+S I L ++D H ++F++
Sbjct: 1070 ETINHILFECPLARQVWAITHLSSAGSEFSNSVYT-NMSRLIDLTQQNDLPHHLRFVSPW 1128
Query: 487 -LWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFWLSVVWKPPPN 545
LW +WK R N ++ +I T A++ Q + +D+ W PP
Sbjct: 1129 ILWFLWKNR-NALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKITKWCPPLP 1187
Query: 546 QCMKMNVDGSFRSDEGLMGTGGALRDSSG 574
+K N+ ++ G +RDS G
Sbjct: 1188 GELKCNIGFAWSKQHHFSGASWVVRDSQG 1216
>At3g45550 putative protein
Length = 851
Score = 193 bits (491), Expect = 2e-49
Identities = 151/559 (27%), Positives = 243/559 (43%), Gaps = 60/559 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P ++HL FADD L FCQA+ Q + D + SG K+N+ KS V+ S +
Sbjct: 295 PAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSRVYGSTQT 354
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ + IP GKYLG P GR + FN++++ + + A+W L+ AG+ L
Sbjct: 355 RLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILL 414
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV AMP Y M F LP+ I+ I+ + +F W K S +RG V W + K GGL
Sbjct: 415 KSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGL 474
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K W +++ N L+ +VM+ +Y +D++I++A R+ S W +L
Sbjct: 475 GFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLLS 534
Query: 292 ARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCE-HLPFVHITDTQ---LHLRDLVV---- 343
LR G ++ +G G + G N+ + H P +TD Q L L +L
Sbjct: 535 GIALLRKGTRYVIGDGKTI-----RLGIDNVVDSHPPRPLLTDEQHNGLSLDNLFQHRGH 589
Query: 344 NNAWDFSKLFTSIPEE----MKQWFLEVSP-----------------------SVQNTSH 376
+ WD +KL T + + +K+ +L S + S+
Sbjct: 590 SRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSN 649
Query: 377 DVWTWGESELGLDLEAQ-----SSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCS 431
+ T + +DL+ + + + F+W L ALP + + C RC
Sbjct: 650 TIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCPRCR 709
Query: 432 YIREDGIHSLRDCTHSRELWSRMGAGRW-NNFWTLNLSDWI---------TLHARSDHAV 481
E H+L C + W + ++ + N+ D I T S +
Sbjct: 710 RENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQKLI 769
Query: 482 KFLAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQ----LSHDDSFWLS 537
F LW IWK R N+V + + + + +++L Q Q L + +
Sbjct: 770 PFWL-LWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPKRTTAAGN 828
Query: 538 VVWKPPPNQCMKMNVDGSF 556
W P +K N D SF
Sbjct: 829 TTWVKPQMPYIKCNFDASF 847
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 187 bits (476), Expect = 1e-47
Identities = 171/672 (25%), Positives = 287/672 (42%), Gaps = 52/672 (7%)
Query: 49 SPWPPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPS 108
+P P VSHLLFADD L FC+A+ Q ++ + L+ + + SG ++N KS V S
Sbjct: 455 TPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDS 514
Query: 109 IRDDIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRA 168
I+ DI+ I I + +G YLG P S G F+F+ + + ++ W L+ G+
Sbjct: 515 IKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKE 574
Query: 169 CLAKSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSH 228
+ KSV A +P Y M F LP++I + A+ F WS RG + + W + KS
Sbjct: 575 VMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSD 634
Query: 229 GGLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKG 288
GGLG +++ D N+ALL K +W L+ + L+ +V + +Y R L++ S S W+
Sbjct: 635 GGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRS 694
Query: 289 ILRARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLV--VNN 345
++ AR + G R+G+G S S+W + W I D L ++ L+ +N
Sbjct: 695 MISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSN 754
Query: 346 AWDFS-----------KLFTSIP------EEMKQWFLEVS-----PSVQNTSHDVWTWGE 383
W+ L +++P E+ W + S +T+ G
Sbjct: 755 FWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGT 814
Query: 384 SELGLDL--------EAQSSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIRE 435
+ +G DL + Q + F+W L +PV+ + + C C E
Sbjct: 815 TLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEE 874
Query: 436 DGIHSLRDCTHSRELW------SRMGAGRWNNFWTLNLSDWITLHARSDHAVKFLAGLWG 489
H+L C +R++W + G N+ +T NL + + +W
Sbjct: 875 SINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFT-NLDHLFWRIPSGVDSAPYPWIIWY 933
Query: 490 IWKWRCNMV---MDTAPWTIDTAWRKIAHDHDDFLKFMQPQ----LSHDDSFWLSVVWKP 542
IWK R V +D P I K A + + + LS D + V +
Sbjct: 934 IWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIRVRDVSQD 993
Query: 543 PPNQCMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAHYDNG-NAFIAEMLALRDGL 601
+ +DGS+++ + GTG S G T A+ + EM AL +
Sbjct: 994 TTFSGFRCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEALLWAM 1053
Query: 602 KIAWEQGCRRLICESDCLELVRNLAS-VDWVSLHSHGHILSEIRTMLRWSWRIDIAWIDR 660
K + + +DC +LV+ ++S +W + + L E+++ ++ I R
Sbjct: 1054 KCMIGADNQNVAFFTDCSDLVKMVSSPTEWPAFSVY---LEELQSDREEFTNFSLSLISR 1110
Query: 661 EGNRVADWLAKR 672
N AD LA++
Sbjct: 1111 SANVKADKLARK 1122
>At4g10830 putative protein
Length = 1294
Score = 173 bits (439), Expect = 3e-43
Identities = 87/258 (33%), Positives = 140/258 (53%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HL FADD L FCQ++ Q + D + SG K+N+ KS VH + ++
Sbjct: 1036 PGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSRVHGTTQN 1095
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I I GKYLG P GR R FN+++E + ++ ++W L+ AG+ +
Sbjct: 1096 RLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIML 1155
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV +MP Y M F LP +I+ I+ + +F W K + +R + W + K GGL
Sbjct: 1156 KSVAMSMPVYAMSCFKLPLNIVSEIEALLMNFWWEKNAKKREIPWIAWKRLQYSKKEGGL 1215
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D++ N ALL K VW ++ N N L+ ++M+ +Y R+ +IL+A + S W +L
Sbjct: 1216 GFRDLAKFNDALLAKQVWRMINNPNSLFARIMKARYFREDSILDAKRQRYQSYGWTSMLA 1275
Query: 292 ARDRLRGGFKFRLGTGNS 309
D ++ G +F +G G +
Sbjct: 1276 GLDVIKKGSRFIVGDGKT 1293
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 173 bits (439), Expect = 3e-43
Identities = 170/678 (25%), Positives = 286/678 (42%), Gaps = 74/678 (10%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HLLFADD + FC+ + T +++ L+ + +SG +N+ KS S I+
Sbjct: 615 PQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKR 674
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I +GKYLG P GR R F+ +++ I ++ +W L+ AG+ L
Sbjct: 675 RVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILL 734
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V+++MP+Y M F LP S+ I + F W +R V+W + + GGL
Sbjct: 735 KAVLSSMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGL 794
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRAS-SSAVWKGIL 290
G +++ K W +LK + L +V+ KY + ++ S +S W+GIL
Sbjct: 795 GFREIE-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSASPSFASHGWRGIL 847
Query: 291 RARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNN--AW 347
RD LR G + +G G+S ++W W + + T+ L + DL+ ++ +W
Sbjct: 848 AGRDLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSW 907
Query: 348 DFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVW--------------------TWGESELG 387
+ + +P+ Q ++ VW ++ S+L
Sbjct: 908 NVEAIRKHLPQYEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLD 967
Query: 388 LDLE-----AQSSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDGIHSLR 442
+ + +S + + F+W + ALPV ++ C RC E +H +
Sbjct: 968 FNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQ-TESSLHLML 1026
Query: 443 DCTHSRELWSRMGAGRWNNFWTLNLSDWITLHARSDHAVKFLAG----------LWGIWK 492
C +++++W + +N + S + L G LW +WK
Sbjct: 1027 LCPYAKKVW-ELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWK 1085
Query: 493 WRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFWLSVVWKPPPN-QCMKMN 551
R ++ D + + K D +M+ QL +S P PN +
Sbjct: 1086 ARNRLIFDNHSCSEEGLVLKAIL---DARAWMEAQLLIHHPSPISDYPSPTPNLKVTSCF 1142
Query: 552 VDGSFRSDEGLMGTGGALRD----------SSGSWVTGFMAHYDNGNAFIAEMLALRDGL 601
VD ++ + G G G L+D SS S+V G+A +AE LA+ L
Sbjct: 1143 VDAAW-TTSGYCGMGWFLQDPYKVKIKENQSSSSFV---------GSALMAETLAVHLAL 1192
Query: 602 KIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIAWIDRE 661
A G R+L SDC EL+ L S S+ +L +IR + + +I R
Sbjct: 1193 VDALSTGVRQLNVFSDCKELISLLNS--GKSIVELRGLLHDIRELSVSFTHLCFFFIPRL 1250
Query: 662 GNRVADWLAKRGASIALS 679
N VAD LAK S+ LS
Sbjct: 1251 SNVVADSLAKSALSVILS 1268
>At2g11240 pseudogene
Length = 1044
Score = 168 bits (425), Expect = 1e-41
Identities = 88/266 (33%), Positives = 146/266 (54%), Gaps = 1/266 (0%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HLLFADD + FC++ + L+ + +SG +N KS S+ I+
Sbjct: 500 PRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKT 559
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
+ + I I LV LGKYLG P GR R FN +++ I ++ +W + L+ AG+ +
Sbjct: 560 EAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTML 619
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV+A+MPTYTM F L S+ I A+ F W + ++ + WS + ++K GGL
Sbjct: 620 KSVLASMPTYTMSCFKLLVSLCKRIQSALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGL 679
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G KD+++ N ALL K W ++++ + + V+++ KY R + L+ A+SS W+GI
Sbjct: 680 GFKDITNFNDALLAKLSWRIVQSPSCVLVRILLGKYCRTSSFLDCSVTAASSHGWRGICT 739
Query: 292 ARDRLRGGFKFRLGTG-NSSIWYNDW 316
+D ++ +G+G ++ +W W
Sbjct: 740 GKDLIKSQLGKVIGSGLDTLVWNEPW 765
>At1g31030 F17F8.5
Length = 872
Score = 166 bits (419), Expect = 5e-41
Identities = 126/495 (25%), Positives = 222/495 (44%), Gaps = 49/495 (9%)
Query: 54 VSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRDDI 113
++HL FADD+++ T ++ + + +F SGL+++++KS + GV P I+ +I
Sbjct: 345 LTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKS-TLYMAGVSPIIKQEI 403
Query: 114 RGIAPIPLVNDLG----KYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRAC 169
+ D+G +YLG PL R++ ++ LLE I +++A W + AGR
Sbjct: 404 AA----KFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFN 459
Query: 170 LAKSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHG 229
L KSV+ ++ + + F LPR I ID+ SF+WS ++W V + K+ G
Sbjct: 460 LIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEG 519
Query: 230 GLGMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRAS-SSAVWKG 288
GLG++++ + N K VW ++ NSN LW + + +R +I + S S +W+
Sbjct: 520 GLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRK 579
Query: 289 ILRARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNNAW 347
IL+ RD + + +G G S S WY+ WS HG L + + D + R+ V +AW
Sbjct: 580 ILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIP-REASVADAW 638
Query: 348 -------DFSKLFTSIPEEMKQWFLEVSPSVQNT----SHDVWT--WGESELGLDLEAQS 394
+ L I E M + S + +DV+ + + ++A S
Sbjct: 639 TRRSRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATS 698
Query: 395 SRES--------------EFFVWLCLHDALPVNSKRFHCHLANSEA--CSRCSYIREDGI 438
S S WL +H+ LP + + + S + C C+ +
Sbjct: 699 STVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLE 758
Query: 439 HSLRDCTHSRELWSRMGAGRWNNFWTLNLSDWIT-LHARSDHAVK-------FLAGLWGI 490
H C+++ +W+ + G W ++ S +T + V+ F A ++ +
Sbjct: 759 HLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLTHISTHFQDRVEGFLTRYIFQATIYHV 818
Query: 491 WKWRCNMVMDTAPWT 505
W+ R D AP T
Sbjct: 819 WRERNGRRHDAAPNT 833
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 162 bits (410), Expect = 6e-40
Identities = 143/572 (25%), Positives = 229/572 (40%), Gaps = 57/572 (9%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HLLF DD L C+A+ + + + L + SG +N++KS V +
Sbjct: 626 PSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVKVDEDTKR 685
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I+ + I L GKYLG P + + F ++ E + ++ W L+ G+ L
Sbjct: 686 WIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQGGKEILL 745
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KS+ A+P Y M F LP+ + + M F W+ + + + KS GG
Sbjct: 746 KSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGGF 805
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G KD+ N ALL K W L +S + Q+ + +Y + LNA S W+ IL
Sbjct: 806 GFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSILY 865
Query: 292 ARDRLRGGFKFRLGTG-NSSIWYNDW--SGHGNLCEHL-PFVHITDTQLHLRDLVVNNAW 347
R+ L GG K +G G +++W + W GH +L ++I HL D + N W
Sbjct: 866 GRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTRN-W 924
Query: 348 DFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTWGESELGL----DLEAQSSRES----- 398
+ KL E+ Q + P + +S D + W + GL +SSRE+
Sbjct: 925 NLKKLTELFHEKDVQLIMHQRPLI--SSEDSYCWAGTNNGLYTVKSGYERSSRETFKNLF 982
Query: 399 -------------------------EFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYI 433
+ F+W L AL V + + ++ C C
Sbjct: 983 KEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFCKEE 1042
Query: 434 REDGIHSLRDCTHSRELW---------SRMGAGRWNNF-WTLNLSDWITLHARSDHAVKF 483
E H L C +R++W + G ++N + S + +
Sbjct: 1043 IETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTVSPW 1102
Query: 484 LAGLWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFWLSV-VWKP 542
L LW IWK R + T T+ +A +++ ++ Q S W P
Sbjct: 1103 L--LWEIWKNRNKTLFQ---GTGLTSSEIVAKAYEECNLWINAQEKSSGGVSPSEHKWNP 1157
Query: 543 PPNQCMKMNVDGSFRSDEGLMGTGGALRDSSG 574
PP +K N+ ++ + L G LRDS G
Sbjct: 1158 PPAGELKCNIGVAWSRQKQLAGVSWVLRDSMG 1189
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 161 bits (407), Expect = 1e-39
Identities = 158/670 (23%), Positives = 267/670 (39%), Gaps = 79/670 (11%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HLLFADD + F ++ +++ L + +SG +N KS S S++
Sbjct: 569 PRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKASGQSINFHKSSVTFSSKTPRSVKG 628
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I I GKYLG P GR R F +++ I +K +W + L+ AG+ +
Sbjct: 629 QVKRILKIRKEGGTGKYLGLPEHFGRRKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVML 688
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V+A+MP Y+M F LP ++ I + F W R + V WS + K+ GGL
Sbjct: 689 KAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGL 748
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRASSSAVWKGILR 291
G +D+ N +LL K W LL + L +++ KY + + + S W+ I+
Sbjct: 749 GFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIA 808
Query: 292 ARDRLRGGFKFRLGTGNS-SIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNN----- 345
R+ L+ G + + G SIW + W L P V I +DL V+
Sbjct: 809 GREILKEGLGWLITNGEKVSIWNDPW-----LSISKPLVPIGPALREHQDLRVSALINQN 863
Query: 346 --AWDFSKLFTSIPEEMKQWFLEVSPSVQNTSHDVWTW---------GESELGLDLEA-- 392
WD++K+ +P + ++ P+ + D W S G+ A
Sbjct: 864 TLQWDWNKIAVILPN--YENLIKQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVASI 921
Query: 393 ----------------QSSRESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIRED 436
Q+ + + +W +ALPV + H++ S AC RC E
Sbjct: 922 PIPQTQFNWQSNLWKLQTLPKIKHLMWKAAMEALPVGIQLVRRHISPSAACHRCG-APES 980
Query: 437 GIHSLRDCTHSRELWSRMGAGRWNNFWTLNLSDWITLHAR----------SDHAVKFLAG 486
H C + ++W ++ D ++L + S ++ G
Sbjct: 981 TTHLFFHCEFAAQVWELAPLQETTVPPGSSMLDALSLLKKAIILPPTGVTSAALFPWICG 1040
Query: 487 LWGIWKWRCNMVMDTAPWTIDTAWRKIAHDHDDFLKFMQPQLSHDDSFWLSVVWKPPPNQ 546
++G ++D W +A R + + Q + F
Sbjct: 1041 IYGKLGTMTRAILDALAW--QSAQRCLPKTRNVVHPISQLPVLRSGYFCF---------- 1088
Query: 547 CMKMNVDGSFRSDEGLMGTGGALRDSSGSWVTGFMAHYDNG-----NAFIAEMLALRDGL 601
VD ++ + L G+G + S + + A Y G +A AE A++ L
Sbjct: 1089 -----VDAAWIAQSSLAGSGWVFQ--SATALEKETATYSAGCRRLPSALSAEAWAIKSAL 1141
Query: 602 KIAWEQGCRRLICESDCLELVRNLASVDWVSLHSHGHILSEIRTMLRWSWRIDIAWIDRE 661
A + G L+ SD +V L S +S++ +L EIR + + +I R
Sbjct: 1142 LHALQLGRTDLMVLSDSKSVVDALTSN--ISINEIYGLLMEIRALRVSFHSLCFNFISRS 1199
Query: 662 GNRVADWLAK 671
N +AD AK
Sbjct: 1200 ANAIADATAK 1209
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 157 bits (396), Expect = 3e-38
Identities = 119/409 (29%), Positives = 183/409 (44%), Gaps = 64/409 (15%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P VSH+ FADD++LF +AS Q KV+++KSK S V +
Sbjct: 489 PKVSHVCFADDLILFAEASVAQ-----------------KVSLEKSKIFFSNNVSRDLEG 531
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
I I +LGKYLG P+ R+++ F +LE ++ +++ WK+ L+LAGR L
Sbjct: 532 LITAETGIGSTRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLT 591
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
K+V+ ++P +TM LP S++ +D+ R+F+W +R +L++W V R K+ GGL
Sbjct: 592 KAVLMSIPIHTMSSILLPASLLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGL 651
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKY-LRD-HTILNAPHRASSSAVWKGI 289
G++ D N ALL K W LL + LW +V++ KY + D H +A+ S+ W+ I
Sbjct: 652 GLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKVTDVHDSSWLVPKATWSSTWRSI 711
Query: 290 LRARDRLRGGFKFRLGTGNSSIWYNDWSGHGNLCEHLPFVHITDTQLHLR---DLVVNNA 346
G R G W H LC + ++ +L+ R
Sbjct: 712 ---------GVGLREGVAKG------WILHEPLCTRATCL-LSPEELNARVEEFWTEGVG 755
Query: 347 WDFSKLFTSIPEEMKQWF----------LEVSPSVQNTSHDVWTWGESELGLDLEAQSS- 395
WD KL +P + L S Q TS +T G + + L E +S
Sbjct: 756 WDMVKLGQCLPRSVTDRLHAVVIKGVLGLRDRISWQGTSDGDFTVGSAYVLLTQEEESKP 815
Query: 396 -RESEF--------------FVWLCLHDALPVNSKRFHCHLANSEACSR 429
ES F F+WL + N +R H+ + E C R
Sbjct: 816 CMESFFKRIWGVIAPERVRVFLWLVGQQVIMTNVERVRRHIGDIEVCQR 864
>At2g05980 putative non-LTR retroelement reverse transcriptase
Length = 1352
Score = 149 bits (375), Expect = 7e-36
Identities = 115/457 (25%), Positives = 195/457 (42%), Gaps = 46/457 (10%)
Query: 54 VSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRDDI 113
++HL FADD+++F ++ +Q F A S LK++++KS I G+ P+ + I
Sbjct: 845 LTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKS-TIFMAGISPNAKTSI 903
Query: 114 RGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLAKS 173
P L KYLG PL R+++ + L+E I ++ +W L+ AGR L KS
Sbjct: 904 LQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKS 963
Query: 174 VIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGLGM 233
V++++ + + VF LP++ + I++ +F+WS + WS V + K GGLG+
Sbjct: 964 VLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGL 1023
Query: 234 KDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILNAPHRAS-SSAVWKGILRA 292
K + + N L K +W +L + LWV+ + +R T + S +W+ IL+
Sbjct: 1024 KPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQ 1083
Query: 293 RDRLRGGFKFRLGTGN-SSIWYNDWSGHGNLCEHLPFVHITDTQLHLRDLVVNNAWDFSK 351
RD+ R + + +G +S W++ W G L +H+ D + NNA
Sbjct: 1084 RDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLG------IPNNATVAEV 1137
Query: 352 LFTSIPEEMKQWFL-------EVSPSVQNTSHDVWTWGESELGLDLEAQSSR-------- 396
+ T + + FL E++ ++T D W + E SS+
Sbjct: 1138 MNTHRRKRHRADFLNQIKSQIELARQDRSTDGDRSLWKQKEDTFKSSFSSSKTWQQIRSI 1197
Query: 397 -----------------ESEFFVWLCLHDALPVNSKRFHCHLANSEACSRCSYIREDGIH 439
+ F WL H+ L + K + C C E H
Sbjct: 1198 SLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDH 1257
Query: 440 SLRDCTHSRELWSRMGAGRWNNFWTLNLSDW--ITLH 474
C +S +W + G N N+ +W IT H
Sbjct: 1258 LFFSCPYSSHVWFSLTKGLLNG---RNILNWNLITPH 1291
>At4g04000 putative reverse transcriptase
Length = 1077
Score = 141 bits (355), Expect = 1e-33
Identities = 74/224 (33%), Positives = 115/224 (51%)
Query: 52 PPVSHLLFADDVLLFCQASTTQVQLVADTLRDFFASSGLKVNIDKSKAISSKGVHPSIRD 111
P V+HLLFADD + FC+ + L + +SG K+N K S P++R+
Sbjct: 609 PRVNHLLFADDTMFFCRVDPKSCLKLKSILHKYELASGQKINQAKYSITFSAKTPPAVRE 668
Query: 112 DIRGIAPIPLVNDLGKYLGFPLSGGRVSRGRFNFLLENINRKMAAWKTNLLNLAGRACLA 171
++ I I GKYLG P GR + F +++ I ++ +W + L+ AG+ +
Sbjct: 669 RVKQILLIQKEGGQGKYLGLPELFGRKKKDLFTAIVDRIKQRALSWSSRFLSSAGKLTML 728
Query: 172 KSVIAAMPTYTMQVFWLPRSIIHHIDRAMRSFIWSKGSGQRGWNLVNWSTVVRDKSHGGL 231
KSV++ MPTYTM F LP S+ I + F W QR + ++W + GGL
Sbjct: 729 KSVLSTMPTYTMSCFQLPLSLCKRIQSTLTRFWWDSKPDQRKMSWISWQKMTLSFKSGGL 788
Query: 232 GMKDMSDHNTALLGKAVWLLLKNSNKLWVQVMQHKYLRDHTILN 275
G +D+ N ALL K W LL+N + L +++ KY + T+L+
Sbjct: 789 GFRDVQTFNKALLAKLSWRLLQNPSCLLAKLLLGKYCKHSTLLD 832
Score = 30.0 bits (66), Expect = 4.7
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 575 SWVTGFMAHYDNGNAFIAEMLALRDGLKIAWEQGCRRLICESDCLELVRNLASVDWVSLH 634
S +G + D G+ IAE L +++A E + + SD +V+ L V
Sbjct: 974 SMESGNSSASDVGSPLIAETLVTLADVRVACESDIKAISFASDSQIIVKALNQKLQVK-E 1032
Query: 635 SHGHILSEIRTMLRWSWRIDIAWIDREGNRVADWLAKR 672
HG IL +I ++ +I+RE N AD LAKR
Sbjct: 1033 LHG-ILHDILSLSSSFDACTFTFINREFNHQADALAKR 1069
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.137 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,562,489
Number of Sequences: 26719
Number of extensions: 772240
Number of successful extensions: 2286
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1982
Number of HSP's gapped (non-prelim): 181
length of query: 709
length of database: 11,318,596
effective HSP length: 106
effective length of query: 603
effective length of database: 8,486,382
effective search space: 5117288346
effective search space used: 5117288346
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0108.16